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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------>
YAB1
<---------
AHL20(2)
<----------
ID1
------
ATHB12
<---------
YAB1
----------->
GT1
<------
ZmHOX2a(1)
------
YAB1
--------->
AHL20(1)
---------->
DOF2
----------->
GT1
----------->
GT1
->
MYB46(1)
<---------
AHL20(1)
<---------
AHL20(2)
--------->
DAG2
----------->
GT1
->
MYB83
<---------
AHL20(2)
--------->
AHL20(2)
---------->
DOF2
--------->
YAB1
>
HVH21
--------->
AHL20(2)
--------->
YAB1
----------->
GT1
<---------
MYB52(2)
--
tcattttcaaaatgaattcaatttattattttgttagtaaatgacaatttaaaagagaaaaactgaaaaaagtgacaactaatcagagaggaaaattgat
10638500
<---------
ICU4
-------->
HAHB4
<--------
ATHB1
--------->
YAB1
<-----------
GT1
--------->
ICU4
<---------
ANAC58
<---------
ATHB51
<---------
ANAC58
<---------
DAG2
<-----------
GT1
<---------
ICU4
--------->
YAB1
<---------
RVE1(1)
<-----
<-------
TEIL
<---------
ATHB12
<---------
YAB1
<---------
ARR11(3)
<------
--------->
CCA1(2)
--------->
TOE2(3)
<---------
MYB59
<---------
GLK1(2)
<----------
DOF2
----->
TEIL
<-------
TEIL
<---------
ICU4
--------->
TOE2(3)
--------->
ARR11(3)
<---------
DAG2
gaattttgtaagatacatacacatctaatctttccataaatcattctaaactaccttattaataattctatagattttttcttgttaccactttttttaa
10638600
------->
GAMYB
----------->
HVH21
<------------
AtMYB77
>>>>>>>>>
MYB1
>>>>>>>>>
MYB2
------>
ZmHOX2a(1)
--------->
ARR14(2)
--------->
AHL20(2)
<---------
ARR14(2)
<---------
AHL20(2)
>>>>>>>>>
CBP60g
<---
<---------
GLK1(1)
--------->
AHL20(1)
--------->
HSFB2a(2)
<------
<---------
YAB1
<---------
AHL20(1)
<---------
HSFB2a(2)
--------->
YAB1
------
GT1
--------->
YAB1
--------->
MYB52(1)
<-------
TEIL
<---------
ICU4
-----
GT1
<---------
ZAT14
<---------
MYB59
>>>>>>>>>
SARD1
<---------
ZAT18
-------
cagttttgatttctgagtacaatgctaatttattcctaactgacactctggaaatttgggtccatatacacttctcatggttcacttaaacatgactatc
10638700
<-----------
GT1
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR11(3)
<---------
ARR14(2)
<---------
AGP1
--------->
ARR14(2)
<---------
ARR11(3)
<---------
CCA1(2)
<---------
ANAC58
----------->
ARR10
--------->
YAB1
<---------
YAB1
<---------
ANAC58
<---------
AHL20(2)
-------
DOF2
<---------
ICU4
<---------
ANAC58
<----------
DOF2
-----
---
ARR11(3)
--------->
YAB1
<---------
ANAC46
----------->
GT1
--------->
ZAT18
-->
ARR11(3)
--------->
ICU4
<---------
ANAC58
--------->
REM1(2)
--------->
ATHB12
---------->
DOF2
---
tttcattcatagacagaagaattatgaattgttttcttgatgctctatcgtgtagatcttaaccggtttattgatttttttttgtaaagcccaccaagat
10638800
--------->
ATHB12
<---------
YAB1
--------->
ICU4
<---------
ARR11(3)
------>
NtERF2
>>>>>>>>>
MYB2
---------->
DOF2
--------->
TOE1(2)
-------
>>>>>>>>>
MYB1
<-----------
TBP
--------->
TOE2(2)
<------
--------->
MYB52(1)
----------->
RAV1(1)
<---------
ICU4
--------->
ANAC46
<---------
MYB59
<------------
CBF
--------->
ZAT18
--------->
TOE1(3)
<---------
GLK1(1)
---->
CCA1(2)
----------->
GT1
--------->
PCF2
----------->
GT1
--------->
YAB1
*
TSS
--
------->
DOF2
<------
ZmHOX2a(1)
--------->
ARR14(2)
--------->
TOE1(2)
------->
TEIL
---------->
CDC5
aaaagagaaggcctaactgaggagataattgggccacatataggcccactaaagaaaaacctagaagcttaaataagtacctatgagaactctg
cgccat
10638900
<----------
DOF2
====================
------>
ZmHOX2a(2)
=====================
<------
ZmHOX2a(2)
<---------
RVE1(1)
<---------
ARR11(3)
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ARR11(3)
--------->
ARR14(3)
<---------
TOE1(3)
--------->
AGP1
<-----------
RAV1(2)
<---------
ARR14(3)
------>
ZmHOX2a(1)
<---------
At4g35610
----------->
ARR10
-
------>
NtERF2
<----------
DOF2
--------->
SPL7
=
--------->
At4g35610
<---------
DAG2
<---------
ANAC55(2)
----
<---------
At4g35610
<----------
DOF2
--------->
ANAC46
--------
-->
DEAR3(1)
------>
ZmHOX2a(1)
------>
NtERF2
--------->
ANAC55(2)
--------
---
ALFIN1
<---------
ALFIN1
<---------
ATERF1(1)
<---------
MYB46(3)
--------->
LBD16
--------
---->
ZmHOX2a(1)
---------->
DOF2
--------->
At4g35610
<---------
GLK1(1)
<---------
cctcttctgcctcctccttcactcttcatcttcaaagactgcgccttttagctcag
gtttgttcttcgatttctcccgtaagatcttttgttcttacgcc
10639000
<------
MYB46(1)
<------
MYB83
--------
<---------
TOE2(3)
<-------
--------->
MYB59
<------
ZmHOX2a(1)
======
HOX2a_HOX2a
--------->
ATHB12
======
HOX2a_HOX2a
<---------
ICU4
----->
ZmHOX2a(1)
--------->
ATHB12
<---------
YAB1
========================
HOX2a_HOX2a
<---------
AHL20(2)
<---------
ATHB12
-->
NtERF2
--------->
YAB1
--------->
ICU4
->
ANAC58
--------->
YAB1
--------------->
AGL15
->
ANAC58
---------->
DOF2
<---------
YAB1
------>
ZmHOX2a(2)
-
->
ANAC46
------>
ZmHOX2a(2)
--------->
ICU4
<---------
GLK1(1)
===================
HOX2a_HOX2a
--
GT1
--------->
MYB52(2)
--------->
YAB1
<---------
WOX13(1)
<---------
ARR14(2)
--------->
MYB59
tcctattaggtttgtttcgatctcaaagtagccatggtcataatagtatttgattggaaattcgaagtttgagtattttgatccccatgattaggaactc
10639100
------>
ZmHOX2a(2)
<---------
At4g35610
<---------
At4g35610
--------->
YAB1
--------->
At4g35610
<---------
YAB1
<---------
ANAC58
->
GLK1(1)
<---------
ANAC58
---------->
DOF2
---------
--
GLK1(1)
<---------
ANAC58
<----------
DOF2
<---------
ANAC46
-------->
ANAC55(2)
<----------
DOF2
--------->
At4g35610
<---------
ANAC58
<------
ttaagtgatgtcttagtgaatcaattttcgatgttgttctttgcttctaattgtgatctgtcttttagcaaaataaagtttcgtttttgctgaatcgttg
10639200
------>
ZmHOX2a(2)
<---------
LBD16
--------->
ARR11(3)
<---------
ZAT2
<---------
ARR11(3)
--------->
ZAT2
--------->
TOE1(3)
------>
ZmHOX2a(2)
<-------
TEIL
--------->
At4g35610
<---------
MYB46(3)
<----------
DOF2
<---------
HSFB2a(1)
<---------
At4g35610
<-------
>
ATHB12
<---------
At4g35610
--------->
DAG2
<------
NtERF2
--------->
ZAT6
---
MYB52(1)
<---------
AGP1
<---------
DAG2
---------->
DOF2
--------->
HSFB2a(2)
--------->
TOE2(3)
gggttttagtagttgatctgatcttgtctgctttttatatcag
tgaaaaaggttcgagcttcggaaact
atggcagcattccctaaccttaactctgatg
10639300
<--------
P
<---------------
AGL15
<----------
DOF2
----------------->
AGL1
---------->
ID1
<---------
TOE1(2)
<---------
AHL20(2)
------------>
AtMYB77
--------->
TOE2(3)
--
At4g35610
<-----------
ARR10
<-------
TEIL
<---------
ARR11(3)
--------->
ALFIN1
ctggattgaagaagctcgacgagcatcttctcactcgcagttacattactgg
gtaagtttcaatttcttaaatttgtcttttttttcaagtgttgtctca
10639400
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AGI:
At1g30230.1
Description:
elongation factor 1-beta / EF-1-beta. Identical to Elongation factor 1-delta 1 [Arabidopsis Thaliana] (GB:P48006;GB:Q0WWW7); similar to elongation factor 1-beta, putative / EF-1-beta, putative [Arabidopsis thaliana] (TAIR:AT2G18110.1); similar to putative elongation factor 1-beta [Brassica rapa] (GB:ABK78691.1); contains InterPro domain Translation elongation factor EF1B, beta/delta chains, conserved site; (InterPro:IPR001326); contains InterPro domain Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange; (InterPro:IPR014038); contains InterPro domain Translation elongation factor EF1B/ribosomal protein S6
Range:
from: 10638895
to: 10640766
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.