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Chromosome 1
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Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
YAB1
-----
<---------
ICU4
<----
--------->
ICU4
<---------
ZAT2
<----------
DOF2
<---------
STY1(2)
------>
YAB1
--------------->
AGL15
-------
ICU4
<---------------
AGL15
------
ATHB12
--------->
YAB1
--------->
STY1(2)
----->
ICU4
<---------
YAB1
--------->
ANAC46
----------------->
AGL2
---->
CBF
<-----------
GT1
<---------
TOE2(3)
<---------
YAB1
--------->
ZAT2
tgatgtctttattactagttattctagtctctctactaccgtatttaagaattcttacaaacaatgttcttgattatagttttccattactagctggtct
6420700
<--
----
--------->
AtLEC2
------>
ZmHOX2a(2)
<----
<---------
GLK1(1)
<----
--------->
GLK1(1)
<-----
<------
ZmHOX2a(2)
------
<---------
ARR14(2)
<-----
--------->
ARR14(2)
------
--------->
ARR11(3)
<---------
ARR11(3)
------
<---------
ARR11(3)
<---------
ARR14(3)
<-----
--------->
ARR14(2)
--------->
ARR14(3)
<-----
<---------
ARR14(2)
--------->
ARR11(3)
------
<-----------
RAV1(1)
<------
ZmHOX2a(1)
--------->
YAB1
<---------
ANAC58
<------------------------
ANAC81
==================================
HOX2a_HOX2a
<-----
<---------
GLK1(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
ANAC58
---->
HSFB2a(2)
<----------
DOF2
<---------
AHL20(2)
--------->
AHL20(2)
<-------
TEIL
-----
HSFB2a(2)
<------------------------
ANAC81
===================================
HOX2a_HOX2a
<------
cgaattgtttccaaattctttttttttttgttggatttttaatttctgcaggattttggttttgatcatataataagatctcccatggatgcatgcagat
6420800
<----------
DOF2
---------->
DOF2
--------
DOF2
-->
ZmHOX2a(2)
-----
RVE1(1)
--
ZmHOX2a(2)
----
ARR14(3)
--->
ARR14(3)
------
ARR10
--->
ARR11(3)
---------
--->
AGP1
<---------
AHL20(2)
----
AGP1
<---------
YAB1
----
ARR14(2)
<---------
YAB1
--->
ARR14(2)
--------->
ICU4
----
ARR11(3)
<---------
AHL20(2)
<---------
YAB1
---
CCA1(2)
<---------
AHL20(2)
<----------
ID1
----------->
GT1
cttttcaaagcttttcatcttagtttatttttttttggtttagaaatagaacaagttaagttaagttaagttaagttgttaagttgttattattaaaagt
6420900
<---------
AHL20(2)
<-----------
GT1
<---------
AHL20(2)
<---------
DAG2
<------
<---------
YAB1
<-------
TEIL
<---------
ANAC58
<---------
AHL20(1)
<---------
AHL20(2)
----------->
GT1
<---------
ANAC58
--------->
AHL20(1)
--------->
AHL20(2)
--------->
DAG2
<---------
ARR14(2)
--------->
AHL20(2)
--------->
ATHB51
<---------
ZAT14
------->
TEIL
<----------
DOF2
----------->
GT1
-
->
DOF2
--------->
AHL20(2)
---------->
DOF2
--------->
ARR14(2)
--------->
YAB1
--------->
AHL20(2)
agaattatttttttttaatttagccaaaaactaaactgaaaagtacatatgaatatttgcttactttttttctattagaaaaattgaagtaaatatataa
6421000
<---------
YAB1
--------->
ANAC58
--------->
ANAC58
<---------
O2
<---------
ZAT2
--------->
ZAT2
<-----------
GT1
---------
----------->
GT1
<--------
P
<-------
TEIL
--------->
AHL20(2)
--------->
DAG2
--------->
O2
<-----------
GT1
<---------
AHL20(2)
---
AHL20(2)
------>
NtERF2
<---------
TOE2(3)
----------->
GT1
<--------
--------->
DOF2
----------->
RAV1(2)
<---------
KAN4(2)
----------->
GT1
---------->
DOF2
acaaaagtgaaaatgccacctggtaagtaagattaagaatatacattttactaaaaattaagaagttgttaaatgtaaaataaatatagcgaagaattct
6421100
<---------
ANAC46
<---------
ANAC58
<----------
DOF2
--------------------->
WRI1
<---------
DAG2
--------->
ZAT2
<---------
ARR14(2)
--------->
At4g35610
--------->
ARR14(2)
<---------
ZAT2
----------->
HVH21
>>>>>>>>>
TBF1
<------
ZmHOX2a(1)
<---------
At4g35610
>>>>>>>>>
TBF1
--------->
DAG2
>
GLK1(1)
<---------
ANAC58
<------
ZmHOX2a(1)
---------->
DOF2
-
GLK1(1)
*
TSS
<---------
ETT(1)
>>>>>>>>>
TBF1
<---------
WOX13(1)
<-----------
GT1
--------
ggtgagct
gaatttgtgtgttccgaccgaaaaatcaggaagaagaagaagaagattgacaaacaaaaaggattcacctttagtgactgagtgagagaaag
6421200
--
<-------
GAMYB
--
<---------
MYB46(3)
<------
--------->
LBD16
-------
<---------
ANAC46
-------
--------->
ARR14(2)
<---------
HSFB2a(2)
<----------
DOF2
<---------
ARR14(2)
--------->
HSFB2a(2)
--------->
DAG2
<------
ZmHOX2a(1)
--------->
TOE1(2)
--
----------->
GT1
--------->
ALFIN1
--------->
ANAC46
<---------
ANAC58
<-----------
RAV1(2)
-->
DOF2
---------->
DOF2
<------
ZmHOX2a(1)
<---------
ANAC58
<------
ZmHOX2a(1)
agattgaaggaaaaaaaaaaaaaagggtgaagctttggagagaggataaccacgtagaggattctaatccgtggttgcaaacgaaggacccagaa
gtgaa
6421300
--------->
WRKY38(1)
<---------
AHL20(1)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
TOE2(3)
<---------
ICU4
<---------
YAB1
--------->
WRKY45
--------->
ARR14(2)
--------->
ICU4
----------->
HVH21
<---------
ARR14(2)
<---------
ATHB12
------->
ANAC58
--------->
YAB1
--------->
WRKY12
<---------
HSFB2a(2)
------->
ANAC46
---------->
ID1
<----------
DOF2
--------->
HSFC1(1)
---
ZAT18
--------------------->
WRI1
--------->
HSFB2a(2)
-->
ZAT18
<----------
DOF2
<---------
AHL20(2)
<---------
LBD16
-->
ZAT14
<----------
DOF2
--------->
ATHB12
<----------
DOF2
<-------
------->
ANAC58
<---------
ARR11(3)
<--------
HAHB4
---------->
DOF2
--------->
GLK1(2)
cacgatactctccctcccttcccttgttcaatttctttctttgttctcatcattaaatttctttgacccaaagtttcaatctttttcag
tttctggaatc
6421400
<----------
DOF2
<---------
At4g35610
--------------------->
WRI1
------>
NtERF2
<---------
At5g28300
<---------
ANAC58
<---------
TOE2(3)
<----------
DOF2
<-----------
GT1
<---------
ANAC58
--------->
MYB52(1)
<---------
DAG2
<------
MYB83
----------->
GT1
--------->
At4g35610
--
GLK1(2)
<---------
ATHB12
--------->
LBD16
<------
MYB46(1)
--------->
MYB52(1)
<
tcttgcttcgatcgaatcactctc
atgtctaacgaagactctcttccgcctttcactttgtttggtttggatgatgtcgaaaattacggtctg
gtgagtt
6421500
--------->
ARR11(3)
<---------
ARR11(3)
<---------
TOE2(3)
<---------
AHL20(2)
--------->
ATHB12
>>>>>>>
ZML2
<---------
MYB46(3)
<---------
AHL20(2)
<-----------
GT1
------->
TEIL
<---------
YAB1
<---------
GLK1(2)
--------->
AHL20(2)
----------
DOF2
<---------
YAB1
<---------
AtLEC2
<---------
MYB52(1)
<---------
MYB52(1)
<---
ctctttggatttacttcgttttgatttgaagagtagcaatgcatgttctagtttccgattgttgatttagattttcgttagggtgatttatttgtctcag
6421600
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AGI:
At1g18660.1
Description:
zinc finger (C3HC4-type RING finger) family protein. similar to ATP-dependent protease La (LON) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G75460.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64510.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Peptidase S16, lon N-terminal; (InterPro:IPR003111); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)
Range:
from: 6421109
to: 6425872
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.