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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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<---------
ICU4
<--------
ATHB1
<---------
AHL20(2)
--------->
TOE2(3)
========
=====================================
HOX2a_HOX2a
------>
ZmHOX2a(1)
----------->
GT1
------>
ZmHOX2a(2)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
ARR11(3)
--------->
ARR14(2)
--------->
AHL20(2)
--------->
ARR11(3)
<---------
AHL20(2)
<---------
YAB1
<---------
ARR14(2)
--------->
AHL20(2)
<---------
AHL20(1)
<---------
AHL20(2)
<---------
YAB1
<-------
GAMYB
--------->
AHL20(2)
<----
<---------
AHL20(2)
--------->
YAB1
--------->
AHL20(1)
<----
--------->
AHL20(2)
--------->
AHL20(2)
===========================
HOX2a_HOX2a
--------->
AHL20(1)
--------->
ICU4
<------
ZmHOX2a(1)
<---------
ARR11(3)
--------
DOF2
<---------
AHL20(1)
--------->
YAB1
==========================
HOX2a_HOX2a
-------
DAG2
<-----------
GT1
--------->
ARR11(3)
<---------
ANAC58
<------
ZmHOX2a(1)
>
TEIL
<---------
YAB1
--------->
YAB1
<------
ZmHOX2a(2)
<---------
ANAC58
=============
cttttccttctgattttgtttttaacaaatataatttataagatcgttaataatttttgtttgatttcttgcaggaaaataaaatatgtaggatcctcct
17943400
<---------
YAB1
--------->
AHL20(2)
<---------
At4g35610
================
HOX2a_HOX2a
<---------
ZAT6
-----
DAG2
------>
ZmHOX2a(2)
<------
ZmHOX2a(1)
------
DOF2
--------->
At4g35610
<---------------
AGL15
================
HOX2a_HOX2a
---------->
DOF2
----------->
GT1
ttttctatttgatctcatcttccaaatttttataaacatttgagcaattgatgtcaaagtgaatacaaaaacaggaaatatagtagtcttatataagaca
17943500
<---------
ICU4
--------->
ICU4
--------->
YAB1
--------->
TOE1(3)
<---------
MYB59
--------->
ZAT6
<---------
AHL20(2)
--------->
YAB1
<---------
LBD16
<---------
ICU4
---------->
DOF2
<-----------
GT1
<---------
AHL20(2)
--------->
TOE2(3)
----------->
GT1
attgtttactatataacaactatatgcaaacaagaattaatctacggatttaaacctaaactaaaaatgatcactaacttgatgaacaagttaaaagccc
17943600
-----
------------>
CBF
<------
ZmHOX2a(2)
<---------
ATHB12
<---------
LBD16
--------->
GLK1(2)
---------->
DOF2
------------>
CBF
-----
------>
MYB46(1)
---------->
DOF2
<---------
GLK1(2)
<XXXXXXXXXXXXXXXXXXXX
MIR863-5P
<-----
------>
MYB83
---------->
DOF2
--------->
YAB1
--------->
CCA1(2)
--------->
MYB52(1)
----------
aaacctatctctggatcagaaagaaagagaagctaatcagagtctcagagagagatttgggcttaaaaagacataacaggcccaataactcaattaagcc
17943700
<---------
ANAC58
----------->
GT1
<---------
RAP2.3(2)
<---------
ANAC55(1)
<---------
ANAC46
<---------
DEAR3(1)
<---------
ANAC58
--------->
ATERF1(1)
--------->
CCA1(2)
------------>
AGL1
<---------
ZAT18
--------->
ETT(2)
*
TSS
--------->
LBD16
------->
CBF
----------->
RAV1(2)
--------->
LBD16
<---------
ATERF1(1)
--------->
GLK1(2)
------>
ZmHOX2a(1)
------------
AG
--------->
ZAT18
---------->
DOF2
<-----------
ARR10
<---------
LBD16
<---------
ARR14(2)
>
DOF2
------->
GAMYB
<---------
ANAC55(2)
------>
NtERF2
<---------
GLK1(2)
--------->
ARR14(2)
caattcggataacacccctgcgcacaagatgatgcgtgaaaagataagtcgacggctcttctccgat
aagattccggtgagaaacgagcaggtcctgtct
17943800
<---------
ETT(2)
---------->
ARF1
--
------>
ZmHOX2a(1)
---
<---------
ARR11(3)
--------->
TOE2(3)
<---------
At4g35610
<--
------->
TEIL
<---------
YAB1
--------->
TOE1(3)
<---------
ALFIN1
--------->
At4g35610
<--
tcttatgaactcaatttcttcatttctgattctataaaacatccttaaaaac
atgtctaccacattgttgagaacaattcagctaaaccagttctcactt
17943900
--------->
HSFB2a(2)
<---------
ANAC46
<---------
HSFB2a(2)
<---------
ANAC58
<---------
ANAC46
------>
NtERF2
<---------
ANAC58
<---------
ARR11(3)
--------->
DEAR3(1)
--------->
STY1(2)
--------->
ARR11(3)
------->
GAMYB
<---------
STY1(2)
<-----------
HVH21
--------->
MYB52(1)
------->
ANAC46
<-----------
GT1
<---------
AtMYB61
--------->
ANAC58
------>
HSFB2a(2)
----------->
GT1
--------->
LBD16
--------->
ANAC58
-------
HSFB2a(2)
<------
ZmHOX2a(1)
<---------
MYB52(1)
--------->
ANAC58
------->
TEIL
---
-------
LBD16
<------
ZmHOX2a(1)
<---------
LBD16
--------->
ANAC58
---------->
DOF2
------
ctcggaactagcttgttaagaaggagaaggagtaacaacttctccgtgaggtcttgtggaagccaaacaacgacgacccatgaagctaaacagtcttctc
17944000
-------->
P
------>
MYB83
------->
GAMYB
--------->
MYB46(3)
<---------
MYB52(2)
<---------
MYB55(2)
-------->
P
--------->
ANAC58
--------->
ANAC58
--------->
ANAC58
--------->
At5g28300
--------->
ANAC46
<---------
YAB1
--------->
At4g35610
--------->
ANAC58
--------->
GLK1(2)
--------->
ZAT2
<--------
P
---------->
DOF2
<---------
GLK1(2)
<---------
At4g35610
--------->
ZAT2
-------->
RAV1(1)
--------->
TOE2(3)
----------->
ARR10
--------->
GLK1(2)
--------->
At4g35610
--->
HSFB2a(2)
<----------
ID1
------>
MYB46(1)
------->
TEIL
<---------
At4g35610
caacaagggttgctccaaaaaaccacaaaagcaaccaacttgatgagattctgagagattacgaagctgtaattgggatagagactcatgttcagctctc
17944100
<------
<------
<------
<----------
DOF2
<---------
ANAC58
<---------
ANAC58
------>
ZmHOX2a(1)
<---------
ANAC58
<----------
DOF2
<---------
TOE2(3)
---------->
ID1
<---------
AtLEC2
<---------
DAG2
<---------
At5g28300
--------->
ANAC58
----------->
RAV1(2)
---------->
DOF2
<---------
ICU4
--------->
ANAC58
<---------
ANAC58
tacattgacaaaagccttttgtagttgctctaacaattacggttcttatccaaacacaagtatttgtcctgtttgtatgggtttgcctggtgctttgcct
17944200
<---
<---------
ZAT6
<------
---
ANAC58
<------
MYB83
----------->
GT1
==================
---
ANAC46
<------
MYB46(1)
<----------
DOF2
---------->
ID1
<------
ZmHOX2a(1)
---
ANAC58
<---------
MYB46(3)
<---------
ANAC46
<---------
YAB1
==================
gttttgaattccaaagttgttgaatttggtgttagattgggtttagctttgaattgtgatttgtctcttaagtctaaattcgataggaagcagtattttt
17944300
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AGI:
At1g48520.1
Description:
GATB (GLU-ADT SUBUNIT B); glutaminyl-tRNA synthase (glutamine-hydrolyzing). similar to unnamed protein product [Vitis vinifera] (GB:CAO71491.1); similar to hypothetical protein OsI_035196 [Oryza sativa (indica cultivar-group)] (GB:EAY81237.1); similar to Aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94201.1); contains InterPro domain GatB, central region; (InterPro:IPR006107); contains InterPro domain Glutamyl-tRNA(Gln) amidotransferase B subunit; (InterPro:IPR004413); contains InterPro domain GatB N-terminal region; (InterPro:IPR006075); contains InterPro domain GatB/Yq
Range:
from: 17943768
to: 17946490
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.