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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                             <------
                                                                     <-------TEIL <---------ALFIN1
                                                                    <-----------GT1      <---------TOE2(3)
 --------->GLK1(1)                                               --------->ANAC58 ------->GAMYB  <--
 <---------GLK1(1)        ----------->GT1                        --------->ANAC58 ----------->RAV1(1)
------WOX13(1)           ----------->GT1                         ----------->GT1 --------->MYB46(3)
--->ATHB12       <----------DOF2  <----------ID1     <------ZmHOX2a(1)          -------->P<---------REM1(1)
 
ttggaaatcgaacaccaagtctttagaaacgataaaaaaaacaaacaaaaaaaacaggaaatgaaaacaagttacattttagcaaccacattgatgtaac  20151300
                                                 --------->ARR14(2)
                                             <-----------GT1
                                           <----------DOF2        <---------ANAC46
                                          <---------ANAC58        <---------ANAC58
                                          <---------ANAC58        <---------ANAC58
  ----------->HVH21                  --------->CCA1(2)            --------------------->WRI1
<---------ANAC46   <---------ANAC58 --------->ARR14(2)          ------>NtERF2                 <-----
<---------ANAC55(2)<---------ANAC58 --------->ARR11(3)     --------->ZAT18          --------->At4g35610
-----GT1  <---------WRKY38(1)       <---------ARR14(2)     <---------ZAT14          <---------At4g35610
-------MYB52(1)  <---------YAB1   ----------->ARR10  ------>ZmHOX2a(1)    <---------GLK1(2)   ------
 
gttatgtgaagggtcgactcatgcttgatgttatagtcagatatggctttactatcctcgagtaccctgccttgaaagattagcctctgctgttctactg  20151400
                                                                     <---------MYB46(3)
                                                                     <------MYB83
                                                                     <------MYB46(1)
                                                                    <---------AtMYB61
                                                                   <--------P
                                                                 --------->ALFIN1
                  <---------ANAC58                             <------MYB83
                  <---------ANAC58                             <------MYB46(1)--------->ANAC46
                 --------->ATHB12                             <---------TOE2(2)                    -
      <----------DOF2                                      --------->TOE2(1) --------->LBD16 -------
----HSFB2a(2)   <---------YAB1            <-----------HVH21--------->TOE1(1) <---------LBD16 -------
--->HSFB2a(2)------>ZmHOX2a(1)           <---------bZIP60(1)  <---------TOE1(2)--------->LBD16     <
 
gaatgccttctttctcctcatgcttggccttgagttctctaatggtgtcagaccccttaacctcgtaggtgttggttctccccgtaagagtcttaataaa  20151500
                                                                     --------->ARR11(3)
                                                                     <---------ARR11(3)
                                                                     --------->ARR14(2)
                                                                     <---------ARR14(2)
                 <---------ARR11(1)                                  <---------AGP1
                 --------->ARR14(2)                         --------->GLK1(1)
                 <---------ARR14(2)                --------->ANAC55(2)
                 ------->TEIL                     <---------LBD16    ------->TEIL
     <---------ICU4                       --------->ANAC58<---------At4g35610
    --------->ICU4                        --------->ANAC58<------NtERF2
    <---------YAB1 <---------LBD16      --------->MYB46(3)--------->At4g35610
  --------->YAB1 --------->GLK1(2)  <------ZmHOX2a(2)    <---------DEAR3(2)
  <---------ICU4<---------ARR14(1)  --------->CCA1(2)   <---------DEAR3(1)
 --------->ICU4 <XXXXXXXXXXXXXXXXXXXXMIR826--------->MYB46(3)       <---------CCA1(2)
 <---------YAB1 <---------CCA1(2)  <---------ARR14(2)  --------->RAP2.6(3)
-------->YAB1  --------->LBD16     --------->ARR14(2) --------->ARR14(2)             --------->ALFIN1
-->AHL20(2)   --------->ANAC55(2)  --------->ARR11(3) <-----------HVH21------>ZmHOX2a(2)    --------
-->YAB1 ------>ZmHOX2a(2)          --------->AGP1<-----------GT1<---------AtLEC2     <-----------RAV1(1)
---------ICU4 --------->ANAC46    --------->At4g35610 <---------ARR14(2)   <---------AtMYB61<-------
 
aatcatcatgatcgcacccgtatctggagttggactcagatccacaaccaattcacgggtcggctctccatggatcttgaggtcgatggtgttggagcta  20151600
                    <----------DOF2
                  ------>ZmHOX2a(1)                                 <-----------GT1
->At4g35610<---------DAG2                                          <---------CCA1(2)            <---
--At4g35610<----------DOF2              --------->YAB1          <----------DOF2         ------>ZmHOX2a(1)
 
tcttcaacctctagctttatcctctttccctccaacgtcttaatcgaaatatgcatagcaaactcaacttttatctctctctctctctctcctctctgtc  20151700
                                                             ---------->ID1
                                                     <---------ANAC55(2)
                                                     --------->ANAC55(2)
                                                    <---------ICU4
                                                 <--------ATHB1                         ------->MYC3
                            <---------AHL20(2)   --------->YAB1                         <-------MYC3
        --------->ANAC46   --------->AHL20(2)   <---------ATHB12           <<<<<<<<<<GT-3b
    <-----------GT1---------->DOF2              <---------ATHB51    <-----------GT1    <---------O2
-------DOF2   <----------DOF2               ------------>CBF <---------MYB52(1)<----------DOF2<-----
 
tttttttatacataccactttgcaaagagatttatttgtcttacagttccaataatacttattcgttgttttgactatttttctttggaaacgtggtctt  20151800
                      --------->ZAT14
             <---------WOX13(1)
            <------------CBF
           <---------AHL20(2)
           --------->ATHB12       <-----------RAV1(1)        <----------DOF2
          <---------AHL20(2)    ------>MYB83              <-----------GT1         <---------DAG2
  ---------->DOF2     <---------ZAT14 ------>NtERF2      <-----------GT1     <-----------GT1    <---
-----DOF2 --------->AHL20(2)    ------>MYB46(1)     <----------DOF2  <-----------GT1          ------
 
tgattaaaagctattaattgatcagtgaagaaaccaaatgctgccccttcgatttcttttttatcttttttttttcaaattttcaatttttgtgttcctc  20151900
                               <---------bZIP60(1)
                               --------->bZIP60(1)           <-----------GT1
                          <---------ICU4                 ------>MYB83                           <---
                          --------->YAB1--------->YAB1 <---------MYB59             <----------DOF2--
------WRKY18(1)          <---------ATHB12     --------->AHL20(2)                   <---------------AGL15
>ZmHOX2a(1)         <---------ARR11(3)<---------ARR11(3) ------>MYB46(1)           --------------->AGL15
 
gaccgaatgtagaaggtttacaagttctatcatgacttcataatcttcataaattcgaccaaattttcaatttgaccacaagttttctttatttagtcga  20152000
                                                                                                 ---
                                                                                                <---
                                                                                              ------
                                                                                              <-----
                                                                                              <-----
                                                                                              <-----
                                                                                              ------
                                                                                              ------
                                                                                              ------
                                                                                             <------
                                                                                             -------
                                                                                             <------
         ------->PIF5                                                                      <--------
         <-------PIF5            ---------->DOF2                                           ---------
     --------->ZAT14       --------->ANAC58                          --------->At5g28300  --------->AHL20(2)
     <---------ZAT14       --------->ANAC58                         ----------->GT1     --------->TOE2(3)
   --------->ANAC46      --------->MYB52(1)                        --------->ZAT6       --------->YAB1
---------CBF            <---------SPL7   --------->YAB1           <---------At5g28300 *TSS<---------AHL20(2)
--------->HVH21     ----------->HVH21   <-------TEIL--------->AHL20(2)             ------------>CBF
 
attgacacagcacttgctattccatgacgaacgaaacaaagcattcatatacaaataaaacagagcatttacagtaaaaccaagaacacaatattaatta  20152100
------>AHL20(2)
------YAB1
--->ATHB51
----ICU4
----AHL20(2)
---HAHB4                                               <---------ARR14(2)
-->HAHB4                                               ------>MYB46(1)
--->YAB1                                               ------>MYB83               <---------ANAC46
-->ATHB1                                               --------->ARR14(2)      --------->GLK1(2)
---ATHB51                                             --------->WOX13(1)      <---------ARR14(2) <--
-->ICU4                                              --------->AtMYB61        --------->ARR14(2)<---
---YAB1                                          ------->GAMYB     <---------ANAC58           <-----
-ICU4                                           --------->MYB46(3) <---------ANAC58          <------
>YAB1                                  --------->GLK1(2)     <----------DOF2  <---------GLK1(2)-----
 
ttaaacatggaagacaacaacaacaacaacaacaacaacaacaatctggtaacagaccaatccgctttgttcgtgtttggagattctgtgtttgatggcg  20152200
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AGI:  At1g53950.1   
Description:  ubiquitin family protein. similar to UBQ3 (POLYUBIQUITIN 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G03240.3); similar to UBQ3 (POLYUBIQUITIN 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G03240.2); similar to UBQ4 (ubiquitin 4), protein binding [Arabidopsis thaliana] (TAIR:AT5G20620.1); similar to ubiquitin [Mytilus edulis] (GB:CAJ32650.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626)
Range:  from: 20150116    to: 20151656    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At1g53970.1   
Description:  unknown protein
Range:  from: 20152087    to: 20152566    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.