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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ARR11(3)
--------->
ARR11(3)
<---------
CCA1(2)
----------->
GT1
--------->
DAG2
--------->
TOE1(3)
<---------
MYB52(1)
---------->
DOF2
<---------
ANAC58
--------->
DAG2
--------->
YAB1
<---------
ANAC58
---------->
DOF2
--------->
MYB52(1)
<---------
TOE1(2)
--------->
YAB1
<----------
DOF2
<---------
MYB52(2)
------>
ZmHOX2a(1)
------>
ZmHOX2a(2)
--------->
TOE2(3)
-------->
TOE2(3)
--------->
AHL20(2)
--------->
TOE2(3)
<---------------------
WRI1
aatctcaaaactaacataaagtttaaatcttcctgcgtttcaaaaccctaactaatctaatccatgatcgaatcaaaaaaagttgaaacctttagtcaat
19891500
====================
------>
ZmHOX2a(2)
====================
=====================
=====================
<------
ZmHOX2a(2)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
AGP1
----------->
GT1
<---------
ARR14(3)
<----------
ID1
<-----------
ARR10
--------->
DAG2
--------->
ARR14(3)
------>
ZmHOX2a(2)
--------->
GLK1(1)
<------
ZmHOX2a(2)
<---------
GLK1(1)
<---------
ARR11(3)
--------->
LBD16
---
<---------
ARR14(2)
--------->
ANAC46
===
--------->
ARR14(2)
<---------
LBD16
<---
<---------
ARR14(3)
<-------
TEIL
----------->
ARR10
-------
--------->
ARR11(3)
<---------------
AtSPL3
<------
--------->
ARR14(3)
--------------->
AtSPL3
<-------
<------
ZmHOX2a(1)
<-----------
HVH21
<---------------
AtSPL8
<---------
At5g28300
<---------
LBD16
---------->
DOF2
----------->
GT1
<-----------
HVH21
--------->
AtLEC2
actcaaaacagagcatgtagtttcaggatcttatagcaaaagggtcaaatccaaaatggagaaaacgtac
agtttcacggagatcttcaccgtgcaaatc
19891600
<---------
HSFB2a(2)
--------->
HSFB2a(2)
--------->
GLK1(1)
<---------
GLK1(1)
--------->
ARR11(3)
--------->
ARR14(2)
<---------
ARR11(3)
<---------
ARR14(2)
---------->
DOF2
<------
ZmHOX2a(1)
--------->
ANAC58
=======================
HOX2a_HOX2a
====
HOX2a_HOX2a
--------->
ANAC58
=========
HOX2a_HOX2a
<---------
HSFB2a(2)
====
HOX2a_HOX2a
--------->
HSFB2a(2)
=========
HOX2a_HOX2a
<---------
HSFC1(1)
----------->
HVH21
--->
ZmHOX2a(1)
<------
ZmHOX2a(2)
<---------
ANAC58
--------->
At4g35610
=========================
HOX2a_HOX2a
<---------
ANAC58
<---------
ARR14(2)
------
LBD16
--------->
AGP1
--------->
ANAC58
--------->
ARR14(2)
-->
ARR14(2)
--------->
ARR14(2)
--------->
ANAC46
<---------
LBD16
-----
---
ARR14(2)
<---------
ARR14(2)
--------->
ANAC58
<---------
ZAT14
<------
ZmHOX2a(1)
-------
--
GLK1(1)
<---------
ARR14(2)
--------->
YAB1
---------->
ID1
<----------
DOF2
--------->
WRKY12
--
ctggaggatatcgagaaaccgatctagaagcaaagcatcatactcaacaagcttgtcgtcttcactaactttgccaggaaccagttgacgaagatgaaca
19891700
--------->
AHL20(2)
<---------
AHL20(2)
<---------
YAB1
<---------
ICU4
<---------
ATHB51
<
--------->
AHL20(2)
-
<---------
AHL20(2)
-
----------->
RAV1(2)
--------->
ICU4
<
<---------
At4g35610
--------->
AHL20(2)
-----
--------->
ANAC58
--------->
YAB1
------>
ZmHOX2a(2)
--------->
ANAC58
------>
MYB83
---------->
DOF2
<-----
<---------
ATHB12
--------->
ARR14(2)
------>
MYB46(1)
<------
ZmHOX2a(2)
---->
TOE2(3)
--------->
HSFB2a(2)
<-----------
GT1
<---------
MYB59
<---------
ARR14(2)
>
TEIL
------>
NtERF2
<---------
GLK1(2)
--------->
AtMYB61
--------->
ARR14(2)
------->
WOX13(1)
<---------
ARR14(2)
--------->
ZAT14
<---------
AHL20(1)
------
tcaatcgatgccatcttctctaacttccgattcgccat
tttttcacctgcttcgct
ctgaagtaagaccaaacaaaataattaaagggatccaaaaatta
19891800
---------->
DOF2
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
CCA1(2)
--------->
MYB52(1)
---------
ARR11(3)
------->
GAMYB
-------->
ARR11(3)
--------->
At4g35610
-
-------->
AGP1
=========================
---------
AGP1
<---------
DEAR3(1)
----------->
RAV1(1)
<----
----->
DOF2
<---------------------
WRI1
<---------
WRKY12
-----
----
AHL20(2)
<---------
GLK1(1)
---------->
DOF2
<---------
WRKY38(1)
<------
--->
AHL20(2)
--------->
ARR11(3)
----------->
GT1
<----------
DOF2
<---------
MYB52(2)
aagatctaaagacaaaattgactgagatttcggcgatgaaatcggagacagaaaataagaaagtcggaaactttgagtcaacagaaacaaacagac
ccag
19891900
--------->
LBD16
<---------------
AGL15
<---------
YAB1
--------------->
AGL15
--------->
At4g35610
<-----------------
AGL2
--------->
ARR11(3)
----------------->
AGL2
<---------
ARR11(3)
----------------->
AGL3
<---------
ARR14(2)
--------->
DAG2
=================================
--------->
ARR14(2)
---------->
DOF2
-------->
P
--------->
GLK1(2)
<------
ZmHOX2a(1)
--------->
ALFIN1
<---------
HSFB2a(2)
---------->
GT1
--------->
ZAT18
--------->
ALFIN1
<---------
MYB52(2)
=====
RAV
<---------
At4g35610
----------->
GT1
<---------
ANAC58
--------->
At4g35610
-----
At4g35610
<---------
ZAT14
<---------
ANAC58
--------->
GLK1(2)
<-----
---->
At4g35610
--------->
ZAT14
*
TSS
--------->
ALFIN1
--------->
HSFB2a(2)
------
-----
RAV1(2)
<---------
LBD16
--------->
ALFIN1
<-----------
ARR10
---------->
DOF2
atgagaaaaatctgctgatagtgcggaggaaaagtaaatctaac
aagtgtgtgtgtgtgtggagaagctaaccagttatagaagtaaaagctgtgtcctt
19892000
<---------------
AGL15
--------------->
AGL15
<-----------------
AGL3
<---------
WOX13(1)
--------->
GLK1(1)
----------------->
AGL3
--------->
ATHB12
<---------
GLK1(1)
<---------
ANAC58
<---------
YAB1
<---------
GLK1(2)
--------->
ARR11(3)
--------->
ICU4
--------->
ARR14(2)
--------->
YAB1
<---------
ANAC58
--------->
YAB1
--------->
At4g35610
<---------
ANAC55(2)
<---------
ANAC58
<------
ZmHOX2a(2)
--------->
WOX13(1)
<-------
TEIL
----------->
ARR10
=====================
HOX2a_HOX2a
=========================================================================
MADS_MADS
------>
ZmHOX2a(1)
-----
DOF2
<---------
ARR14(2)
--------->
ANAC55(2)
<---------
ANAC58
--------->
ARR11(3)
>
ZmHOX2a(1)
<-------
TEIL
--------->
CCA1(2)
<---------
ARR11(3)
<---------
ARR11(3)
tgaagtcagtcagattcagatttcagagatacataaccaaaaataagatacttggcttacctatatatagagagtgagatcatgatggattcctatacat
19892100
---------
---------
<---------
AHL20(2)
--------->
AHL20(1)
<----------
DOF2
<---------
AHL20(2)
<---------
DAG2
<---------
AHL20(2)
--------->
TOE2(3)
------>
ZmHOX2a(1)
<-----
--------->
ICU4
<-----------
GT1
<----------
DOF2
--------->
AHL20(2)
<---------
YAB1
<-----------
GT1
--------->
ATHB12
--------->
TOE2(3)
<-------
<----------
DOF2
<-----------
GT1
<---------
ICU4
<-----------
GT1
<---------
AHL20(1)
tattctatttctatatgtgatgctcgcttatagttggaatttttaacctttttttccatgatttctatctctttttttcctcaatttatatatatttatt
19892200
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(1)
--------->
ATHB12
<---------
YAB1
<---------
AHL20(2)
--------->
ATHB12
--------->
ICU4
<---------
YAB1
<---------
YAB1
--------->
YAB1
<---------
RVE1(1)
<---------
GLK1(2)
<---------
YAB1
--------
>
ICU4
<---------
GLK1(2)
--------->
ARR11(3)
---------->
DOF2
--------->
AHL20(2)
>
AHL20(2)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
ANAC58
<---------
AHL20(2)
----
YAB1
----------->
ARR10
---------->
DOF2
------->
TEIL
--------->
ANAC58
<---------
WOX13(1)
--
AHL20(2)
<---------
ARR11(3)
<---------
RVE1(1)
<---------
ZAT6
--------->
AHL20(1)
<--------
aatgcattgagaagatttttatttatgtataaaagagagattttcattgaatctagtgatagtcaagaaagaaatattatgattaattaatttttgtgga
19892300
<---------
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
<---------
YAB1
<---
<---------
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
ARR11(3)
--------->
YAB1
-----
<---------
ARR11(3)
--------->
AHL20(1)
------
<---------
AHL20(1)
--------->
AHL20(2)
<-----
--------->
AHL20(1)
<---------
AHL20(2)
<-----
<---------
AHL20(2)
--------->
AHL20(2)
<-----
--------->
AHL20(1)
<---------
AHL20(2)
<-----
<---------
AHL20(1)
----------->
GT1
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(2)
<-------
TEIL
-
->
HSFB2a(2)
--------->
TOE2(3)
--------->
AHL20(1)
<---------
AHL20(2)
--------->
AtLEC2
-
LBD16
--------->
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
acaaaaaaataaccaaaacaataacataaaatatttttatttttaatatatcagtaaaaaattaattatatcacttatgtaaacaacatgcattcttccg
19892400
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AGI:
At1g53310.1
Description:
ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1); phosphoenolpyruvate carboxylase. Identical to Phosphoenolpyruvate carboxylase 1 (PPC1) [Arabidopsis Thaliana] (GB:Q9MAH0;GB:Q546E4); similar to ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2), phosphoenolpyruvate carboxylase [Arabidopsis thaliana] (TAIR:AT2G42600.1); similar to ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3), phosphoenolpyruvate carboxylase [Arabidopsis thaliana] (TAIR:AT3G14940.1); similar to ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2), phosphoenolpyruvate carboxylase [Arabidopsis thaliana] (TAIR:AT2G42600.2); similar to phosphoenolpyruvate carboxylase [Brassica juncea] (GB:CAA11415.1); simi
Range:
from: 19887695
to: 19891944
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.