Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              ------>MYB83                         --------->MYB46(3)                         <---------MYB55(2)                                         <-----------GT1       --------->At4g35610  ------>MYB46(1)                                    <---------ANAC58       --------->ZAT2   --------->ANAC58                                  <---------ICU4       ----------->RAV1(2)------->GAMYB                                  <---------YAB1         <----       <---------ZAT2   --------->ANAC58                             ------>ZmHOX2a(2)  =============       <---------At4g35610--------->AtMYB61                          ==========================HOX2a_HOX2a ------->YAB1           -------->P                                 <---------ARR11(3)   ------>ZmHOX2a(1) ----->ANAC58          --------->WOX13(1)                      <---------ANAC58<---------ANAC46 <---- ----->ANAC58  <----------DOF2------->GAMYB                    <---------ANAC58<---------ANAC58------   agcatcatcagctgtctctttgaatcaaccaactcacttggactagaattagggctagagttgtttcttgatctcatcatggcgtttttcctgttgatcc  9899500                                                                                                 <---                                                                                                <----                                                                                              <------                                                               --------->MYB46(3)          <---------ANAC58                                                              -------->P                   <---------ANAC58                       --------->ANAC58                       ------>MYB46(1)              --------->ANAC55(2)                       --------->ANAC58                       ------>MYB83 <---------ARR14(2) -------                    <------ZmHOX2a(2)                         --------->MYB52(1)           <---------ANAC55(2)                   <---------ARR14(2)                        --------->MYB55(1)            --------->ANAC46           <---------SPL7     <---------ALFIN1              <---------MYB111(2)       <---------MYB52(1)        <-----------HVH21    --------->MYB46(3)             --------->MYB46(3)       --------->LBD16 -----ANAC58       --------->ARR14(2)                       <---------MYB111(1)    <---------LBD16--- =HOX2a_HOX2a    --------->LBD16                            <---------MYB46(2)<-----------GT1 ------- -----ANAC58    --------->ANAC46              <---------MYB52(2)           --------->ARR14(2)-------- >ZmHOX2a(2)   <---------LBD16--------->AtMYB61       <---------ICU4    <---------MYB59    <---------ANAC46   ttgccatcttcgtcatacgcggatcaagaaaaccacctctctcttgccacaaacaaggattaccaaccagagaaccgaattcacttccggtttgcgtaac  9899600                                                    <---------ATERF1(1)                                                    ------>NtERF2                                                   --------->DREB2C(2)                                                   --------->RRTF1(3)                                                   --------->ANAC46                                                   --------->RAP2.3(3)                                                   --------->RRTF1(2)                                                   --------->RAP2.3(2)                                                   --------->DEAR3(1)                                                   <---------ATERF1(2)                                                  --------->ERF1                                                  --------->ORA47(2)                                                  --------->DEAR4(2)        <------ZmHOX2a(1)                         --------->RAP2.3(1)      <---------TOE2(3)                           --------->RRTF1(1)   ------>ZmHOX2a(2)                              --------->ATERF1(1)  <---------At4g35610                             --------->RAP2.6(1)  <------ZmHOX2a(2)                              --------->ABI4(1)  --------->At4g35610                            ------>NtERF2  =============HOX2a_HOX2a                       <---------ATERF1(1) <---------AGP1                                 --------->ANAC46 <---------ARR11(3)                      <-------TEIL   --------->At4g35610 --------->ARR14(2)                    --------->ARR14(2)      <---------ALFIN1 <---------ARR14(2)                    <---------ARR14(2)  --------->At4g35610 ------LBD16                        <---------TOE2(3)<------NtERF2 -----LBD16                      <----------CDC5--------->DEAR3(1) --------->LBD16 ---ARR14(2)                    ----------->RAV1(2)--------->ATERF1(2) -->ARR14(2)                    --------->At4g35610--------->RAP2.6(2)             <------NtERF2 ------>LBD16          <---------ANAC55(2)--------->YAB1<---------At4g35610       --------->ANAC58 -->MYB52(1)        <---------MYB52(1)<------ZmHOX2a(1) ----------->RAV1(2) --------->MYB52(1)<------ --->HVH21   --------->ZAT6     --------->ZAT2 --------->MYB46(3)<---------LBD16  --------->ANAC58 <-   cgggatctgaggataacactccgataagtaaaccggctgaggattcatcaccgccgccatctgctccaccgggtatgaaaacggaggcaagaagtgatga  9899700                --------->YAB1               <---------YAB1              <---------ARR11(3)         <---------ANAC58            --------->ICU4               <---------ANAC58    ------>ZmHOX2a(2)            <---------YAB1             --------->ALFIN1      <-------TEIL          --------->YAB1           --------->ZAT14          <------ZmHOX2a(2)         <---------YAB1            <---------ZAT14         <---------ARR14(2)           <---------ANAC58         --------->ICU4       <---------ZAT14              --------->ARR14(2)           <---------ANAC58 ---bZIP60(2)--------->YAB1   <-------GAMYB               <------ZmHOX2a(1)             <---------ANAC46 ---------CDC5--------->ARR11(3)<---------ANAC46 <---------MYB46(3)    --------->ARR11(3)   ggctgagcctgatgatgatcataagtagggactgttgtgaagtgcgagcgattgttgttaggatccatagagagttcttggacagagtttgcgttagaag  9899800                                                                 <---------ZAT14                                                               *TSS                                                           ------>ZmHOX2a(2)                                                          <------ZmHOX2a(2)                                                          --------->CCA1(2)                                                         --------->AGP1                             <                                                         <---------AGP1                            <-                             --------->LBD16             <---------ARR14(2)                  <-------                            --------->LBD16              --------->ARR11(3)                <---------MYB52(1)                           <---------LBD16               <---------ARR11(3)               <-------GAMYB                           <---------HSFB2a(2)           --------->ARR14(2)              <---------MYB46(3)     ----------->GT1       --------->HSFB2a(2)          --------->GLK1(1)                --------->MYB55(2) ---------->DOF2          <---------LBD16               <---------GLK1(1)      ---------->DOF2<------   agggaaagggtaagaagttatccatttttcccggagagagagagagagagagggagagagatctgagtgaagaaacaaaaaaaaagagaggtcgttgggg  9899900        <------ZmHOX2a(1)                                                    ----------->GT1  --------->ATHB12                                                           <---------MYB46(3) ---------WOX13(1)                                                        <---------At4g35610 -----------CBF                  --------->ARR11(3)                     <-----------RAV1(2)       <-- --MYB46(3)                     <---------At4g35610                =================RAV     <-------- ---ANAC46          <---------ZAT14              ---------->DOF2   <-----------RAV1(1)      ---------   agattgattaggagagagcgagtgaagaagagacagatgttggaaaaacacaaaagaaaacgagtcaaaatgttgcagatggttcaatgtttgcagctta  9900000                                                                                              <------                                                                                           <---------                                                                                          <------NtERF2                                                                                          --------->ATERF1(1)                                                                                         ------>NtERF2                                                                                        --------->bZIP60(1)        <-----------HVH21                                                               <---------PCF2       --------->ANAC46                                                                --------->RAP2.3(1)      --------->MYB46(3)                                                              <---------ATERF1(1)   --------->GLK1(1)                                                                 --------->ALFIN1   <---------GLK1(1)                                                               ==================  --------->ARR14(2)                                             --------->ZAT6    <-----------RAV1(1)  <---------ARR14(2)                 <---------YAB1--------->MYB59              --------->ARR14(2) -------LBD16                      --------->CCA1(2)            <-------TEIL    <---------ARR14(2)<-- -At4g35610    <---------ALFIN1   <---------ARR11(3)        <-------TEIL    ------->MYC3<---------bZIP60(1) >At4g35610   --------->MYB46(3)  --------->ARR11(3) <------ZmHOX2a(1)      <-------MYC3<---------ANAC46   tggggatacccatcgcaccactcagacaaggagagagatatgaatacagaggttaggacatatacatacactagtacatgtgtatatgtggcgccagatt  9900100                   <----------DOF2                  <---------ANAC58 ---GLK1(2)       <---------ANAC58                                                                 <- --RAV1(2)        <---------ANAC46                                                                 -- ==RAV   ------->TEIL                                  <----------DOF2                             <- -------YAB1<---------AHL20(2)                  --------->ATHB12                             <-------   gtgtttgaatgtatataatggcttttatggcacagaagaccacgagaaggtcattggctatatgtgttttttctcagagagagagagagaaggctcttta  9900200                                                                                              <------             <---------ANAC58                 <---------TOE2(3)                               -------             <---------ANAC46       <-----------GT1                                           -------             <---------ANAC58  --------->AHL20(1)                                             -------         --------->GLK1(1)     <---------AHL20(1)                                             <------ --------AHL20(2)             <---------CCA1(2)               --------->TOE1(3)               <------ ------->AHL20(2)          ------>ZmHOX2a(1)  <---------TOE1(3)                              <------- --------AHL20(1)         --------------->AGL15       <---------ARR11(1)                 --------->MYB52(1) ---DOF2 <---------GLK1(1)--------->TOE2(3)<---------MYB52(1) --------->TOE2(3)    ----------->GT1---   ttttattttggagttccttggctctcttccttatatattaactctgttaaggtccaaatctataccttaatatgcagttcaaacattgaaaaaacgaatc  9900300                                      --------->AHL20(2)                                      --------->AHL20(1)                                      <---------AHL20(1)                                      <---------AHL20(2)                                     --------->AHL20(2)                                     <---------AHL20(2)                                  --------->ATHB51     <----------DOF2              <---------ICU4  ------->TEIL                    <--------ATHB1 ---------->ID1                   <--------HAHB4 ---ARR11(1)                      -------->HAHB4 -->ARR14(2)                     --------->AHL20(2) >TEIL                           --------->ICU4            --------->YAB1 -->GLK1(2)                    --------->YAB1          --------------->AGL15 ---ARR14(2)               <-------TEIL       <---------ZAT6 -----ARR10   <---------ARR11(3) <---------YAB1       ----------------->AGL3 --ARR14(1)   --------->ARR11(3) <---------ATHB51     ----------------->AGL2 ------------>AtSPL8--------->YAB1--------->YAB1    --------->ANAC46 --------->YAB1           <------   tttgtacctttagaaagatttagcataaatgcataataattaaatttagagtaaacaccattaatagccattcatatttttgtataaactaaatttcttt  9900400  Previous    Next  AGI:  At1g28300.1    Description:  LEC2 (LEAFY COTYLEDON 2); transcription factor. similar to FUS3 (FUSCA 3), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G26790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49081.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) Range:  from: 9896854    to: 9899863    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.