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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
======================
<-----------------
AGL3
----------------->
AGL3
<-----------------
AGL2
--------->
ARR11(3)
<---------
AHL20(2)
<---------
YAB1
--------->
ARR11(3)
<---------
TOE2(3)
<---------
AHL20(2)
<-------
<---------
AHL20(2)
<---------
ARR11(3)
---------
<-----------
GT1
--------->
AHL20(2)
<---------
AHL20(1)
--------------->
AGL15
<---------
GLK1(2)
--------->
AHL20(2)
--------->
AHL20(1)
<---------------
AGL15
agtagatttatagaattttttcttctcaatataagatgatgcaaattaataagattatgtcaaatattttttttatattgttctatttttggctaatcta
17715900
---------->
DOF2
<---------
AHL20(2)
<---------
AHL20(2)
<------
MYB46(1)
----------->
GT1
<---------
ARR11(3)
<---------
YAB1
<------
MYB83
<---------
MYB46(3)
--------->
ARR11(3)
<---------
AHL20(2)
<--------
<--------
P
<---------
TOE2(3)
--------->
AHL20(2)
<-----------
RAV1(1)
========
MADS_MADS
---------->
DOF2
<---------
AHL20(2)
<---------
YAB1
--------
AGL15
--------->
AHL20(2)
<---------
AHL20(2)
---------->
DOF2
<---------
YAB1
>
GLK1(2)
<---------
AHL20(2)
<---------
CCA1(2)
----------->
GT1
--------->
ICU4
tatggtagttaattttaaaaattaaagatgtcatttaaagtctgcatatatttttataaaaaataagttatatgcaaagtaatgggattattgttggttt
17716000
<----------
DOF2
--------->
AHL20(2)
<---------
At4g35610
<---------
DAG2
<---------
ZAT18
<---------
ALFIN1
---------->
DOF2
<----------
DOF2
<---------
ICU4
----------->
GT1
<----------
DOF2
--------->
YAB1
--------------->
AtSPL8
<---------
DAG2
<---------
AHL20(2)
<---------
AHL20(2)
<---------------
AtSPL8
--------->
YAB1
-
-
MYB46(3)
--------->
At4g35610
--------->
TOE2(3)
---------->
DOF2
<----------
DOF2
<-------
gggccttttgtgagctcttttttaatcttcacaccttataaaattgggcattcttggaaagtacaaataaagcttttactcatactttggactcaatctt
17716100
--------->
LBD16
--------->
HSFB2a(2)
<---------
ANAC46
<---------
HSFB2a(2)
----------------->
AGL1
--------------->
AGL15
<---------------
AGL15
<
<-----------------
AGL1
<----------
ID1
-
<----------
DOF2
<---------
LBD16
--
<---------
ANAC58
<---------
ARR14(2)
<----------
DOF2
<-
<----------
DOF2
--------->
ARR14(2)
<---------
ANAC58
----
<---------
ANAC58
<---------
GLK1(1)
<-----------
GT1
--------->
At4g35610
--------->
DOF2
<---------
ANAC58
--------->
GLK1(1)
<-----------
GT1
<---------
At4g35610
--
ATHB12
<---------
ANAC58
<----------
DOF2
<---------
ATHB12
<---------
ANAC58
<---
tgaaaagagtatttctttccgtctttacaaaatttggcatttccggagagggacaaatgatgtttttacccttgctttcccttac
tgctgaaaactccat
17716200
---------->
ID1
---------
ICU4
<----------
DOF2
-------->
ATHB12
<---------
ZAT2
------->
ICU4
--------->
ZAT2
--------
YAB1
<---------
ANAC58
----->
YAB1
--------->
ZAT6
<---------
DAG2
------
ICU4
<---------
YAB1
<---------
ANAC58
<---------
ALFIN1
<-----------
HVH21
<--
catcattgtcgtcttatgctcgcttctcactaccgtgctcgcttttttagcaccatctccatcaattctatcaacgctgtcattttcaattctatcaata
17716300
--
<-
<-
<--
--------------->
AGL15
--------->
AHL20(2)
----------------->
AGL3
--------->
YAB1
<---------
ARR11(3)
------------>
CBF
------------>
CBF
--------->
ARR11(3)
----------------->
AGL2
<---------
ATHB12
--------->
AtMYB61
--------->
ZAT14
<------------
CBF
---
--------->
MYB46(3)
<---------
ZAT18
--------->
ARR11(3)
---
<----------
DOF2
<---------
ARR11(3)
--------->
ZAT18
<---------
ARR11(3)
------
-------
ALFIN1
--------->
ARR11(3)
<---------
ZAT14
<<<<<<<<<
RAP2.2
--------->
WOX13(1)
ccacctctttcgccttcaattccaaacat
ctctaccaccaagataatgtatagtgaacttaatgactccaattttagatattgatcaaatcaattaaaaa
17716400
<---------
AHL20(2)
<---------
AHL20(2)
<-----------
GT1
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(1)
<---------
AHL20(2)
------->
AHL20(2)
--------->
AHL20(2)
<--
--------
AHL20(2)
--------->
ANAC58
<---------
AHL20(2)
---
--------
YAB1
--------->
ANAC58
<---------
AHL20(1)
<--
-------
AHL20(1)
---------->
DOF2
--------->
AHL20(1)
---
------>
AHL20(1)
<---------
ZAT6
<---------
ARR11(3)
----
------>
AHL20(2)
<---------
At5g28300
--------->
AHL20(1)
<---
--->
AHL20(2)
---------->
DOF2
<-----------
GT1
<---------
AHL20(1)
------
tataattttttttctcaaaagacataacccaaactaaaattttagatgttactgttacaaagcaaaacaaaatatttcgaatttattttcaaatctaaaa
17716500
------
<-----
<------------
CBF
<xxxxxxxxxxxxxxxxxxxx
<---------
RVE1(1)
--------->
DREB2C(2)
-------
AHL20(1)
<---------
ARR14(2)
<---------
CCA1(1)
<------
NtERF2
------
------>
AHL20(2)
<---------
GLK1(2)
<---------
ARR11(3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
-------
AHL20(2)
<------------
CBF
<<<<<<<<<
RAP2.2
------>
NtERF2
<-----
------>
AHL20(1)
--------->
ATHB12
<---------
ARR11(3)
--------->
ARR11(3)
<---------
ANAC55(2)
----->
AHL20(2)
<---------
YAB1
--------->
ANAC58
<-----------
GT1
<---------
ARR11(3)
<---------
TOE2(3)
------
AHL20(2)
<---------
MYB46(3)
--------->
ANAC58
<---------
AHL20(2)
------>
NtERF2
<---------
ANAC46
--->
YAB1
<-----------
GT1
--------->
ARR14(2)
--------->
ARR11(3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
taaatttgaaatttacatgtttgttattggcaaattctcaagaaattttagatatttacattgatcaaaacatctctgccaccgatataacgtatagtga
17716600
<---------
ATHB12
------------>
CBF
<---------
WRKY38(1)
--------->
MYB46(3)
<<<<<<<<<<
WRKY38
<-----------
GT1
<<<<<<<<<<
WRKY43
--
--------->
MYB52(1)
<<<<<<<<<<
WRKY26
---------->
DOF2
--
--->
ZAT18
<-----------
HVH21
------>
ZmHOX2a(1)
<xx
----
ZAT18
<------------
CBF
--------->
TOE2(3)
----
xxx
smallRNA(fl3)
<<<<<<<<<<<<<<<<<
LFY
<-----------
GT1
<---------
ZAT6
--->
ZAT14
<---------
HSFB2a(2)
--------->
AHL20(2)
<---------
At5g28300
----
ZAT14
--------->
HSFB2a(2)
<---------
AHL20(2)
<-----------
GT1
acttaacgactccaattctagacattggtcaaatcaactaaaatttatatttttcctcaaaagaaataacccaaactaaatttttagatgttactgttac
17716700
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(1)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(1)
<---------
ARR11(3)
<---------
AHL20(1)
<---------
AHL20(2)
--------->
ARR14(2)
--------->
AHL20(1)
--------->
AHL20(2)
<---------
GLK1(2)
<---------
ARR11(3)
<---------
AHL20(2)
<---------
ARR14(2)
------->
ANAC58
<---------
AHL20(2)
<---------
WOX13(1)
--
------->
ANAC58
--------->
AHL20(2)
--------->
ATHB12
--------->
ANAC58
-----
xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
AHL20(2)
<---------
YAB1
--------->
ANAC58
<------
------>
DOF2
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<-----------
GT1
----------->
GT1
-------
aaagcaaaacaaaatatttcaaatttattttcgaataaaataaatttgaaatttacatgtttgtgattggcaaattctcaagaaattcgcgactaaaatc
17716800
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AGI:
At1g48010.1
Description:
invertase/pectin methylesterase inhibitor family protein. similar to enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] (TAIR:AT1G50325.1); similar to pectinmethylesterase inhibitor [Actinidia deliciosa] (GB:BAC54966.1); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501)
Range:
from: 17715160
to: 17716329
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.