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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC58
<------
NtERF2
--------->
ANAC58
---------->
DOF2
------->
PIF5
<-------
GAMYB
<------
MYB46(1)
<---------
ICU4
<-------
PIF5
----------
<------
MYB83
---------->
DOF2
<---------
YAB1
<---------
LBD16
<---------
MYB46(3)
------
DOF2
--------->
ANAC46
<---------
YAB1
<---------
ALFIN1
--------->
ANAC55(2)
-->
HVH21
--------->
MYB59
--------->
ICU4
--------->
PCF2
<---------
ANAC55(2)
<----
ttgctatcgatttggtatgcgcaagaaaagaagtcattcttacaattgaaagtctagagacccacgggcatcgtttatcacttattccaaagatggttat
6719000
--------->
ATHB12
<---------
YAB1
<---------
AHL20(2)
--------->
YAB1
<--------
<---------
WOX13(1)
------->
TEIL
--------->
YAB1
<---------
AHL20(2)
<----------
DOF2
<---------
AtLEC2
<------
MYB83
<-----------
GT1
<---------
ANAC58
<---------
ANAC58
<---------
YAB1
--------->
ATHB12
<---------
AHL20(2)
<---------
ANAC58
<---------
ANAC58
------>
ZmHOX2a(1)
<---------
AHL20(2)
--------->
ICU4
->
GT1
--------->
ZAT18
===============
HOX2a_HOX2a
--------->
AHL20(2)
<---------
AHL20(1)
-----
YAB1
<---------
ZAT14
------>
ZmHOX2a(2)
--------->
AHL20(2)
<------
MYB46(1)
--------->
AHL20(2)
gtttacttgttctctatgtggactgcttgatgatcggtttccttatgcatgtattaaatgtattaaatgtttggtttcataatatttaacttataaattt
6719100
<---------
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
============================================
<---------------
AGL15
--------->
AHL20(2)
<---------
AHL20(1)
<---------
AHL20(2)
<-----------
GT1
<---------
AHL20(1)
<--------
<---------
ANAC46
--------->
AHL20(2)
--------->
ANAC58
<---------
ANAC58
--------->
AHL20(1)
--------->
ANAC58
<---------
ANAC58
<---------
AHL20(2)
--------->
SPL7
<----------
DOF2
<---------
AHL20(2)
<---------
ANAC58
--------->
TOE1(2)
--------->
AHL20(2)
<---------
MYB52(1)
<---------
YAB1
<---------
ANAC58
xxxxxxxxxxxxxxxx>
smallRNA(s)
<---------
AHL20(2)
<---------
AHL20(2)
--------------->
AtSPL8
-
AHL20(2)
------>
ZmHOX2a(1)
<-----------
GT1
--------->
AHL20(2)
<---------
AHL20(1)
--------->
ZAT18
gtatacctgctatctcctctttcgtttaaatttaaactttcttcgttattaaatattttatttttatagtatattttagaatgttgagtaccccatttct
6719200
--------->
ATHB12
--------->
AHL20(1)
<---------
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(1)
<---------
ICU4
--------->
ARR11(3)
----------->
GT1
<---------
AHL20(2)
<---------
AHL20(2)
<<<<<<<<<
EIN3
<---------
YAB1
--------------->
AGL15
--------->
AHL20(1)
============================================================
MADS_MADS
<---------
ARR11(3)
--------->
ZAT14
--------->
YAB1
--------->
DAG2
---
--------->
AHL20(2)
<---------
ZAT14
<-----------
GT1
<---------
AHL20(2)
----------->
GT1
<-----
========================================
MADS_MADS
--------->
AHL20(2)
---------->
DOF2
<-----
-
CCA1(2)
<---------
ANAC46
--------------->
AGL15
--------->
AHL20(2)
<----------
DOF2
--------
caaaatatattatgggtatttctactgcaatgtatagaaattttcatcatttaaatttattgaaaaggtttctttgaaaggaaggaaaatcgaatttata
6719300
--------->
ANAC46
--------->
ANAC58
--------->
WOX13(1)
<---------
MYB52(1)
--------->
YAB1
--------->
ANAC46
--------->
At5g28300
--------->
WOX13(1)
--------->
ANAC58
<---------
RAP2.6(3)
<---------
PCF2
--------->
ANAC58
--------->
RAP2.6(2)
<---------
TCP16(1)
--------->
AtLEC2
<-
------>
NtERF2
<---------
ARR14(2)
<-----------
RAV1(2)
--
<---------
ATERF1(2)
--------->
ARR14(2)
<-------
TEIL
<-
--------->
ATERF1(2)
--------->
LBD16
------>
ZmHOX2a(2)
--
<---------
ANAC58
<---------
ANAC58
<---------
MYB59
---
------>
ICU4
<---------
ANAC58
<---------
ANAC58
<------
ZmHOX2a(2)
---
----
AHL20(2)
--------->
At4g35610
<---------
LBD16
--------->
ANAC58
--------->
MYB59
---
----
YAB1
<---------
At4g35610
<-----------
RAV1(1)
--------->
ARR11(3)
-----
->
YAB1
<-----------
RAV1(1)
<<<<<<<<<
TAC1
<-------
TEIL
<---------
ARR11(3)
<---------
TOE1(2)
atttttaaaaaccttgtgctggccgtaactcaaacactgtctctgcgggtccatcatcaagcaagggatctaattcggttcaggcaaatcacatgttcac
6719400
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
GLK1(1)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
ARR14(2)
--------->
ARR14(2)
<---------
ARR14(3)
--------->
REM1(1)
<---------
AGP1
<-----------
HVH21
------->
PIF5
----------->
GT1
<-------
PIF5
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
At4g35610
---------->
DOF2
--------->
ZAT2
--------->
MYB52(1)
<---------
ZAT2
------>
MYB83
--------->
At4g35610
------>
MYB46(1)
----------->
RAV1(2)
--------
MYB46(2)
------->
TEIL
------->
MYB46(3)
<---------
ALFIN1
--------
MYB111(1)
<---------
MYB52(1)
--------->
ANAC58
<---
------->
AtMYB61
--------->
LBD16
<---------
At4g35610
--------->
ARR14(3)
----
------>
ANAC58
--------->
LBD16
--------->
ZAT2
<-----------
ARR10
------
------>
ANAC58
<---------
LBD16
--------->
ANAC58
<---------
At4g35610
-------
------>
ANAC46
<---------
LBD16
*
TSS
--------->
ANAC58
<---------
CCA1(2)
--------->
ZAT18
<
---->
ANAC46
<---------
At4g35610
<---------
ICU4
--------->
ANAC58
<---------
ZAT18
---
accaaacagcgttacatctcccggtttttgttttcaac
atgacaactcaagctcccctcgcacctgcagatctcgttgggattagtggtctaaacgatga
6719500
<---------
ANAC58
------->
GAMYB
<---------
ANAC58
--------->
At4g35610
<-------
MYC3
<---------
WRKY38(1)
------
YAB1
<-------
MYC2
>>>>>>>>>>
WRKY63
--------->
ATHB12
----->
ICU4
--------->
REM1(1)
--------->
ANAC58
<--------
P
<------
ZmHOX2a(2)
--->
YAB1
<-----------
GT1
--------->
ANAC58
<---------
MYB52(1)
<---------
YAB1
-->
ICU4
----------->
GT1
<---------
ZAT18
----------->
RAV1(1)
<----------
DOF2
---------
WOX13(1)
------->
MYC2
--------->
ANAC58
--------->
LBD16
--------->
YAB1
------>
ATHB12
------->
MYC3
--------->
ANAC58
<---------
LBD16
--------->
ATHB12
tgattggaaattgttacaacacatgcttgcagagcgcaagaacaagtcaacagaacgtctctccggtaagtttttctttgaatcatggatcattgataca
6719600
<-------
TEIL
<---------
ANAC58
<---------
DEAR3(2)
<---------
bZIP60(2)
<---------
MYB46(3)
<-------
TEIL
<---------
ANAC58
<---------
DEAR3(1)
<---------
ZAT18
<---------
AtLEC2
--------->
LBD16
--------->
ZAT18
--------->
ANAC46
<---------
YAB1
<---------
SPL7
----------->
HVH21
<-------
TEIL
<---------
At4g35610
--------->
HSFB2a(2)
--------->
At4g35610
<---------
WOX13(1)
----------->
RAV1(2)
<---------
ANAC46
-
--------->
YAB1
<---------
AtLEC2
------>
NtERF2
<---------
HSFB2a(2)
------
<------
NtERF2
<---------
ANAC46
<---------
ANAC58
--------->
ANAC58
<---------
LBD16
------
<-----------
HVH21
<---------
ZAT14
<---------
ANAC58
--------->
ANAC58
--------->
MYB52(1)
-------
agcgcgtcgaatcatatgacgggtacacttgagtttttgcttgatatacatggcatggcacctgttttgataaaacttccggatggacggttcacaacct
6719700
<---------
ANAC58
--------->
At4g35610
-------->
ANAC46
<-----------
HVH21
->
GAMYB
<---------
ANAC58
--------->
ATHB12
<---------
At4g35610
--->
AtMYB61
<----------
DOF2
--------->
ATHB12
<--------
-->
MYB46(3)
<---------
YAB1
<---------
ARR11(3)
<----------
DOF2
--------->
YAB1
ccacaaaacatggtcgtgttttgatgggttcttcattaagtctccaagatgtgttctttgttgatgggcttcattgtcatctcatttcagtatcacaatt
6719800
--------->
At4g35610
<---------
At4g35610
--------->
ZAT2
--------->
ATERF1(1)
<---------
ZAT6
<------
NtERF2
----------->
HVH21
<-----------
RAV1(2)
--------->
MYB52(1)
<---------
ANAC46
--------->
At4g35610
<---------
WOX13(1)
<<<<<<<<<<<<<<<<<
LFY
<---------
At4g35610
--------->
ATHB12
<--------
-
YAB1
<---------
GLK1(1)
------->
GAMYB
<---------
YAB1
--------->
At4g35610
gactagagacagtggatatatgtttcagataactgacaaggtttgtgttattcaagaccgcatcacgaagacgctgattggcgcaggtgaacagcttaat
6719900
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AGI:
At1g19415.1
Description:
transposable element gene. copia-like retrotransposon family, has a 6.1e-43 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Range:
from: 6719439
to: 6720645
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.