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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
---
<---
<------
<------
-------
<------
=========
---------
<------
ZmHOX2a(2)
--------->
AGP1
<---------
ARR11(3)
--------->
ARR11(3)
<---------
ARR14(2)
===============
<---------
DOF5.7(2)
--------->
CCA1(2)
<---------
ANAC46
===============
<---------
ANAC58
<------
ZmHOX2a(2)
<---------
ANAC58
--------->
GLK1(2)
--------->
ARR14(2)
<---------
ARR11(3)
--------->
ZAT2
<---------
ARR14(2)
<---------
GLK1(2)
<---------
GLK1(2)
--------->
At4g35610
--------->
AGP1
<
--------->
ARR11(3)
--------->
ARR14(2)
<---------
ZAT2
--------->
ARR14(2)
---------->
DOF2
--------->
MYB52(1)
<---------
At4g35610
--------->
ARR11(3)
<--------
P
--------->
GLK1(2)
<---------
ARR14(2)
------->
GAMYB
--------->
GLK1(1)
ccatgagaagaattggtagataaagattcttcgtgtgttaacggattcgcgagtttcacaacgagctgagcgattccatgagactgagatccagatccag
5763700
--------->
ANAC58
<------
NtERF2
--------->
ANAC58
------>
NtERF2
<---------
PCF2
<---------
LBD16
--------->
ALFIN1
<------
NtERF2
<---------
ANAC46
------>
ALFIN1
<---------
ATERF1(1)
--------->
MYB52(1)
---
ZmHOX2a(1)
<---------
DEAR3(1)
<---------
DOF5.7(2)
-----
RAV1(2)
---------->
DOF2
---------->
CDC5
<---------
WRKY12
---
LBD16
<------
ZmHOX2a(1)
--------->
At4g35610
<---------
WRKY38(1)
-->
HSFB2a(2)
--------->
ANAC46
<---------
ZAT2
--------->
ARR14(2)
---
HSFB2a(2)
--------->
ANAC46
<---------
At4g35610
--------->
LBD16
======
HOX2a_HOX2a
<-----------
RAV1(2)
--------->
ZAT2
<---------
ARR14(2)
>
CCA1(2)
--------->
ANAC58
--------->
YAB1
------>
NtERF2
----------->
HVH21
======
HOX2a_HOX2a
------->
TEIL
--------->
DAG2
<----------
CDC5
--------->
GLK1(2)
===
HOX2a_HOX2a
--------->
ANAC58
<---------
ATHB12
<---------
ZAT18
<---------
ZAT14
---
------
ZmHOX2a(1)
----------->
RAV1(1)
--------->
WOX13(1)
--------->
ZAT18
--------->
ZAT14
<---------
GLK1(2)
gaggagggacccaataagacgcaccaggaacaaaagggagccaatcaggctgagctcggcgcacaaaaatccggtgaacggcgtcttctagcttctgtat
5763800
<------
ZmHOX2a(2)
------>
NtERF2
----------->
HVH21
--------->
LBD16
--------->
DEAR3(1)
--------->
ANAC46
--------->
HSFB2a(2)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
GLK1(1)
<-------
GAMYB
--------->
GLK1(1)
<------
NtERF2
<---------
AtMYB61
<---------
ARR14(2)
------>
NtERF2
<------
NtERF2
<---------
AGP1
<---------
DEAR3(1)
--------->
LBD16
--------->
ARR14(3)
--------->
SPL7
<------
NtERF2
--------->
AGP1
----------->
HVH21
<----------
CDC5
--------->
ARR11(3)
------>
ZmHOX2a(2)
--------->
At4g35610
--------->
ARR14(2)
=========================
--------->
DEAR3(2)
------>
NtERF2
--------->
TOE2(1)
--------->
ARR14(2)
<------
ZmHOX2a(2)
--------->
LBD16
--------->
TOE1(1)
<---------
ARR14(2)
--------->
ARR14(2)
<---------
LBD16
<---------------
AtSPL8
------>
ZmHOX2a(2)
--------->
ALFIN1
<---------
ARR14(2)
--------->
DEAR3(1)
<-----------
ARR10
------>
ZmHOX2a(2)
--------
<------
ZmHOX2a(1)
--------->
ATERF1(1)
<---------
ARR11(3)
<------
ZmHOX2a(2)
<-------
TEIL
------->
DOF2
<---------
MYB46(3)
--------->
WOX13(1)
<---------
HSFB2a(2)
==========================
taaaggatccgacggcgattgagaagccgcggaggtatcaatctcgtacagatctccccgacgatcggaagattgagatcggaatgaaacaaggtgcgac
5763900
--------->
ARR14(2)
<---------
ARR14(2)
--------->
MYB52(1)
<------
NtERF2
--------->
RAP2.3(1)
<---------
ORA47(2)
<---------
RAP2.3(1)
<---------
DEAR4(2)
<---------
ATERF1(1)
--------->
ATERF1(2)
<---------
RAP2.3(3)
<---------
RAP2.3(2)
<---------
DEAR3(1)
<---------
ANAC46
--------->
DEAR3(1)
------>
NtERF2
<------
NtERF2
-------
--------->
RAP2.3(1)
--------->
LBD16
--------->
ATERF1(1)
<-------------
<---------
ABI4(1)
<------
ZmHOX2a(2)
<---------
ATERF1(1)
--------->
ARR14(2)
<---------
DEAR4(2)
<---------
ARR14(2)
<---------
RAP2.3(1)
=================
<---------
DEAR3(1)
<------
ZmHOX2a(1)
<---------
LBD16
<---------
HSFB2a(1)
<---------
bZIP60(2)
--------->
HSFB2a(2)
<---------
O2
<---------
HSFC1(1)
----------->
HVH21
==========================
HOX2a_HOX2a
----------->
TGA1
<------
ZmHOX2a(2)
--------->
HSFB2a(1)
<------
ZmHOX2a(1)
<---------
ATERF1(2)
---------->
DOF2
<---------
HSFB2a(2)
===========
HOX2a_HOX2a
------>
NtERF2
--------->
DAG2
<---------
ARR11(3)
--------->
HSFC1(2)
--->
HVH21
<------
ZmHOX2a(1)
<----------
DOF2
--------->
ZAT18
--------->
ICU4
------>
ZmHOX2a(2)
===========
HOX2a_HOX2a
<---------
ERF1
---------->
DOF2
--------->
ARR11(3)
<---------
HSFC1(2)
gaagggaggagagaggatgacgcggcggcgaaacggcctttggatagagaaagtgaacgagagaaagatcgagccat
tatctagaaggatccgaagaaaa
5764000
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR14(2)
----------->
HVH21
--------->
DEAR3(1)
-------
--------->
At4g35610
<----------
DOF2
--------->
GLK1(2)
*
TSS
<---------
DAG2
<
--->
DOF2
<---------
ARR14(2)
--------->
ICU4
<---------
ANAC46
<---------
ALFIN1
-
----------
TaNAC69(2)
--------->
At5g28300
--------->
ALFIN1
<-----------
GT1
--
====================
HOX2a_HOX2a
----------->
GT1
<---------
ANAC46
<-----------
GT1
-------
gagaatcagcgacgagatcggtttctgtttcaacgctgtaattttgagttttggataatgctgtgt
gagacagagcttatttttcccacctttttatcgt
5764100
<----------
DOF2
<---------
DAG2
<-----------
GT1
<---------
AHL20(2)
<---------
AHL20(2)
--------->
ICU4
--------->
AHL20(2)
--------->
ARR11(3)
------>
NtERF2
<---------
ARR11(3)
--------->
RAP2.6(2)
<---------
AHL20(1)
--------->
DEAR3(1)
----------->
TBP
<---------
YAB1
------->
GAMYB
-->
YAB1
<---------
ANAC58
------>
MYB83
<---------
YAB1
--------->
DEAR3(2)
---------
AHL20(2)
<-----------
GT1
--------->
AHL20(2)
--------->
At4g35610
-------->
AHL20(2)
<---------
YAB1
--------->
AHL20(1)
<---------
At4g35610
------->
ICU4
----------->
GT1
--------->
YAB1
<-----------
GT1
<---------
MYB59
---->
GT1
<---------
ANAC58
------>
MYB46(1)
<---------
AHL20(2)
<---------
RAP2.6(3)
<----------
DOF2
aattttttgtttgcttattttgttattacctacaaaaatatttattattttaactttttcagccgacttaactaaattagctctgtcttttttagtacta
5764200
--------->
ATHB12
----------------->
AGL3
<---------
GLK1(2)
<---------
ARR14(2)
--------->
ANAC58
--------->
ARR14(2)
--------->
ANAC46
<---------
ANAC46
--------->
AHL20(2)
--------->
ANAC58
<---------
ANAC58
<---------
AHL20(2)
<---------
LBD16
------>
ZmHOX2a(1)
<---------------
AGL15
XXXXXXXXXXXXXXXXXXXX>
MIR867
<---------
STY1(1)
--------------->
AGL15
--------->
MYB46(3)
<-----------
GT1
<---------
CCA1(2)
<-----------------
AGL3
------->
TEIL
<---------
KAN4(2)
<------
ZmHOX2a(1)
<----------
DOF2
<---------
ANAC58
--------->
AHL20(2)
tcgaataaccacggattattaggaagtttactacccatggtttagacttttatatcctaggggcgtattcaatctaattttagaaaattaatatgaattt
5764300
----------->
GT1
---------->
DOF2
<-----------
GT1
<---------
ARR11(3)
<-----------
GT1
<---------
YAB1
----------------->
AGL1
<---------
ICU4
--------->
ZAT6
--------->
ARR11(3)
--------->
YAB1
tgtaagtgtaacacaatttgatgaatgaagataatttccaaagtagaaaaatgaataaaaatcacattttacatatatgtgtctgataactaattcaatc
5764400
-------->
ATHB1
--------->
ATHB51
--------->
ATHB12
--------->
YAB1
<---------
ICU4
<---------
YAB1
<---------
ATHB12
<---------
ANAC55(2)
<-----------
TGA1
----------->
GT1
<-----------
HVH21
--------->
DAG2
--------->
ANAC46
<--------
ATHB1
---------->
DOF2
--------->
DEAR3(1)
----------->
RAV1(1)
---------->
DOF2
<---------
At5g28300
<---------
ETT(1)
<---------
YAB1
<---------
WOX13(1)
--------->
YAB1
--------->
DEAR3(2)
--------->
GLK1(2)
------>
ZmHOX2a(2)
--------->
MYB46(3)
--------->
ICU4
<---------
At5g28300
---------->
DOF2
--------->
YAB1
<---------
YAB1
--------->
ANAC55(2)
ttttaccgacaaaagtgaaactcgaaagtatctatcttctaacatgatcgaaagtaatctaattgaatcaccgtcacatatcacaatcattggtttttta
5764500
<----------
DOF2
<-----------
GT1
<---------
CCA1(1)
----------->
GT1
<---------
AHL20(2)
<---------
RVE1(1)
--------->
KAN4(2)
<-
<---------
ICU4
<---------
ARR11(3)
<------
ZmHOX2a(2)
<-----
--------->
AHL20(2)
--------->
At4g35610
<---------
ARR11(3)
<-----
<---------
AHL20(2)
<---------
At4g35610
<------
ZmHOX2a(2)
<----------
DOF2
<------
<---------
ZAT6
<---------
DAG2
--------->
ARR11(3)
--------->
ARR11(3)
-------
agtcttagtgatataaatatttccagccttttctgctaaatagatattttggatcagaaatagatcattctctttttttttgtaaattcgaaaatagata
5764600
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AGI:
At1g16840.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78890.1); similar to hypothetical protein OsI_027317 [Oryza sativa (indica cultivar-group)] (GB:EAZ06085.1)
Range:
from: 5762687
to: 5764066
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.