Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     --------->AHL20(2)                                                                                   <---------AHL20(2)                                                                                   --------->YAB1                       <---------ARR11(3)                                         <---------YAB1              <----------DOF2                                                   --------->YAB1  <---------------AtSPL8                                                       <---------YAB1  --------------->AtSPL8  --------->ANAC46                                     <---------AHL20(2) <---------ANAC58      --------->ARR14(2)                                      --------->AHL20(2) <---------ANAC46      <---------ARR14(2)                              --------->ATHB12 <---------ANAC55(1)  ----------->TBP                                 <---------AHL20(2) <---------ANAC58 ------------>CBF                    <---------AHL20(2)<------------CBF          --- ----YAB1 <---------GLK1(2)                   ----------->GT1         <---------YAB1              <--   attacttgtacaaattctttaccaatatatgccatactgtgaatgtaatggtttattttaaaacagccaaatattattgatataattatatgtttaagta  8061400                                                                                         <-----------                                                                                         ------------                                                                                        -------------                                                                              <---------YAB1                                                                             <---------AHL20(2)                                                                             --------->AHL20(2)                                                                         <------ZmHOX2a(1)                                                                        <---------YAB1  <---------ANAC55(2)                                                                   --------->ATHB12     <------------                                                                   <---------AHL20(2)   <------------                                                                  <---------AHL20(2)    <------------                                                                  --------->AHL20(2)    <------------                                                               --------->AHL20(2)     <---------AHL20(2)                                                              --------->AHL20(2)      --------->AHL20(2)          --------->At4g35610                                 --------->AHL20(1)  --------->AHL20(2)          <---------At4g35610                <---------ARR14(2)<---------AHL20(2) <---------AHL20(2) ------>ARR11(3)                        ----------->GT1       <---------AHL20(2)  --------->AHL20(1) -------ARR11(3)----------->GT1 <---------GLK1(2)             <---------AHL20(1) --------->AHL20(2)   gattttaaacttagctcatggttaaaaatagacagaattttggagtaaatctgagtttacaaaatttatttattaggattaaaattaattacttaaattg  8061500 ----AGL15 --->AGL15                                                                         --------->ZAT6---- ---->AG <---------ANAC58       --------->CCA1(2)                                --------->MYB52(1) -----AGL2        ----------->GT1          --------->ARR14(2)             --------->TOE2(3) <-------- -----AGL3     <---------MYB46(3)    ------->TEIL                        --------->YAB1     --------- -----AGL1    <---------YAB1   --------->ARR14(2)                ----------->RAV1(1)----------->GT1 -----AG <---------ANAC58      <---------ARR14(2)    <---------YAB1--------->ZAT6-------->P ---------   gcaaacatttttcttggtgattgtaacatacaatatacgaatttgaattcgcattgtgattccaaaacaacactaacataaactaccagtaaaatttttt  8061600   <---------AHL20(2)                                                                          <-----  --------->AHL20(1)                                                                          <------  <---------AHL20(2)                                                                          -------  <---------AHL20(1)                                    <-----------GT1                   <---------YAB1  --------->AHL20(2)                               --------->AHL20(1)                     --------->ICU4 ----->AHL20(2)               ----------->GT1      --------->AHL20(2)                   --------->YAB1 -AHL20(2)          ----------->GT1                <---------AHL20(2)           <-----------RAV1(1) >AHL20(1)     <---------AHL20(2)            --------->At5g28300               ------->TEIL  <------- >AHL20(2)   --------->AHL20(2)             ----------->GT1           --------->ALFIN1 --------->ICU4   aaaataaaatttcatatatatatgcttaaaaaatgtaacaaaaatatggtaaattttttaaccatggtatgggtggagatgtatgtgggatgatgatggt  8061700                                                              ----------->GT1                                                        --------->At4g35610                                                        <---------At4g35610                                                   --------->ANAC46                                                   --------->O2                                                   --------->bZIP60(2)                           ---------->DOF2         <---------TGA1a                         <------NtERF2             --------->TGA1a                     <---------MYB46(3)            --------->ANAC55(1)                    <---------AtMYB61              --------->ANAC55(2)                    --------->ALFIN1               --------->ANAC58--------->ARR11(3)                    <---------DEAR3(1)        ----------->HVH21   --------->GLK1(1)           <------                 <---------TOE2(3) ----------->GT1 --------->ANAC58<---------ARR11(3)  <---------HSFB2a(1) --GAMYB        --------->DAG2    --------->ANAC58 <---------O2   <---------GLK1(1)    --------->HSFB2a(1) ---MYB46(3)   ==============================================bZIP_DOF--------->TOE1(3) --------->HSFC1(2) ---->GT1      ---------->DOF2    --------->ANAC58 <---------ANAC55(2)          --------->ALFIN1    < --YAB1   <---------ANAC46 ==================================bZIP_DOF--------->TOE2(3) <---------HSFC1(2)   tatatggtaatggcgcataaaggtggtggcaaaggcaaggaaatatcgatgacacgtaagcagacgggaaatcttaaaccgagtggagaagcctccaaat  8061800                                                                                                -----                                                                                               ------                                                                                               ------                                 *TSS                                                       ---------                                <---------GLK1(2)                                           <--------                              ------------>CBF                                              ---------                             --------->AtMYB61                                              <--------      <-----------GT1      ----------->RAV1(1)                                   ------>ZmHOX2a(2)---    <-----------GT1        ------>NtERF2                 <----------DOF2         ==================== ---CCA1(2)               --------->RAP2.6(2)    ------->TEIL        <---------MYB52(1)    --------->RVE1(1) ----------DOF2     ------>ZmHOX2a(1)       <---------ANAC46         --------->ARR14(2)    --------->CCA1(1)   ctcttttttctctctctctctcctaaggccaccacaatctcttcttctgtgtatgtattctttttttctccgatattcgtcgatctctcaaaaatatcct  8061900                                     ------->GAMYB                                    <------------MYB.PH3(2)                                    --------->MYB46(3)                                    <---------MYB55(2)                                    <---------MYB111(2)                                   ------>MYB46(1)                                   ------>MYB83                                  ----------->RAV1(1)                                 --------->AtMYB61                                 ------->GAMYB                                <---------ATHB12                                --------->MYB46(3)                                <---------MYB52(2)         ---------->DOF2        <---------MYB55(2) ->ZmHOX2a(1)                  ------>MYB83 --->TOE2(3)                   -------->P                                                     <------ --->TOE1(3)                   ------>MYB46(1)                                               <------- >ARR11(3)                     --------->ANAC58                       <----------DOF2    <---------ANAC58 -ARR14(2) --------->ANAC58    --------->ANAC58               <-----------HVH21          <---------ANAC58 >ARR14(2) --------->ANAC58  ------->GAMYB                   <----------DOF2        <----------DOF2 -ARR11(3)--------->DAG2    --------->MYB46(3)            <-----------GT1           <---------DAG2  < ------->DOF2               <---------MYB52(2) <------ZmHOX2a(1)   --------->ARR11(3)    <---------ANAC46 ==HOX2a_HOX2a        <---------ZAT6<---------MYB52(2)    <---------AHL20(2)       <---------DAG2  <-   caaagccaaaaaaaagcaagagtagagataaccaaccaacaaactcataggaagacatatttactttcaggtctttcttctactacctttttcgtggttt  8062000                                   --------->ATHB12                              --------->LBD16                      <---------CCA1(1)                      <---------RVE1(1)        <---------GLK1(2)    <---------HSFB2a(2)     <---------WOX13(1)      --------->HSFB2a(2)   --------->ATHB12  <---------ARR11(3) <--------P    <---------At4g35610 <--------HAHB4 <---------WOX13(1)  --------->ARR11(3) ----DOF2      --------->At4g35610<---------ATHB12             --------->ARR11(3) -----------------ANAC81    <---------LBD16            <---------AHL20(2) -------GAMYB<-----------RAV1(2) <---------ARR11(1)    --------->AHL20(2)  <-----------GT1 --------MYB46(3)  ----------->ARR10          <----------DOF2  <---------ARR11(3)   ttggttgattgattctcagatgagattttttcccgaatcatttgatgtcttttttttttaaataagttcttggtaaatcactgtttctactagcattttt  8062100                                                          <---------At4g35610                                                 --------->GLK1(2)                                                --------->ARR11(3)           ----------->ARR10                    <---------ARR11(3)                             <-----       <---------ZAT2                      <---------WOX13(1)                                  <-----       --------->ZAT2   --------->ATHB12 --------->ATHB12 --------->At4g35610                  ------       --------->At4g35610              <---------YAB1---------->ID1                           ------       <---------At4g35610  ----------->HVH21 <---------TOE2(3)                   <---------At4g35610   tgttttctcagcttagatttgttgtttgatttgacatcttatctgattgagattttgttcttctgaattgttgttacagggtttagctgtttgattcagc  8062200                    --------->ATHB12                   --------->ICU4                   <---------YAB1        --------->ZAT18                                      <---------ZAT14        --------->ZAT14                           xxxxxxxxxxxxxxx>smallRNA(fl3)  <---------ANAC46        <---------ZAT14                         --------->TOE1(2)               <------NtERF2       <---------ZAT6                         --------->GLK1(2)               --------->ATERF1(2)      <---------------AtSPL8                  <---------ARR14(2)    <---------WOX13(1)     --------->ZAT6     <---------ANAC46   ----------->GT1      <---------GLK1(2)    --------->ATHB12       <-----------GT1 ----At4g35610   <-------GAMYB           ---------->DOF2     --------->ZAT14  <---------ATERF1(2) ----ZAT2 --------->ZAT14              <---------AHL20(2) <---------ANAC46   <---------ANAC58 --->ZAT2 <---------ZAT14      ---------->DOF2--------->ARR14(2) <---------YAB1------>NtERF2       <- --->At4g35610  --------->ALFIN1   <------ZmHOX2a(1)    <---------ANAC46     <---------ANAC58   -----   ttcgatttagtgtacagtgtgttgattagtataaaaaggatttaaaagaatctgggagatgtgtatagtgattgttcttgctggcgaatgttaacactac  8062300  Previous    Next  AGI:  At1g22770.1    Description:  GI (GIGANTEA); binding. Identical to Protein GIGANTEA (GI) [Arabidopsis Thaliana] (GB:Q9SQI2;GB:O64381;GB:O80545;GB:Q9S7N0); similar to LATE BLOOMER 1 [Pisum sativum] (GB:ABP81863.1); similar to GIGANTEA [Arabidopsis lyrata subsp. petraea] (GB:ABP96481.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81809.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024) Range:  from: 8061833    to: 8067705    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.