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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
-
<
----
<----
-------
<------
-------
<-------
<-------
--------->
ARR14(2)
--------
<-----------
GT1
--------->
YAB1
<---------
YAB1
--------
--------------->
AtSPL8
<-------
TEIL
<-----------
GT1
--------
--------->
At4g35610
----------->
GT1
------>
ZmHOX2a(1)
--------->
YAB1
---->
RVE1(1)
<-----------
GT1
<---------
GLK1(2)
<------
ZmHOX2a(1)
<---------
ATHB12
atcagttgtaccatatatactacttcaaacagttatatcagattcataaatggagagtgaggaggtcctaaaattatcgttcttccaaatcaaaaattat
17568600
---
--------
<---------
YAB1
<--------
<---------
AHL20(2)
--------->
ANAC46
--------->
ATHB12
--------->
O2
-------->
AHL20(2)
--------->
bZIP60(1)
---------
AHL20(2)
--------->
TGA2(1)
----->
AHL20(2)
<---------
TGA1a
-----
YAB1
<---------
bZIP60(1)
->
ATHB1
<---------
O2
---
ICU4
<----------
DOF2
--------->
TGA1a
-->
YAB1
<---------
GLK1(2)
<----------
--
YAB1
<---------
ZAT6
<---------
YAB1
===============
bZIP_DOF
--
AHL20(2)
<---------
ANAC46
<---------
CCA1(2)
---------->
DOF2
->
AHL20(1)
--------->
DAG2
<---------
ANAC58
--------->
DAG2
---------->
DOF2
<--------
->
ICU4
----------->
GT1
---------->
DOF2
--------->
YAB1
===============================================
bZIP_DOF
->
AHL20(2)
---------->
DOF2
<---------
ANAC58
---------->
DOF2
========================
bZIP_DOF
tatttattagagtaaaaagttgcgctaaaggaatttcttatcttgattcttttacataaagtatgctctgttagaaaaaaaaagaattcaaagacgtcag
17568700
<------
ZmHOX2a(2)
<---------
GLK1(1)
<<<<<<<<<
GATA-1
<<<<<<<<<
GATA-2
<---------
ICU4
--------->
YAB1
--------->
MYB52(1)
--------->
KAN4(2)
<<<<<<<<<
GATA-4
--------->
AHL20(1)
<<<<<<<<<
GATA-3
----------->
GT1
<---------
ARR11(3)
<---------
AGP1
--------->
ANAC58
<---------
AHL20(1)
<---------
ARR11(3)
<---------
ANAC55(2)
--------->
YAB1
<---------
ATHB51
<---------
ATHB12
--------->
CCA1(2)
------>
GLK1(1)
<---------
AHL20(2)
--------->
ANAC46
--------->
TOE2(3)
--------->
ANAC46
->
TGA2(2)
--------->
AHL20(1)
--------->
WOX13(1)
------>
MYB46(1)
--------->
ARR14(2)
---
HVH21
--------->
YAB1
--------->
ARR11(3)
------>
MYB83
--------->
AHL20(2)
-------------
TaNAC69(2)
<---------
CCA1(2)
----------->
RAV1(1)
--------->
ANAC58
---
TGA1
--------->
AHL20(2)
------>
ZmHOX2a(2)
--------->
MYB46(3)
<---------
ARR14(2)
<----
aaatcaaaatattcccaaaaaataatggttttagatctctccaatcaactaattgaaccaacatcaaaattttaaaatacgcgaatagtatatcaatgct
17568800
--------->
YAB1
<---------
ARR11(3)
--------->
ARR11(3)
<---------
GLK1(2)
<-----------
GT1
--------->
YAB1
--------->
ARR14(2)
--------->
YAB1
------
-----
ANAC46
--------->
ARR14(2)
<---------
ARR14(2)
------------>
CBF
<-------
gtgtatcaaaatctcataatccaaaatactctatccaaactcgaagagaatacacccatataaccatatcaatagagaataatacaaaaactgatttaaa
17568900
------>
MYB46(1)
-
------>
MYB83
--
--------->
AtMYB61
---
------->
GAMYB
*
TSS
---
--------->
MYB46(3)
<---------------
AtSPL3
--------->
AHL20(2)
-------
<-----------
TBP
<-----------
GT1
<---------------
AtSPL8
----------->
GT1
-------
---->
DOF2
--------->
YAB1
<----------
DOF2
----------->
GT1
-------
--
AHL20(2)
------------>
CBF
---------->
DOF2
<---------
ZAT6
--------->
CCA1(2)
-------
agcgttttgtagcgaaacacaattttaaccatcccaaaagcctttttggt
actgttaccagagtaagagacgataaaatacaaacaaaaacaaaacatgc
17569000
--------->
AHL20(2)
--------->
AHL20(2)
------>
GAMYB
------->
MYB46(3)
------>
ANAC58
------>
ANAC58
-->
AtLEC2
---------->
DOF2
-->
ANAC46
<----------
ID1
<----------
DOF2
-->
ANAC58
---------->
DOF2
---------->
DOF2
<----------
DOF2
-->
ANAC58
--------->
AHL20(2)
----------->
GT1
--------->
ZAT18
<-----------
GT1
<---------
ALFIN1
aaccaaaaaaaataaaaaagaagagacaaaggggagagagagaaaagaagagcgaacaaattccttctttttcccctctttctctctctctcccactctc
17569100
--------->
At5g28300
<---------
MYB46(3)
--------->
ALFIN1
--------->
AtLEC2
<---------
MYB52(1)
<---------
ICU4
--------->
ARR11(3)
<---------
At4g35610
<---------
YAB1
<-----------
GT1
--------->
GLK1(2)
<---------
ZAT2
<<<<<<<<<
TBF1
<-----------
GT1
----------->
RAV1(1)
<-----------
RAV1(2)
tcatcttcttcttcttatgattttcaacttattacaacaacaacaacaacaaaataatcttgcaaagtttcagtctcaggtggttcacagttaatgctac
17569200
<---------
TOE1(2)
<-----------------
AGL1
------->
TEIL
<---------
TOE2(2)
<---------
ANAC46
<---------
YAB1
<---------
MYB52(1)
<------
MYB46(1)
--------->
YAB1
<---------
ANAC58
<------
MYB83
<---------
ARR11(3)
<---------
ICU4
<---------
ANAC55(2)
--------->
HSFB2a(2)
--------->
ARR11(3)
--------->
ICU4
<---------
ANAC46
<---------
HSFB2a(2)
<-----------
GT1
<---------
ATHB12
<---------
ANAC58
--------->
At4g35610
<---------
ICU4
<-------
TEIL
ttgcaatgatgaatccatcccaatttc
gtaagttaatcttctcttctgaaaattgaatttggtgtatcaattcttacattatcttgaagattcatctctg
17569300
<------
NtERF2
--------->
LBD16
---------->
DOF2
--------->
ETT(1)
<------
ZmHOX2a(2)
<---------
ANAC46
<---------
ARR14(3)
<---------
LBD16
--------->
ARR11(3)
--------->
MYB52(1)
--------->
ARR14(3)
----
<---------
GLK1(1)
<---------
ARR14(2)
<---
--------->
GLK1(1)
--------->
ARR14(2)
-----
<---------
ARR14(2)
<---------
ARR11(3)
<----
--------->
ARR14(2)
--------->
AGP1
<-----
<---------
LBD16
--------->
ETT(1)
----------->
GT1
<----------
DOF2
<---------
ICU4
<---------
AHL20(2)
---------->
ID1
----------->
GT1
------>
ZmHOX2a(2)
<---------
AHL20(2)
aatttctcaaatttatgggggttttttgtttgtcggaattgccggagaaattggaaaaaacgagatctttgagtaaagggtttgtttaatctttagtctt
17569400
<---------
HSFB2a(2)
--------->
HSFB2a(2)
------>
ZmHOX2a(2)
--------->
CCA1(2)
<------
ZmHOX2a(2)
<---------
ARR11(3)
--------->
ARR14(2)
--------->
ARR11(3)
<---------
ARR14(2)
==========================
HOX2a_HOX2a
===========================
HOX2a_HOX2a
------>
ZmHOX2a(1)
<---------
ARR14(3)
--------->
TOE1(3)
--------->
AGP1
--------->
TOE2(3)
<---------
AGP1
<----------
DOF2
--------->
ARR14(3)
<---------
ANAC58
<---------
CCA1(2)
<---------
ANAC58
----------->
ARR10
----->
ATHB12
<---------
ICU4
------
ICU4
<---------------
AGL15
------>
MYB83
---->
ICU4
--------------->
AGL15
------>
MYB46(1)
-----
YAB1
<-----------------
AGL2
<---------
MYB59
------>
ZmHOX2a(1)
-
-----
DOF2
<---------
At4g35610
<<<<<<<
ZML2
<---------
ATHB12
-
tattgctttccttaagctaattttggcagatctggaacataaaccctagaacaagaccaaatcagtgtctccttactcttagggattttagtctctgtga
17569500
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AGI:
At1g47740.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61202.1); contains InterPro domain Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580)
Range:
from: 17568951
to: 17571737
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.