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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                                   -
                                                                                                   -
                                                                                                   -
                                                                                                   -
                                                                 ====================HOX2a_HOX2a   -
                                                                 ===================================
                                                                 ===========================HOX2a_HOX2a
                               <---------ZAT18                   <------ZmHOX2a(2)                 -
       <-----------RAV1(2)     --------->ZAT18                  --------->ARR14(2)                 -
    --------->YAB1         <------NtERF2                        <---------ARR14(2)               <--
------->ZAT6            ------>NtERF2                           --------->AGP1             ------->GAMYB
-->NtERF2             <---------RAP2.6(2)             ----------------->AGL3               ---------
-->At4g35610         --------->At4g35610              ----------------->AGL2  ------>ZmHOX2a(1)-----
---->RAV1(2)      ---------->DOF2       ================================HOX2a_HOX2a       --------->MYB46(3)
---At4g35610  --------->WRKY18(1)       ------>ZmHOX2a(1)       --------->ARR11(3)   ------>ZmHOX2a(1)
 
gccactagcatcagatggtcaagaagcggccgagtaccctctccttcccaaaaactctccaaaaacagatccagcattgtcctccctccttcaacctcct  10087700
      <----------DOF2
-------->ANAC58
-------->ANAC58
-------->bZIP60(2)
-------->ANAC46                                                                        <---------GLK1(2)
-------->O2                                                                            <---------ARR11(3)
==HOX2a_HOX2a                        ---------->ID1            <------ZmHOX2a(1)       <---------ARR14(2)
-------->ANAC55(1)         <-----------GT1                  --------->HSFB2a(2)        --------->ARR14(2)
-------->ANAC55(2)      --------->YAB1                      <---------HSFB2a(2) --------->ETT(2)
-------ALFIN1  <---------ICU4      <-----------RAV1(1)<---------ANAC58    <---------STY1(2)
>AtMYB61       --------->ATHB12 <---------MYB52(1)    <---------ANAC58    --------->STY1(2)
->ZmHOX2a(1)  <---------YAB1<---------At5g28300     ------>NtERF2 --------->DEAR3(1)  <------ZmHOX2a(1)
 
ccacgtaagctttgttcaccattgctataatcaccgttttgttgtttcccattgctgccttgtctaggaccgcctctagctcgtccacaggatactctgt  10087800
                                                                                                   -
                                                                                                  ==
                                                                                                  --
                                      <-----------GT1           --------->DAG2                  <---
                         <---------ARR11(3)                    ---------->DOF2                  ----
                         --------->ARR11(3)                 --------->YAB1                      <---
                     --------->AHL20(2)                    <---------YAB1                  <--------
                     <---------AHL20(2)               --------->GLK1(2)                  <---------ZAT14
            --------->ANAC46    ------>ZmHOX2a(1)    <---------GLK1(2)                   --------->ZAT14
          --------->ZAT6 <-----------ARR10         <---------YAB1----------->GT1        <---------ANAC46
 
ccatctctatttaacacaaaacatttaaaatcttcctatatttactctcaaattccgattctattataaagtaacttacagtttcgacattgtgtagtag  10087900
                                                     ---------->DOF2
                                                   <------NtERF2
                                                   --------->LBD16
                                                  --------->ANAC58
                                                  --------->ANAC58
                                                  --------->ANAC46
                                                 <---------LBD16
                                                <------NtERF2
                                                --------->ATERF1(1)
         <------ZmHOX2a(2)                     ------>NtERF2
   --------->TOE1(2)                           --------->PCF2              --------->LBD16
---------->HVH21                               <---------RAP2.3(1)        --------->DEAR3(1)
==============HOX2a_HOX2a                      <---------ATERF1(1)       <------NtERF2
---->ZmHOX2a(2)                               --------->DEAR3(1)        ------>NtERF2
------AGP1            <---------WOX13(1)   --------->ANAC46            <---------ALFIN1   <------ZmHOX2a(1)
----->ARR14(2)    --------->At5g28300      --------->DAG2          --------->MYB46(3)  <------NtERF2
------ARR14(2)   --------->TOE2(3)        ---------->DOF2        --------->MYB52(1)   --------->LBD16
-ANAC46<------ZmHOX2a(1)          ----------->GT1--------->RAP2.3(3)------->GAMYB   <---------LBD16
 
atcggacataggatcagaaaccgtaattgatgagaaatagaaatataaggcgcccgcaaagagaagagcaacggccaccgcgagattgccggaggagttg  10088000
                                                                                          --------->ARR14(2)
                                         <-----------GT1                    --------->TOE2(3)
                                     <---------DAG2           --------->ANAC58        <-------------
                                     <----------DOF2          --------->ANAC58        <---------LBD16
                                 <---------ZAT18        *TSS  --------->ANAC46 <-----------TBP
                             --------------->AtSPL8 <---------MYB52(1)   <-----------GT1  <---------ARR14(2)
             <------ZmHOX2a(1)   --------->ZAT18   <-------GAMYB  ------------>CBF  <-----------GT1
      --------->ICU4       <---------AHL20(2)     <-----------RAV1(1)   <-----------GT1 --------->LBD16
 
aaggaaggcatgtttaggagactcacctattttatgtgcccttttctctctctctgttgattcgcacacaacaatttaacctatatataaccggatttgg  10088100
             --------->ANAC58
             --------->ANAC58            ----------->TGA1
       ------>MYB46(1)                   ----------->HVH21                         --------->YAB1
     <---------MYB111(2)             <---------YAB1                           --------->ANAC58
     <---------MYB46(2)     <---------TOE2(3)                                 --------->ANAC58
     --------->AtMYB61    <---------AHL20(2)                                  --------->ANAC46
    --------->ANAC46     --------->AHL20(1)         <---------TOE1(3)       --------->ANAC46
    --------->ANAC58     --------->AHL20(2)         <---------TOE2(3)<---------ANAC55(2)
    --------->ANAC58     <---------AHL20(2) <---------ANAC46         --------->ANAC46
  --------->ZAT6         <---------AHL20(1)<---------TOE2(3)         --------->ANAC55(1)          >>
----AG ------>MYB83 ------------>CBF<---------ARR11(3)               --------->ANAC55(2)  <---------
 
atgtaacaccaaactcaagtcatcccaatttaatgtgaatatcactgacgtttttaaggttccttctctaatacgttacacacgaagcatcatcttttgt  10088200
                                                                                               <----
                                                       --------->TOE2(2)                       <----
                                                       --------->TOE1(2)                      <-----
                                                      --------->YAB1                          <-----
                                                     <---------YAB1                           ------
                                                   --------->YAB1                       <---------YAB1
                                                <--------HAHB4                    --------->GLK1(2)
                                                <---------ICU4                    <---------ARR11(3)
                                --------->TOE2(3) <---------YAB1                  --------->ARR14(2)
                  <---------ARR14(2)            --------->YAB1                    <---------ARR14(2)
                  --------->ARR14(2)           --------->ICU4                    <---------GLK1(2)
>>>>>ZML2         ------->TEIL  <----------DOF2<---------YAB1              ---------->DOF2----------
-DOF2          --------->ANAC55(2)          --------->LBD16    --------->GLK1(2) <---------ARR14(1)<
 
tctagggtttttgtgtctacgtatttgtatttctactttaatgtctcccgattattatcatgcgatattctattttcccaaagagaatcttataaaagat  10088300
                                                                            ------>ZmHOX2a(2)
                                                                           <------ZmHOX2a(2)
          --------->ANAC55(2)                                   <-----------GT1
        <---------AHL20(2)                 <-----------GT1  <---------AHL20(2)
        <-----------GT1        --------->ANAC55(2)         <---------AHL20(1)        >>>>>>>>>GATA-1
-----CCA1(1)                   --------->ANAC58            <---------ARR11(3)<----------DOF2
-----RVE1(1)                   --------->ANAC55(1)        <---------CCA1(2)<---------RVE1(1)
----GLK1(2)                    --------->ANAC46  <---------ARR11(3)       --------->AGP1
----ARR11(3)                   <---------ANAC55(2)   <-----------GT1      <---------AGP1
--->ARR11(3)                   --------->ANAC58  --------->ARR14(2)       --------->ARR11(3)
>DOF2<---------ICU4            ----------->GT1   <---------ARR14(2)       <---------ARR11(3)
-----------GT1             --------->MYB52(1)   <---------CCA1(2)        <---------CCA1(2)
 
tttttcaatatttacttatttatctcagaataacaggtaacaaaattttccatatattcccatatatttgcctcttagatcttttatagataaacattca  10088400
                    <---------ZAT6                                                  <---------WRKY12
                  <---------ANAC46                                             ---------->DOF2
            ---------->ID1                                                   --------->AtLEC2
            <---------TOE2(3)                                           --------->ANAC58
          <---------ANAC46               --------->AHL20(2)             --------->ANAC58
    <---------TOE1(3)            --------->MYB46(3)                    --------->DAG2
    <---------TOE2(3)    <---------YAB1  <---------AHL20(2)           ---------->DOF2
 
gcaattcaaggttttgtggttttgtgttatgtttcaacaaatattaaaatttacagacaaatcacattcaccataaagccatgaaagtcaactaatagta  10088500
                                                                                 <---------AHL20(2)
                                                                                 --------->AHL20(2)
                    --------->ANAC58                                             <---------AHL20(1)
                    --------->ANAC58                                   ----------->RAV1(1)
                  ---------->DOF2                                   --------->ANAC58
               ----------->GT1                                     --------->MYB59
               <------MYB83                                        --------->MYB46(2)
               <------MYB46(1)                                   <---------MYB52(1)
              <---------MYB46(3)                  <-------TEIL   <<<<<<<<<MYB1   --------->AHL20(1)
            <---------At4g35610            ----------->GT1       <<<<<<<<<MYB2  --------->AHL20(2)
          <---------RAP2.6(2)          --------->ANAC58  <---------AHL20(2)--------->ANAC58
         --------->RAP2.6(3)           --------->ANAC58  --------->AHL20(2)--------->ANAC58
    --------->AHL20(2)               --------->CCA1(2)<---------ICU4--------->ANAC58   <---------YAB1
 
ctagacataaatttcggctggtaaagccaaacctatagagagacggaagtaaattcatatttatatcagttaggcaacaagaaataaattgtcaatggca  10088600
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AGI:  At1g28710.1   
Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28700.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64421.1); contains domain PTHR10483:SF6 (PTHR10483:SF6); contains domain PTHR10483 (PTHR10483)
Range:  from: 10086623    to: 10088057    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.