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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
--------->
ICU4
<--------
HAHB4
--------->
ATHB51
-------->
HAHB4
--------->
AHL20(2)
--------->
ICU4
<---------
YAB1
<---------
ATHB51
--------->
YAB1
----------->
GT1
<---------
YAB1
--------->
DAG2
--------->
HSFB2a(2)
--------->
YAB1
<-------
MYC3
---------->
DOF2
<---------
HSFC1(1)
--------->
At4g35610
------->
MYC3
<---------
ANAC46
<---------
HSFB2a(2)
<---------
At4g35610
<-------
TEIL
<---------
ANAC58
--------->
YAB1
--------->
DAG2
<---------
ICU4
<---------
ANAC58
<-------
TEIL
<---------
AHL20(2)
--------->
YAB1
------->
TEIL
--
ALFIN1
--------->
HSFC1(1)
---------->
DOF2
<--------
ATHB1
<---------
REM1(1)
------->
TEIL
ttgattcatattctagaagttgtccatatataaaaagctgaccataataattaatatacatgtgtacatgtagcttgtaaaaggttatacgaacgtagat
6177200
<---------
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(2)
--------->
ARR11(3)
<---------
ARR11(3)
<---------
ATHB12
--------->
AHL20(2)
------>
MYB46(1)
--------->
AHL20(2)
------>
MYB83
----------->
GT1
--------->
ANAC58
<------
MYB83
------>
NtERF2
<---------
At4g35610
<------
MYB46(1)
--------->
ANAC58
<------
NtERF2
--------->
MYB59
--------->
AHL20(1)
--------->
ANAC46
--------->
At4g35610
<--------
P
--------->
AHL20(2)
--------->
ANAC58
<---------
MYB46(3)
<---------
TOE2(3)
<--------
P
<---------
TOE1(3)
--------->
ANAC46
<---------
RAP2.6(2)
<---------
TOE1(3)
<---------
TOE2(3)
<---------
TOE2(3)
--------->
ANAC58
<---------
AtMYB61
<---------
AtMYB61
<---------
TOE1(3)
----------------------->
TaNAC69(2)
gaagtattggtggctgaagtagagggtttaggttggaaaaaaatatatttaagggtagacgttgaaagtttaacgaaaacaccccaccaagcaatctctt
6177300
<--
<---------
AHL20(2)
----
<---------
YAB1
<---
<--------
HAHB4
---------
<---------
ICU4
<--------
--------->
AHL20(2)
---------
--------->
YAB1
<----------
--------->
ATHB51
<---------
ICU4
<-----------
GT1
-------->
ATHB1
<---------
AHL20(2)
<---------
DAG2
<---------
ATHB51
<---------
AHL20(2)
<----------
DOF2
--------->
ICU4
------->
TEIL
---------
------>
ZmHOX2a(1)
<---------
YAB1
<---------
ATHB12
----------->
GT1
---------
----------->
RAV1(2)
<----------
DOF2
--------->
WOX13(1)
--------->
YAB1
--------->
ICU4
ccctcctgtgtaatctccttttttcttttcattactcatcaattactcaattattaaaactctcacataaaccaaaataatgtatataaaaattacgaaa
6177400
----------->
GT1
-------
AHL20(2)
----->
AHL20(2)
------
AHL20(2)
<---------
ANAC55(2)
--------->
LBD16
>
ANAC55(2)
<--------
P
<------
MYB83
----------->
GT1
-
ANAC55(2)
----------->
GT1
<------
MYB46(1)
<---------
DEAR3(1)
>
ANAC58
--------->
DAG2
<---------
MYB46(3)
<---------
LBD16
-
GT1
---------->
DOF2
--------->
MYB59
------->
GAMYB
>
ANAC46
--------->
AHL20(2)
--------->
ALFIN1
--------->
WOX13(1)
>
ANAC58
--------->
AHL20(2)
---------->
DOF2
<---------
HSFB2a(2)
--------->
MYB46(3)
<------
taaatggaaaaataaaaaagggtagattacttaaaaggagtgtgtttggttagggaagacgttggcatcaatcgccggtgaaaacctctctccaaacttt
6177500
<---------
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(1)
--------->
AHL20(2)
--------->
YAB1
<-----------
ARR10
--------->
GLK1(2)
>>>>>>>>>
RAP2.2
--------->
ARR14(2)
--------->
ARR11(3)
<---------
ARR14(2)
<---------
ARR11(3)
------->
TEIL
<-------
TEIL
--------->
AHL20(2)
<---------
AHL20(2)
<-----
<---------
ARR11(1)
<-----------
TBP
<---------
AHL20(2)
------->
TEIL
<----
<---------
ARR14(1)
<----------
DOF2
<---------
AHL20(2)
----------->
TBP
<-----
<---------
TOE2(3)
--------->
YAB1
--------->
AHL20(2)
--------->
AHL20(2)
<XXXXXX
<---------
ALFIN1
<---------
YAB1
------------>
CBF
--------->
CCA1(1)
----------->
TBP
<-----------
RAV1(1)
----
DOF2
--------->
MYB52(1)
<---------
ICU4
<----------
DOF2
--------->
AHL20(2)
<-------
TEIL
<-------
ccctcactctctaacgaatcttattatattcattactttcaattctttatataatatctaaataaatatacttatataaatacatgtatgtatggtgctg
6177600
--------->
STY1(1)
*
TSS
<---------
STY1(1)
<---------
At4g35610
--------->
TOE2(2)
<-------
--------->
At4g35610
--------->
TOE1(2)
--------
------
RAV1(1)
--------->
TOE2(3)
--------->
AHL20(2)
---
GAMYB
<----------
DOF2
--------->
REM1(1)
<---------
AHL20(2)
----
MYB46(3)
------>
MYB83
<---------
AHL20(2)
XXXXXXXXXXXXXX
MIR390A/B
------>
MYB46(1)
----------->
RAV1(1)
<
--
At4g35610
------>
ZmHOX2a(1)
<---------
ALFIN1
<-----------
GT1
--------->
AHL20(2)
ttgctcttc
agctttcttcttgttcctacatacccatcttccctcacctacatcaaacctagggtttcttaactatatcaacaacatatataaatttata
6177700
---------->
DOF2
<---------
AHL20(2)
<------
ZmHOX2a(2)
--------->
AHL20(2)
<---------
ARR11(3)
<----------
DOF2
---------->
DOF2
--------->
At4g35610
<---------
YAB1
--------->
YAB1
--------->
ZAT14
--------->
ARR14(2)
----------->
GT1
<------
ZmHOX2a(2)
--------->
ALFIN1
<---------
ARR14(2)
--
AHL20(2)
--------->
ARR11(3)
<---------
AHL20(2)
<---------------------
->
AHL20(2)
--------->
ATHB12
--------->
ARR11(3)
--------->
AHL20(2)
------>
NtERF2
<---------
At4g35610
---------
TOE2(3)
<---------
ARR11(3)
----------->
GT1
<---------
ANAC46
<---------
GLK1(1)
-----
tataggttgtgatttattgaagatcataaagatcaaaaggagagaggtattaaaaa
atgatgtgtagtcgaggccattggagacctgcagaagacgagaa
6177800
--------->
ANAC58
<---------
ICU4
--------->
ATHB51
------>
ZmHOX2a(2)
--------->
ATHB12
--------->
ARR14(2)
<---------
YAB1
<---------
AGP1
--------->
ICU4
<---------
ARR14(2)
--------->
YAB1
--------->
At4g35610
------>
ZmHOX2a(1)
<---------
At4g35610
<------
MYB46(1)
--------->
ANAC46
--------->
ARR11(3)
--
TaNAC69(2)
<------
MYB83
--------->
ANAC58
<---------
ARR11(3)
<----------
DOF2
---->
GLK1(2)
--------->
MYB59
--------->
SPL7
<---------
GLK1(2)
----------->
GT1
---------->
DOF2
gctaagagaactcgtcgaacaatttggtcctcataattggaacgccatagctcagaagctctctggtcgatctg
gtaaaactgactttatattaaagtca
6177900
--------->
AHL20(1)
<---------
AHL20(1)
--------->
AHL20(2)
<----------
DOF2
--------->
AHL20(2)
<---------
AGP1
--------->
AHL20(2)
<---------
ARR14(2)
<---------
AHL20(2)
--------->
ARR14(2)
<---------
AHL20(2)
<---------
ARR11(3)
--------->
ARR11(3)
--------->
ARR11(3)
<---------
ARR11(3)
<---------
CCA1(2)
<---------
AHL20(1)
<---------
WOX13(1)
--------->
AHL20(2)
<------
MYB83
------>
ZmHOX2a(2)
---------->
DOF2
--------->
AHL20(1)
<---------
MYB46(3)
<-
--------->
AHL20(2)
<---------
AHL20(2)
<-----------
RAV1(1)
<--------
P
<---------
AHL20(2)
----------->
GT1
<---------
AHL20(2)
--------->
ATHB12
<---------
TOE2(3)
--------->
TOE2(3)
<---------
TOE2(3)
<---------
AHL20(2)
<---------
YAB1
<---------
TOE1(3)
<----------
DOF2
<---------
AHL20(2)
--------->
AHL20(2)
<------
MYB46(1)
<-----------
RAV1(2)
tttctttaatttcttacaaagcatatataaactagggtttaatatatttatataaaaatatatatgttggtttgattggatcttttggtttcag
gtaaga
6178000
--------->
ANAC46
------->
GAMYB
<-----------
GT1
<---------
TOE1(2)
<---------
TOE2(2)
------>
ZmHOX2a(1)
--------->
TOE2(2)
--------->
TOE1(2)
------>
ZmHOX2a(2)
<------
=====================================
HOX2a_HOX2a
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
>>>>>>>>>
TBF1
<------
ZmHOX2a(2)
=============
HOX2a_HOX2a
--------->
ANAC46
---------
--------->
ARR14(2)
<-----------
HVH21
<---------
At4g35610
----------->
GT1
<---------
ARR14(2)
<----------
DOF2
>>>>>>>>>
TBF1
<---------
ANAC58
<XXXXXXXXXXXXXXXXXXXX
MIR170
<------
ZmHOX2a(1)
<---------
LBD16
<----------
DOF2
<--------
--------
REM1(1)
<---------
ATHB12
--------->
MYB52(1)
<------
ZmHOX2a(1)
<---------
ANAC58
gttgtagattgagatggtttaatcaattggatcctaggattaaccgaaaccctttcacggaggaagaagaagaaaggcttttagcgtctcatcggatcca
6178100
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AGI:
At1g17950.1
Description:
MYB52 (myb domain protein 52); DNA binding / transcription factor. similar to MYB54 (myb domain protein 54), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G73410.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68250.1); contains InterPro domain Myb transcription factor (InterPro:IPR015495); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778)
Range:
from: 6177610
to: 6179282
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.