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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
YAB1
--------->
YAB1
------->
TEIL
--------->
ATHB12
<---------
ATHB12
<---------
ATHB12
--------->
AHL20(2)
<---------
ICU4
--------->
ARR14(2)
--------->
ANAC58
<<<<<<<<<
MYB98
-------->
ICU4
<---------
ARR14(2)
--------->
ANAC46
<---------
MYB52(1)
---------
YAB1
--------->
ANAC58
--------->
ANAC58
--------->
GLK1(2)
<----
------>
YAB1
--------->
ANAC58
<---------
AHL20(2)
--------->
ARR14(2)
<----
>
RAV1(1)
----------->
GT1
--------->
ANAC46
--------->
AHL20(2)
<---------
ARR14(2)
-----------
ggatgattacagagagaaataagcaaatacacaatcaaggtcgaattaaacgcaatgaatctccaaaattgagcatccgttactgaaaaaaatggaaact
20059800
--------->
At4g35610
--------->
ATERF1(1)
------>
ZmHOX2a(2)
--------->
ARR11(3)
<-----------
ARR10
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ARR11(3)
<------
ZmHOX2a(1)
------>
NtERF2
--------->
LBD16
------>
NtERF2
-----
DAG2
<---------
DAG2
--------->
HSFB2a(1)
<-----------
HVH21
------
DOF2
<---------
ARR11(3)
--------->
DAG2
<---------
ANAC46
--------->
DEAR3(1)
>
GT1
--------->
ARR11(3)
---------->
DOF2
<---------
LBD16
<---------
ATERF1(1)
ttttggagagagagac
cttatggtgaggccaagaacaagtgaagagagaaggaacccagaaggcgaacatttctccgtagaggatcgtcgcagcccaaat
20059900
---
---
<---
--------->
At4g35610
<---------
CCA1(2)
<---------
At4g35610
<---------
ANAC55(2)
<---------
MYB52(1)
--------->
ANAC55(2)
<------
NtERF2
<---------
ARR14(2)
------>
NtERF2
--------->
ARR14(2)
--------->
ARR11(3)
<---------
ALFIN1
------->
TEIL
<---------
ARR11(3)
--------->
DEAR3(1)
<---------
GLK1(2)
--------->
ARR14(2)
<-----------
TGA1
--------->
At4g35610
----------->
ARR10
--------->
ANAC58
--------->
GLK1(2)
------>
NtERF2
<---
--------->
ANAC46
<---------
ARR14(2)
<---------
ANAC58
----
--------->
ANAC58
<---------
AtMYB61
--------->
ARR14(2)
<---------
ANAC58
------->
TEIL
---------->
DOF2
<---------
AtMYB61
<-----------
GT1
<----------
DOF2
--------->
CCA1(2)
--------->
MYB52(1)
<-----------
RAV1(1)
--------->
LBD16
------>
ZmHOX2a(1)
--------->
DEAR3(1)
<
gagacataacgccaccgtgagcttatggtggtgtttcat
tttttccgagtatctgaatctcctcccttctcggctttgcttcgccgagatatgtatctaa
20060000
--------->
WRKY38(1)
--------->
WRKY12
--------->
WRKY45
--------->
ZAT14
--------->
DOF5.7(2)
<---------
ARR14(2)
<-------
GAMYB
--------->
At4g35610
<---------
ANAC46
--------->
ZAT2
<---------
MYB46(3)
<-----------
HVH21
<---------
ZAT14
<-------
GAMYB
----------->
RAV1(1)
<---------
ANAC46
<---------
MYB46(3)
--------->
ANAC58
<---------
ANAC58
------>
ZmHOX2a(2)
<---------
WRKY38(1)
<---------
ZAT2
----->
HAHB4
--------->
WRKY18(1)
<---------
At4g35610
------>
YAB1
<--------
ZAP1
<----------
CDC5
--------->
ARR14(2)
------
YAB1
<-----------
HVH21
--------->
At4g35610
*
TSS
<---------
ZAT18
------
ATHB12
---------->
DOF2
----------->
HVH21
<---------
ANAC58
<----------
ID1
--------->
ZAT18
----->
ICU4
<---------
WRKY18(1)
--------->
ANAC58
<---------
ANAC46
---------->
DOF2
------->
TEIL
---------
YAB1
---------->
DOF2
--------->
ANAC46
<-------
TEIL
----------->
GT1
--------->
TOE1(2)
tgatcgttgtcgttgaccaaaagagcggtcaagacgcgacagacgctgagctgcgtttgagtat
accgaaaaacgccgaaacttgggaatgaatgcgcta
20060100
--
-----
-----
----------->
GT1
<---------
YAB1
<------------
CBF
--------->
ZAT14
--------->
YAB1
--------->
ATHB12
<---------
ZAT14
<---------
ICU4
<---------
YAB1
--------->
YAB1
--------->
ICU4
<------------
CBF
---------->
ID1
<---------
YAB1
<---------
ATHB51
<------
NtERF2
<----------
DOF2
<---------
YAB1
---------->
DOF2
-----
ttccaaaactactgggccgagtttatattgggcctatacttttgttgttattgggcctatgcttattagaacagtgacgaacaaagaaataatgaaaaac
20060200
--------->
LBD16
<---------
LBD16
<-----------
RAV1(2)
--------->
ATERF1(1)
<---------
ATERF1(1)
------>
NtERF2
--------->
ANAC58
<---------
ATERF1(1)
--------->
ANAC58
--------->
LBD16
*
TSS
---------->
DOF2
<---------
DEAR3(1)
------->
MYB52(1)
<---------
LBD16
<---------
ALFIN1
---->
ANAC46
<---------
GLK1(2)
<------
ZmHOX2a(1)
<
---->
ANAC58
<---------
ZAT14
------>
NtERF2
------->
TEIL
<-----
---->
ANAC58
--------->
ZAT14
--------->
DEAR3(1)
<----------
DOF2
<-----
gaaacggaaaactcaaagccgagacagtactctagcttctccggcgactccaggagcgcctctttgcacctctcttcttctctcgctctctgtttctgag
20060300
<-----------
GT1
<---------
AHL20(2)
<----------
DOF2
<---------
ARR11(1)
--------->
ARR14(2)
<---------
SPL7
------->
TEIL
<---------
TOE2(3)
<---------
ARR14(2)
>>>>>>>>>
WRKY18
------->
TEIL
<---------
ARR14(1)
<---------
WOX13(1)
--------->
ANAC46
---------
MYB46(3)
<---------
CCA1(2)
--------->
ATHB12
--------->
ANAC58
----
TOE2(3)
=========================
HOX2a_HOX2a
--------->
ANAC58
<--------
----
TOE1(3)
------>
ZmHOX2a(2)
------>
ZmHOX2a(1)
--------->
ARR11(3)
<---------
MYB46(3)
gtttgttcgtatttctcatcgatcgtatctttttattttcctctattcattgacgatgtacgaagacattgctcacgaatcgcgattgttgattctttgt
20060400
--------->
ATHB12
<--------
HAHB4
<---------
ICU4
<---------
YAB1
--------->
ICU4
--------->
YAB1
<---------
ICU4
--------->
ICU4
<---------
ATHB12
--------->
ANAC55(2)
<------
ZmHOX2a(1)
--------->
MYB59
<---------
ANAC55(2)
<---------
GLK1(1)
<---------
TOE2(3)
<---------
YAB1
<---------
TOE1(3)
---------
<---------
TOE2(2)
<---------
At4g35610
--------->
ICU4
--------->
GLK1(1)
--
DOF2
<---------
TOE1(3)
<---------
At4g35610
----------->
GT1
<---------
TOE2(3)
---------->
DOF2
gcataggtttaggtatttttgttcgtcttgatgtttagatgagtaagatgatagcgattaagtaaaaatttgctaaggaaatcatcattagggaaagtat
20060500
<---------
WOX13(1)
--------->
ATHB12
<---------
WOX13(1)
--------->
ATHB12
<---------
AHL20(2)
<---------
WOX13(1)
--------->
ATHB12
<----------
DOF2
--------->
AHL20(2)
<---------
RVE1(1)
<---------
AHL20(2)
<---------
CCA1(1)
<-
<---------
WOX13(1)
--------->
ARR11(3)
--------->
ZAT14
-->
GT1
<---------
YAB1
--------->
ATHB12
<---------
ARR11(3)
<---------
WOX13(1)
--
ttaggggttttgatttagtagtgagtgagtgattaattgattgattgtttgtttgagagatatttagggcttctttcatgttgaatgactctgttctcta
20060600
--------->
HSFB2a(2)
--------->
ARR14(2)
---
<----------
DOF2
----------->
GT1
<-----
<---------
WOX13(1)
<---------
HSFB2a(2)
<-----
--------
ARR11(3)
--------->
ICU4
--------->
ATHB12
<---------
ARR14(2)
<---------
YAB1
------->
ARR11(3)
---------->
DOF2
<---------
YAB1
<---------
TOE2(3)
<-----------
HVH21
<-----
atatctgttcttagttattgtttataaagatgaatactcactctgattgattttctttag
gttctgcaagaagtaaaac
atgtcagttcttattgtgacg
20060700
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AGI:
At1g53710.1
Description:
protein serine/threonine phosphatase. similar to unnamed protein product [Vitis vinifera] (GB:CAO68485.1); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843)
Range:
from: 20056829
to: 20060064
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At1g53720.1
Description:
ATCYP59/CYP59 (CYCLOPHILIN 59); RNA binding / nucleic acid binding / peptidyl-prolyl cis-trans isomerase. similar to peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative [Arabidopsis thaliana] (TAIR:AT2G36130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47936.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Cyclophilin-like (InterPro:IPR015891); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Peptidyl
Range:
from: 20060201
to: 20063306
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.