Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <---------ANAC58                                       <---------ANAC46                                       <---------ANAC58                                     <------MYB83                                     <------MYB46(1)                                    --------->MYB55(2)                                    <---------AtMYB61                                    <---------MYB46(3)                                    --------->MYB111(2)                                   <---------MYB55(1)                                   <--------P                                  <---------MYB52(1)             --------->ETT(1)     <-------GAMYB     --------->TOE2(3)        xxxxxxxxxxxxxxxx>smallRNA(i)--------->MYB46(2)  --------->At4g35610      <---------YAB1   <---------TOE2(3)           <---------YAB1         --------->ICU4        <xxxx   ------>ZmHOX2a(1)   <---------TOE1(3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <------- ----------GT1    <---------MYB46(3)--------->MYB111(1) <---------At4g35610       ---------->DOF2 --------GT1---------->ID1     <---------LBD16   <-----------GT1          <---------MYB52(1)<xxxxxxxx   ttctccttatacttgtcggattgttgaggtaactccggttggtgtgttttgttaccatagcagacattttgaagccattagtataaaagacttgtgcatc  11479400                                 --------->ZAT14                                 --------->At4g35610                                 <---------At4g35610                                <xxxxxxxxxxxxxxxxsmallRNA(s)                            <xxxxxxxxxxxxxxxxsmallRNA(s)                            <xxxxxxxxxxxxxxxxsmallRNA(i)                         ------->GAMYB                         ----------->HVH21                         xxxxxxxxxxxxxxxx>smallRNA(i)                        <---------MYB55(2)                        --------->DEAR3(2)                       --------->ANAC46                      xxxxxxxxxxxxxxxx>smallRNA(i)                      xxxxxxxxxxxxxxxx>smallRNA(s)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     <---------ALFIN1                    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    xxxxxxxxxxxxxxxx>smallRNA(i)                    --------->MYB46(3)  ------>ZmHOX2a(1)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   xxxxxxxxxxxxxxxx>smallRNA(i)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <----------DOF2--------->LBD16                                                 <------              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                           -------             ---------->ID1--------->MYB52(1)                                                 -------             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                            <------          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <---------ZAT14                        --------         <----------DOF2--------->MYB46(3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    ----------->GT1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------AHL20(2)                      ----------->HVH21  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <----------DOF2                         <---------WRKY38(1) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ZAT2 <---------ICU4                  <---------WRKY12 --AtLEC2<---------MYB52(1)<xxxxxxxxxxxxxxxxsmallRNA(s)      <--------P        --------->WRKY18(1) xxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(s) <---------YAB1      <-----------HVH21   gcctactatccctttgtctttatccacccgaccggagcagtcctttttaatcagtgtgttctggttgtcatcaacaatggggtcaagggacagaaataaa  11479500                                                                                           --------->RAP2.6(2)                                                                                           ==========                                                                                           <---------ATERF1(1)                                                                                           --------->DEAR3(1)                                                                                           ------->GAMYB                                                                                           --------->AtMYB61                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          --------->DEAR3(2)                                        --------->ZAT6xxxxxxxxxxxxxxxx>smallRNA(s)        --------->SPL7                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              --------->MYB46(3)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              ------>NtERF2                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                <---------ALFIN1                                xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    --------->DEAR3(1)                              <---------ICU4       <---------ANAC58                    <---------ETT(1)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    ----------->HVH21                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     --------->MYB46(3)                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      <xxxxxxxxxxxxx                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        --------->DEAR3(2)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        <------NtERF2                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     ------->GAMYB                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      <xxxxxxxxxxxxxxxxsmallRNA(i)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      ------->MYC3      ==================         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------ANAC46               --------->ANAC58===         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <---------ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->YAB1       <-------MYC3     xxxxxxxxxxxxxxxx>smallRNA(s)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->ANAC58---    <-------TEIL      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)    --------->YAB1    =====================  <---------GLK1(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->WOX13(1)   ---------->DOF2   --- ---AHL20(1)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->MYB46(3) ======================== -->AHL20(2)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxx -->AHL20(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     --- ---AHL20(2)     --------->ANAC46   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <----------DOF2  <xxxxxx ->AHL20(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)----------->GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ttcagattcatcgttgtatacttcacatccaaaaattgccttacactcatattgctggtaacaatcacatgcgattttgctgtaacgccccgaccgcccc  11479600            ==================bZIP_DOF                    --------->ANAC58            --------->ANAC46                              --------->ANAC58            --------->ANAC58                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)            --------->O2                              <------MYB83            --------->ANAC58                          <------MYB46(1)            --------->TGA1a                          --------->MYB46(2)            =================================================MYC_MYB            ===============================================MYC_MYB      <---------PCF2                                 <---------AtMYB61     <------MYB46(1)                                 --------->MYB111(2)     <------MYB83                                    --------->MYB111(1)    <---------MYB46(3)                               <---------MYB46(3)   --------->ALFIN1   <---------ANAC58              <---------MYB55(1) =====================MYC_MYB                       <--------P xxxxxxxxxsmallRNA(si3)                            <-------GAMYB  <-------TEIL =====================MYC_MYB                     <---------DEAR3(2)       <----------DOF2 =====================MYC_MYB                    <---------DEAR3(1)        xxxxxxxxxxxxxxxx>smallRNA(i) --->MYB83  <---------TGA1a                     <xxxxxxxxxxxxxxxxsmallRNA(i) =====================bZIP_DOF                 ------------>AtMYB77 <---------HSFB2a(2) --->MYB46(1)      <----------DOF2            ----------->HVH21 <---------SPL7---------->DOF2 =====================bZIP_DOF   <-----------HVH21<---------MYB46(3)--------->HSFB2a(2) xsmallRNA(s)    ------>ZmHOX2a(1)         --------->ARR14(2)  --------->HSFB2a(1) ----->P    ================================================MYC_MYB<---------LBD16 xxxxxxxxxxsmallRNA(i)<---------ANAC58     <---------ARR14(2)  <---------HSFB2a(1)   taccagtgggtctcacgtcctctttcgcgtccatgggtcatcccctatccgacggttggtatgcaacgttcgggaggctttaaagacttgttatcgatct  11479700                        --------->TOE2(3)                                                         <--                        <----------DOF2                                                           ---                        --------->TOE1(3)                                                         <--                     <-----------GT1                                                              ---         <---------AHL20(1)                                                                     -----         <---------AHL20(2)                                                           <------------CBF         --------->AHL20(2)                                                        ------------>CBF<-         --------->AHL20(1)                  <---------GLK1(2)                  <------------CBF-----        <---------AHL20(2)          <xxxxxxxxxxxxxxxxsmallRNA(i)          --------->ANAC58      <----        --------->AHL20(2)     ---------->DOF2                            --------->ANAC58      <----   acaaatcaaattaaatttgggttttactttaacaaaagagatgtctagactctctatgtaataaccaaaactatgtaggcaaaattgcaattgtagaaaa  11479800           <----------DOF2    ------------>CBF -------ARR11(3) ------>AHL20(1) -------AHL20(1) ------>ARR11(3)                <------------CBF ---->AHL20(1)              --------->TOE1(3)              <---------MYB52(1)        --------->ANAC46 --------YAB1----------->TBP--------->TOE2(3)       --------->SPL7                   --------->ANAC58 ---->ARR11(3)              <---------MYB59   *TSS<---------SPL7                     --------->ANAC58 -----ARR11(3)     --------->TOE2(3)      ------->GAMYB------>NtERF2--------->MYB46(3)     ---------- -----AHL20(1)     --------->TOE1(3)   --------->MYB52(1)<---------MYB46(3)    ------>ZmHOX2a(1)   tatttttgcaatgctttaaaaccctaaaaacctaaattgaacaacggactctcgttcggccgtttcatcaacaactctctcctgtaaacgaaacaaagaa  11479900                              --------->LBD16             ----------->HVH21                              ------>NtERF2               --------->WRKY12                             <---------DEAR3(1)           --------->WRKY38(1)                            <---------LBD16             <---------At4g35610                --------->ARR11(3)                      --------->At4g35610                <---------ARR11(3)             --------->ETT(2)                  --------->ANAC58                <-----------ARR10  ------->TEIL<---------ETT(2)                  --------->ANAC58          --------->ANAC58<---------ARR14(2)  <------NtERF2     ------>MYB46(1) --------->DAG2          --------->ANAC58--------->ARR14(2) <---------RAP2.6(3)-------->P >>>>>>>>>TBF1 <---------ANAC58       <-----------HVH21    <-----------HVH21  ------>MYB83   ---------->DOF2     <- <---------ANAC58--------->At4g35610  <----------DOF2  <---------TOE1(1)>>>>>>>>>TBF1       --------- >DOF2  ---------->DOF2--------->ANAC46     --------->DEAR3(1) ----------->RAV1(1)       <----------ID1   atggctggacaaaagcaagagcttcccgtctccggcgaacctttagccgtcgagagtccgatgaccaacaagaagaagaagaaaagcaagaagaacaaac  11480000                                                  <---------ZAT14                         --------->TOE2(2)                                                 <---------REM1(1)                        --------->TOE1(2)                                                 <---------ANAC46                        <---------ANAC55(2)                                            --------->MYB52(1)                           --------->ANAC58         --------->ARR11(3)            --------->ZAT18                 ---------->DOF2   --------->ANAC58     <------ZmHOX2a(1)                <-----------HVH21               --------->ICU4     --------->ANAC55(2) ------TEIL--------->YAB1    ----------------->AGL1              ----------->GT1   >>>>>>>>>TBF1 >MYB46(3) <---------ICU4    <-----------------AGL1     <------ZmHOX2a(1)       >>>>>>>>>TBF1   atacagaggaaaatcatgaagtcgaagaagtgcctcaagaggtcactaatggtgtagaggaagagttgagtaataaagagaagaagaagaaacgtaagag  11480100                                                                    <------ZmHOX2a(1)           <----                                                              --------->ARR14(2)         ------->GAMYB                                                              <---------ARR14(2)      --------->MYB52(1)                                       --------->LBD16       <------ZmHOX2a(1)        ----------->RAV1(1)                                      --------->LBD16      <---------TOE2(3)         --------->MYB46(3)                                      <---------ANAC46 --------->At4g35610        <---------ZAT18                               <------ZmHOX2a(1)       <---------ZAT2             --------->ZAT18    ---------->DOF2   --------->YAB1 <---------LBD16   <---------At4g35610        <---------ZAT14<--- <------ZmHOX2a(1) --------->YAB1<---------GLK1(1)     --------->ZAT2     <------ZmHOX2a(1)     -----   agaggagaaagagtctgagaagaataagaagaaggatgtcccggagaagaagcttgaagctgaggatttaggagaaggagagagtgaacaacagaaggtt  11480200                                      <----------DOF2                                    <---------ZAT2                                    <---------At4g35610                                    --------->ZAT2                                    --------->At4g35610              <------NtERF2              <---------ANAC46     ------->TEIL                     --------->LBD16         ---------->DOF2        --------->ANAC46                   --------->ETT(1)    <---------ANAC46            --------->ANAC58                   <---------ANAC46                <- ----------->HVH21     --------->ANAC58                      <---------ARR14(2)                    -- <---------YAB1        --------->ANAC58                      --------->ARR14(2)                ====== -----MYB46(3)--------->ALFIN1 --------->ZAT18     --------->At4g35610                         <----- ----GAMYB --------->DAG2 ---------->DOF2      <----------DOF2    <---------LBD16<<<<<<<<<RAP2.2   <- ---->MYB111(2) --------->ALFIN1--------->ANAC58   <---------At4g35610          <---------TOE2(3)  --   gttgtgactgggaaaggtgtggaagaagcaaagtacgcagctttgaagacttttgctgaatcgaatttgccggagaatgttttagattgttgtaagactt  11480300  Previous    Next  AGI:  At1g31960.1    Description:  unknown protein Range:  from: 11479113    to: 11479634    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g31970.1    Description:  STRS1 (STRESS RESPONSE SUPPRESSOR 1); ATP-dependent helicase. Identical to DEAD-box ATP-dependent RNA helicase 5 (RH5) [Arabidopsis Thaliana] (GB:Q9C551;GB:Q9ZS13); similar to ethylene-responsive DEAD box RNA helicase, putative (RH30) [Arabidopsis thaliana] (TAIR:AT5G63120.2); similar to Os07g0301200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059424.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76636.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67062.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-bindin Range:  from: 11479846    to: 11482870    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.