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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------>
ZmHOX2a(2)
--------->
CCA1(2)
<------
ZmHOX2a(2)
<---------
ARR11(3)
--------->
ARR11(3)
xx
--------->
ARR14(2)
<-----
<---------
AGP1
xxxxxxxx
--------->
AGP1
<---------
MYB52(1)
xxxxxxxx
<---------
ARR14(2)
<---------
ANAC58
---------
<-----------
ARR10
<---------
ANAC58
<xxxxxxxxx
<---------
ARR14(3)
--------->
LBD16
<---------
At4g35610
--------->
ARR14(3)
--------->
GLK1(2)
--------->
ANAC46
<xxxxxxxxxxxxxx
--------->
HSFB2a(2)
<-------
GAMYB
<---------
LBD16
<xxxxxxxxxxxxxxxx
<-----------
GT1
<---------
RAP2.6(3)
------->
TEIL
<----------
DOF2
xxxxxxx
----
GT1
<---------
HSFB2a(2)
---------->
ID1
--------->
ICU4
--------->
LBD16
---------->
ID1
----------->
GT1
attctttttactggaacaagatctgaacttgccgttatactgcaattctgaattgaaaaccccgatgtacccggcttgtcactttgttgagcagttataa
18648400
------>
NtERF2
--------->
HSFB2a(2)
<---------
ANAC58
<---------
HSFB2a(2)
<---------
ANAC58
<---------
SPL7
<---------
ANAC58
xxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
------
GT1
<---------
ANAC58
xxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxx>
smallRNA(i2)
<-------
>
YAB1
------>
ZmHOX2a(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
-----------
xxxxxxxxxxxxxx
smallRNA(fl3)
<------
NtERF2
------>
NtERF2
xxxxxxxxxx
smallRNA(fl3)
--------->
LBD16
--------->
ANAC46
<
x
smallRNA(si3)
<---------
MYB52(1)
<---------
WRKY18(1)
--------->
ABI4(2)
xxxxxxxxx>
smallRNA(i)
<---------
LBD16
----------->
GT1
----------->
HVH21
xxxxxxxxxxxxxxxxxxxxxx
cattgctctgtccttccattggcttccgggcctcaattcgacagttttgaaaaattgctgaggcatgaccgaaaatgaagtctacggtgcccgtgatgaa
18648500
--------->
At5g28300
--------->
ANAC58
----------->
GT1
--------->
ANAC58
--------->
At4g35610
--------->
ANAC58
<---------
YAB1
<---------
At4g35610
--------->
ANAC58
--------->
LBD16
--------->
At4g35610
----------->
HVH21
------>
ZmHOX2a(1)
<---------
MYB52(1)
<---------
At4g35610
--
REM1(1)
--------->
ARR14(2)
------>
NtERF2
--------->
DEAR3(1)
>
HVH21
<---------
ARR14(2)
<---------
ALFIN1
<---------
ALFIN1
-----------
HVH21
<---------
GLK1(1)
--------->
ANAC46
<-----------
HVH21
x>
smallRNA(l2)
<---------
YAB1
--------->
GLK1(1)
----------->
HVH21
<---------
ZAT14
gcagtcacggtaaaattgtctgtatgaatgggcatagagggtatcctgataagcatcaatgcgacaccgatagatgactacagcatcaccgctcactcga
18648600
------>
ZmHOX2a(1)
--------->
TOE1(2)
----------->
RAV1(2)
------>
ZmHOX2a(2)
--------->
GLK1(2)
<------
ZmHOX2a(2)
--------->
ARR14(2)
<---------
ARR14(2)
---------->
DOF2
<---------
ANAC58
------->
TEIL
--------->
LBD16
<---------
MYB52(1)
--------->
ARR14(2)
<----------
DOF2
--------->
ZAT14
<---------
ARR11(3)
---------->
ID1
<---------
ZAT14
<---------
ARR14(3)
----------->
RAV1(2)
<---------
ANAC58
--------->
ARR14(3)
------->
GAMYB
<---------
ANAC58
<---------
CCA1(2)
------->
TEIL
--------->
MYB46(3)
<---------
ANAC46
<---------
GLK1(2)
=================
RAV
<---------
ANAC58
--------->
ARR11(3)
<------
NtERF2
----------->
RAV1(1)
<-----------
RAV1(2)
----------->
ARR10
<---------
MYB46(3)
agagcaacagcctgtccctttgctggtccagccgtgttctgtatccaaagatcctgggccatgaaccaatttccatcgatggctgcaagtttataaaaca
18648700
>>>>>>>>>>
AtTINY2
<---------
ETT(1)
------>
MYB83
<---------
ANAC58
<----------
DOF2
<-----------
GT1
<---------
AHL20(2)
<---------
DAG2
--------->
YAB1
--------->
AHL20(2)
--------->
LBD16
<---------
YAB1
<---------
ANAC46
--------->
YAB1
----------->
RAV1(1)
--------->
AHL20(2)
<---------
YAB1
<--
<---------
ATHB51
<---------
LBD16
<---------
WOX13(1)
--------->
YAB1
----
<---------
TOE2(3)
<---------
ANAC58
<---------
LBD16
--------->
YAB1
------>
MYB46(1)
--------->
TOE2(3)
tatgtgagtttaagaaatacaataataaatagcttccgacatataatccgggctttatgtgaatgatataataaaccaaatcgtgatcaatgccttagat
18648800
---------->
DOF2
<-----------------------
TaNAC69(2)
<---------
AHL20(2)
----------->
GT1
--------->
AHL20(1)
<----------
DOF2
<------------
CBF
<---------
AHL20(1)
<------
MYB46(1)
<---------
ARR11(3)
<---------
AHL20(2)
<------
MYB83
<---------
TOE2(3)
<---------
ICU4
--------->
AHL20(2)
-------
AHL20(2)
<---------
YAB1
--------->
ICU4
--------->
YAB1
--------->
MYB52(1)
----->
AHL20(2)
*
TSS
--------->
ARR11(3)
<-----------
GT1
--------->
YAB1
--------->
TOE1(3)
<-
ttatttggtttcttttcaattc
acttaagatagtccatattgtaatttttacagaaacaaatataatgacattaaaagcttaactatcgaagagcattta
18648900
<---------
YAB1
--------->
YAB1
<---------
ICU4
--------->
ICU4
--------->
YAB1
<------
MYB83
--------->
ATHB51
<---------
YAB1
<------
MYB46(1)
<--------
HAHB4
<---------
AHL20(2)
<---------
ARR14(2)
<--------
ATHB1
--------->
AHL20(2)
--------->
ARR14(2)
<---------
ICU4
----------->
GT1
--------->
TOE2(3)
<---------
ATHB12
<---------
AHL20(1)
--------->
ATHB12
<-----------
GT1
--------->
AHL20(2)
<-------
<---------
YAB1
<-------
TEIL
----------->
GT1
--------->
ICU4
--------->
AHL20(1)
<
--------
At4g35610
---------->
DOF2
<-----------
GT1
<---------
ATHB51
<---------
ARR11(3)
-------
cagatgattaaaatagtttcattaaaccgatttggtttaatacggtttagtttttcattcaataattatgtttaccaatatatatcaaacatttagtctt
18649000
<---------
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(2)
<-----------
HVH21
<---------
CCA1(1)
------>
ZmHOX2a(1)
<---------
RVE1(1)
--------------->
AGL15
--------->
GLK1(1)
<---------------
AGL15
<---------
ARR14(2)
----------------->
AGL1
<----------
DOF2
<---------
AHL20(1)
--
ZAT6
<---------
ARR11(3)
--------->
AHL20(2)
----------->
GT1
-----------
GT1
--------->
ARR11(3)
<---------
AHL20(2)
--------->
At4g35610
-->
TOE2(3)
--------->
AHL20(2)
--------->
ARR14(2)
<------
ZmHOX2a(2)
-----
aatttcctgttagagcaaacaaacaaattcaataacatcttttccatcggatattttattttattttttattcgatcaactcaagtagttacaatgaagt
18649100
<---------
AHL20(2)
--------->
AHL20(2)
--------->
ATHB51
--------->
ATHB12
--------->
ICU4
--------->
AHL20(2)
---------->
DOF2
-
--------->
YAB1
<------
ZmHOX2a(1)
<-----------
RAV1(1)
<---
---->
ALFIN1
<---------------
AtSPL8
<---------
TOE2(3)
------->
TEIL
<-------
gtttgtgtaatgtaatgggggacatagtaatgaaaatgaaataaggaattatttggcaaagcatgcttagtgtatgttggattatttcttagttgatatt
18649200
<---------
ARR11(3)
<---------
DAG2
--------->
ANAC58
<-----------
RAV1(1)
--------->
ANAC58
<----------
DOF2
<---------
AHL20(2)
<---------
ARR14(2)
<---------
AHL20(1)
<-----------
ARR10
--------->
YAB1
<---------
AHL20(2)
--------->
ARR14(2)
<---------
ICU4
--------->
AHL20(1)
<---------
ARR11(3)
--------->
YAB1
<---------
AHL20(2)
--------->
ARR11(3)
--------->
ICU4
--------->
AHL20(2)
-------->
ANAC55(2)
<---------
ATHB12
<----------
DOF2
--------->
ANAC46
--------->
LBD16
------
AHL20(2)
<----------
DOF2
--------->
REM1(1)
--------->
AHL20(2)
--------->
LBD16
--------
AGL15
<---------
ZAT18
<---------
YAB1
---------->
ID1
<---------
ICU4
<---------
AHL20(2)
---
ttaagtatctcctttgtgggctttttccaattatcatgggctacattttgttcttttaattaattaatgcaagacatttttttttaaaaaccccgagaaa
18649300
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AGI:
At1g50330.1
Description:
pseudogene, similar to pectin methylesterase, blastp match of 57% identity and 9.8e-69 P-value to GP|20269071|emb|CAD29733.1||AJ441325 pectin methylesterase {Sesbania rostrata}
Range:
from: 18647985
to: 18648822
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.