Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                -------                                                                                           <---------ANAC55(2)                                                                                           <---------ANAC46                                                                                           <---------ANAC55(1)                                                                                           <---------ANAC58                                                        ------>ZmHOX2a(2)                  <---------ANAC58                                                      <---------ARR11(3)                   --------->ANAC55(2)  ----------->GT1                                     --------->ARR11(3)       --------->ANAC46 --------->DAG2                                       <-----------ARR10 ----------->GT1   <---------- --------->DOF2               <-----------GT1   <---------ALFIN1  ---------->DOF2    --------->AHL20(2)   taaaaagtaacaagtagtagcatcatccaatataacttcatctaaatgacacacatgatcttacctccaaaagatggtaacacatcatataatacgtgta  7029200                                                                <---------MYB52(1)                                                            <---------At5g28300                                                           <-----------GT1      <-----------RAV1(1)                                                       ------->TEIL         <---------YAB1                                                    <---------ANAC58  <---------ARR11(3)                                                    <---------ANAC58  <---------AHL20(1)                                                    --------->ANAC55(2)  <---------AHL20(2)                                                    <---------ANAC46  --------->AHL20(1)              <---------TOE2(3)                    ---------->ID1     --------->ARR11(3)--------->ANAC58 -->REM1(2)  --------->YAB1                    <----------DOF2----------->GT1  <---------YAB1       - -------------TaNAC69(2)         --------->GLK1(2) <---------TOE2(3) <---------AHL20(2) --------->ANAC58   aacgactatgtgttataatgttatctatccatgaaattctgagttctgactttgacgtatttaaccgttaaatattttcttattgttggcaggcaatagt  7029300                                                                                             --------                                                                                         --------->YAB1                            -------->HAHB4                                         ------>ZmHOX2a(2)                            --------->ATHB12                                      --------->CCA1(2)                            <---------ICU4                                        <------ZmHOX2a(2)                            --------->YAB1                                       --------->ARR14(2)                           <---------YAB1                                        <---------AGP1<-----                         <---------ICU4                                          <---------ARR14(2)                 <---------ANAC58   --------->CCA1(2)        --------->ANAC46    --------->AGP1------                 <---------ANAC58<---------YAB1            <-----------GT1       --------->ARR11(3)        --------->At4g35610--------->ICU4               <----------DOF2          <---------ARR11(3) -------->ANAC55(2)      --------->YAB1        <----------DOF2                 ----------->ARR10   ttacataatcagttgaatttcgttcgataatgattacgatatgaagagacttttccgacttttactccataacttatacataagatctgaatcataaggt  7029400                                                   --------->ATHB12                                                 <---------TOE1(2)                                                ------>ZmHOX2a(1)                                          <------MYB46(1)                                          <---------ATERF1(1)                                          <------MYB83                                         <---------DEAR3(1)                                        <--------P<---------YAB1                                    <                                       <---------ANAC58                                    <---------AHL20(2)                                       <-------GAMYB                                     <---------AHL20(2)     ---------->DOF2                   <---------ANAC58                  <---------YAB1<---------AHL20(2)    <---------AHL20(2)                <------MYB83<---------ATHB12 ---------->DOF2    --------->AHL20(1) ->DAG2                               <------MYB46(1)             <---------AHL20(2)  <---------AHL20(1) ----ARR11(3)                         <---------MYB46(3)      <---------AHL20(2)     <---------AHL20(2) --->ARR11(3)         <-------TEIL   --------->MYB59         --------->AHL20(2)    --------->AHL20(2)   ctatatataaagaatgtttcatggtacatattgaacaatttggttggctcctatgatttgctataaatttaaagtctcattgcatatatatattttttgg  7029500                                              --------->At4g35610                                              ------>NtERF2                                             --------->DEAR3(1)                                            --------->RAP2.3(1)                                            <------NtERF2                                           ------>NtERF2                                           <---------RAP2.3(1)                                           <---------ATERF1(1)                             --------->ATHB51                                          --------->ANAC46                                 <--------ATHB1                                          <---------DEAR3(1)                               <---------ICU4                                  --------->ANAC46                              ---------->ID1                              <----------TaMYB80                      --------->ANAC58    <---------ATHB12                              <---------GLK1(1)                       --------->ANAC58    <---------ATHB51                   <---------ARR11(3)     --------->DEAR3(1)     --------->ANAC58     ------------>CBF                   --------->ARR11(3)  --------->ANAC46          --------->ANAC58 <---------DAG2      --------->ANAC58        --------->CCA1(2)          --------->ATHB12      <-----------GT1      --------->ANAC58        --------->GLK1(1)         <-------TEIL---------->DOF2<----------DOF2<-- ---------YAB1<---------YAB1 ---------->TaMYB80     <---------At4g35610    <---------ARR14(2)     ---   ttattagtaagaaattacgaatatatacagggatatactaaacgacgccgcttcagcattcatttggaagcaaagcaaatttgaccttttcaataattcg  7029600                                                    <---------------AGL15                                                    ==============================================MADS_MADS                                                    --------------->AGL15                  <---------ANAC58                                                   ----------------->AGL3                  <---------ANAC58                                                   <-----------------AGL2                  <---------ANAC46                                           --------->At4g35610                    <---------------AGL15            --------->ZAT18                --------->ZAT2                         --------------->AGL15            --------->ZAT14                <---------At4g35610                   <-----------------AGL3            <---------ZAT18            <---------ALFIN1                     --------->ARR11(3)            <---------ZAT14    --------->AtMYB61   ================================================MADS_MADS -------ARR14(2)    ---------->ID1   <---------ALFIN1                       <---------ARR11(3) ------>ARR14(2)   *TSS------>ZmHOX2a(1)   <---------ZAT2                  <---------GLK1(2) <-------   tattcacataagagtgaacttcgtccttcttcaccatcgccactctgctccgttctacatttagaagagactgaccaaaatctcccattaatggcgttac  7029700                                    <---------CCA1(2)                                    <---------At4g35610                                  --------->REM1(1)                           <----------DOF2                   <---------HSFC1(1)                   --------->HSFB2a(2)                            --------->ZAT2   --------->YAB1  --------->HSFC1(1)               --------->ANAC46   <------NtERF2          -------  <------ZmHOX2a(2)<---------HSFB2a(2)     ------>ZmHOX2a(1)    <---------ALFIN1        ----------->HVH21 --MYB52(1)    <----------DOF2 --------->TOE2(3)  --------->ANAC46<---------ZAT2  <---------REM1(2) <   tccgatcaaaactccatctttctcgaaccctttccttcatctctcctcttctacccaaaaccttctccacctcggcaacttctctactcagtgaccatga  7029800                           <---------DEAR3(1)                           --------->DEAR3(1)                           --------->RRTF1(3)                           --------->RRTF1(2)                           --------->ATERF1(2)                           --------->DREB2C(2)                           --------->RAP2.3(3)                           --------->RAP2.6(2)                          --------->DEAR4(2)                          --------->ATERF1(1)                          --------->RRTF1(1)                          --------->RAP2.3(1)                        --------->DEAR3(1)                       <------------AtMYB77                     --------->MYB52(1)                     --------->ARR14(2)                     <---------ARR14(2)                  --------->AtMYB61                ----------->RAV1(1)                ------>NtERF2               <---------ALFIN1               --------->DEAR3(1)              --------->ATERF1(1)              --------->ERF1             --------->ABI4(1)             ------>NtERF2--------->RAP2.6(1)             <---------ATERF1(1)            <---------ATERF1(2)            --------->RRTF1(3)            --------->RRTF1(2)            --------->ATERF1(2)            --------->RAP2.6(2)            --------->DREB2C(2)            --------->RAP2.3(3)            --------->RAP2.3(2)            --------->ANAC58--------->ABI4(1)            --------->DEAR3(1) ------>NtERF2            --------->ANAC58<---------ATERF1(1)            --------->ANAC46------>NtERF2           --------->RAP2.3(1)--------->DEAR3(1)           --------->RRTF1(1)--------->DEAR4(2)           --------->ATERF1(1)--------->RAP2.3(3)           --------->ERF1 --------->ERF1           --------->RAP2.6(1)--------->RAP2.3(2)           --------->ORA47(2)<------NtERF2          --------->LBD16 --------->ORA47(2)          <---------ATERF1(1)--------->ORA47(2)          ------>NtERF2--------->MYB46(3)                              --------->ANAC46         --------->ANAC46<---------ATERF1(1)                           --------->ANAC58      ------->TEIL--------->YAB1                                       --------->ANAC58      --------->GLK1(2)--------->DEAR3(2)                        --------->SPL7      <---------ARR14(2)--------->ANAC46                       --------->LBD16                    <--      --------->ARR14(2)------->GAMYB      <-----------ARR10  --------->HSFB2a(2)               ----- xxxxxxxxxxxxxxxx>smallRNA(s)--------->RAP2.3(1)              <---------HSFB2a(2)    --------->DAG2<- -->AtLEC2--------->At4g35610--------->ATERF1(1)             <---------LBD16        ---------->DOF2-- ----------ID1<------NtERF2--------->RAP2.3(2)         <---------MYB52(1)     ----------->GT1 <------   aaacgacgaatccgccgccaccataaccgccgccgtctctgtcccaatctcacctctgttaactccggaagacacacaaaccgtagaaaagttccattca  7029900                                          ------>NtERF2                                         --------->bZIP60(1)                                         --------->ANAC46                                         --------->ANAC58                                         <---------bZIP60(1)                                         --------->ANAC58        --------->ZAT18                ------->GAMYB   ---------->DOF2                    --------->MYB46(3) <---------YAB1                     --------->MYB52(1) -------ATHB12                --------->ANAC46 ---->WOX13(1)                --------->ANAC58 --------ICU4                 --------->ANAC58 ------->YAB1               ---------->DOF2 ---ATHB12                 <---------REM1(2)                    --------->ZAT6        <---------GLK1(1)   atcatcaaagaccactatcgcaaaaaccctacaagccccaacgacgccatcttaaaccctagcttaactctccatgctctctccctcgatttctcccaaa  7030000                                                                    <---------GLK1(1)                                                                   <---------GLK1(2)                                                                --------->ANAC58                                                                <---------ANAC55(2)                                                                --------->ANAC55(2)                                                                --------->ANAC55(1)                                                              --------->DEAR3(1)                                    ----------->HVH21         <---------ALFIN1                                  <---------ANAC46          <------NtERF2                                  --------->ANAC55(2)       ------>NtERF2                                  <---------ANAC58         --------->ANAC46                                  <---------ANAC55(1)      --------->ANAC58                                  <---------ANAC58         --------->ANAC58                                  <---------ANAC55(2)     --------->ZAT18                                 <-------TEIL             --------->SPL7                              <---------At4g35610       <-----------HVH21                              --------->At4g35610       --------->ARR14(2)                            --------->SPL7              <---------ARR14(2)                     ------                          <---------SPL7           <------NtERF2--------->ANAC58               <-----                          <-----------HVH21      <---------RAP2.6(2)--------->GLK1(1)         <------          --------->O2   <---------ETT(2)       --------->ZAT18 --------->ANAC46           <---------  --------->HSFC1(2)     --------->ETT(2)       <---------LBD16------>NtERF2      ------>MYB83<------  <---------HSFC1(2)   <-----------HVH21       --------->ALFIN1<---------LBD16    ------>MYB46(1)   ttgaaacttcccaagtctctccctccgtcgtccgatgcgtgatagagaagtgcggcagtgtccgccacggaatccctcttcaccaatctctagctttctt  7030100  Previous    Next  AGI:  At1g20290.1    Description:  similar to metal ion binding [Arabidopsis thaliana] (TAIR:AT1G20240.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61991.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69118.1); contains domain UNCHARACTERIZED (PTHR13711:SF8); contains domain SWI/SNF-RELATED CHROMATIN BINDING PROTEIN (PTHR13711) Range:  from: 7025538    to: 7029688    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g20300.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G77360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61968.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77908.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 7029619    to: 7031525    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.