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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                            <---------RVE1(1)
                            <---------CCA1(1)
                           --------->ARR14(2)
                           <---------ARR11(3)
                           --------->ARR11(3)                        ----------->GT1
                           <---------ARR14(2)                --------->WOX13(1)
                         ----------->ARR10                --------->ANAC46
                       <---------At4g35610                --------->ANAC58
                --------->YAB1                            --------->ANAC58                         -
                <---------ICU4<---------YAB1             ------->GAMYB                         -----
               <---------ATHB12                         --------->MYB46(3)                     <----
     --------->ANAC46  --------->At4g35610             -------->P <---------TOE2(3)            <----
 --------->AtMYB61<---------ANAC55(2)                 --------->WOX13(1)                       -----
-->YAB1      --------->WOX13(1)     ----------->GT1--------->TOE2(3)<------ZmHOX2a(1)         ------
 
acgaccacaagggactcaatcatgtgagcagatattatagggtaattgcaattacatcaaccagcaattaaggagaaaaacatacccattcaaactatta  2838000
                                                                                 ------>NtERF2
                                                                           <---------GLK1(1)
                                                                    ------>ZmHOX2a(2)
                                                                   <------ZmHOX2a(2)
                                                                   =============HOX2a_HOX2a
                                                                  --------->ARR14(2)
                                                                  <---------ARR11(3)        <-------
                                        ==================================HOX2a_HOX2a       <-------
                                        ===================================HOX2a_HOX2a  <-------GAMYB
                                      --------->LBD16             <---------ARR14(2)    <---------At4g35610
                                     --------->HSFB2a(2)          --------->ARR11(3)   --------->MYB52(2)
-------->YAB1                        <---------LBD16  <---------TOE1(3)    --------->At4g35610
---->AHL20(2)                        <---------HSFB2a(2)          --------->ARR14(3) <---------MYB52(1)
-----AHL20(2)                 -------->P<------ZmHOX2a(1)        --------->GLK1(1)  <-----------HVH21
-----AHL20(1)                <-----------GT1       <----------DOF2<---------ARR14(3)--------->LBD16
---->AHL20(1)        ---------->DOF2 <-----------RAV1(2)         <---------GLK1(1) <---------ANAC46
--->AHL20(2) ---------->TaMYB80----------------->AGL1<-----------RAV1(2) <------ZmHOX2a(1)  <-------
 
aattagaatataagggaatataagaaaagaaactaccattccaggagagaagcgcttcaggtttttggagatcttaggagatgcctccgtgagttgctgg  2838100
 <---------ARR11(1)
 <---------ARR11(3)
 <---------ARR14(2)                                                    --------->At4g35610  ========
 --------->ARR14(2)                                               <---------ZAT6            <-------
 --------->ARR11(3)                                           <---------ZAT14  <---------ARR11(3)
<---------CCA1(2)                                             --------->ZAT14--------->ANAC58     <<
--ANAC58                                                      --------->ZAT18--------->ANAC58<------
--ANAC58                                            <---------ANAC46   <---------At4g35610  ========
--ANAC46                          ------->TEIL      ----------->GT1<-----------HVH21     --------->GLK1(2)
 
tccatatctttggactcatcaggtttctcattcgatgtgcctagagggttttgaggcgttaaaactgcagtgtcagaggcaagaccattcacattctgtt  2838200
          --------->At4g35610
          <---------At4g35610
          --------->ZAT2
          <---------ZAT2                                                                        ----
          <---------ZAT14                                                                  <------MYB46(1)
        <---------WRKY38(1)                                                                <--------
        <-----------RAV1(2)                                                                ---------
        <---------WRKY12                                                                   ---------
 ----------->RAV1(2)                                                                       <--------
=============RAV      <---------YAB1             <---------YAB1                    --------->DAG2
----RAV1(1)         --------->CCA1(2)        --------->GLK1(1)                   ---------->DOF2----
<<<<<<<<WRKY26--------->ALFIN1               <---------GLK1(1)         --------->At4g35610 <------MYB83
-GAMYB<-----------HVH21                <---------WOX13(1)         --------->MYB46(3)  --------->ALFIN1
====================RAV              --------->ATHB12        <---------TOE1(2) ----------------->AGL1
 
gatcaactgggtcagcagtggaggtatgagagttggaagttgattgggagttctgaatatgtcgaaggaacaactgctggatgccaaaggtggaaggttg  2838300
    <---------ICU4
    --------->YAB1
    --------->ATHB12
   --------->ICU4
   <---------ATHB12
------->HVH21
-HSFC1(2)<---------At4g35610                                       --------->GLK1(1)
>HSFC1(2)--------->At4g35610                                    <------NtERF2
>HSFB2a(1)                          <---------At4g35610  <---------ANAC58
-HSFB2a(1)                          --------->At4g35610  <---------ANAC58                    -------
------->TGA1  <---------YAB1     ---------->DOF2      <----------DOF2                    ------>NtERF2
 
tgacgaatgattagctgaagattgtttgtttgatttcaaagctgaagacttgggcttctttcttggtggcatttccaatggctaatacttggcaccctga  2838400
                                                                                                  --
                                                                                                  <-
                    <---------ANAC46                                <------------CBF             <--
                    <---------ANAC58                               --------->ATHB12     <---------ARR14(2)
        <---------ZAT2           <----------DOF2                  <---------YAB1        --------->ARR14(2)
        <---------At4g35610   <---------AHL20(2)            <---------AHL20(2)          <---------GLK1(2)
 <---------YAB1     <---------ANAC58        <---------HSFC1(2)  --------->YAB1       <------------MYB.PH3(1)
-->LBD16--------->At4g35610   <-----------GT1       --------->HSFC1(2)             --------->MYB52(1)
 
aattttgatggagctgataaacttcgtgcatattaactttgccttgaaacttcgaaacttcatataatcttcattgtaattttgtataacggattcttat  2838500
                                                      ===================================HOX2a_HOX2a
                                                      <------ZmHOX2a(2)
                                                     <---------ARR11(3)
                                                     --------->ARR11(3)
                                                    <------ZmHOX2a(1)
                                            <----------DOF2
                                         --------->ARR11(3)
                                        --------->RVE1(1)
--------->TOE2(3)                       <-----------GT1
--------->YAB1             --------->YAB1<---------ARR11(3)                                 --------
------->ARR11(3)       ---------->DOF2  --------->CCA1(1)--------->ANAC46         ------>ZmHOX2a(1)-
--------ARR11(3)   <----------ID1----------->GT1  <---------TOE1(2)     --------->MYB46(3)  --------
-------CCA1(2)  ---------->DOF2---------->DOF2   <---------LBD16   --------->GLK1(2)---------->DOF2-
 
atatcttaatctgaaattcaaaagaacaaagcataaaagtaaaatacctttctcaggatcacgctgtgagaatcaacaacaagtcctgaaagtagttgac  2838600
                ----------->GT1
               <---------HSFB2a(2)
          <---------GLK1(1)
          --------->HSFB2a(1)
          --------->GLK1(1)
       --------->LBD16                                                --------->TOE2(3)
      --------->LBD16                                                 --------->HSFB2a(2)
      --------->ANAC46                                                <---------HSFB2a(2)
     --------->LBD16                                             --------->HSFB2a(1)
     <---------LBD16                                             <---------HSFC1(2)
    <---------LBD16                                              <---------HSFB2a(1)
 --------->GLK1(2)                         --------->HSFB2a(2)   --------->At4g35610
 --------->ARR14(2)                        <---------HSFB2a(2)   --------->HSFC1(2)
 <---------ARR14(2)                   --------->At4g35610  <---------At4g35610
--->HVH21--------->ARR14(2)           <---------At4g35610  --------->At4g35610
-------->HSFB2a(1)              --------->MYB52(1)         <---------ZAT2
->WRKY12 <---------ARR14(2)    <---------AHL20(2)          --------->ZAT2
-------->HSFC1(2)             --------->AHL20(2)         <-----------RAV1(2)   ------->TEIL
 
gaagaatccccggaaattccagtaaattccaaaattaatggagcttccacaaacctagactcagcagaagcttccataaacgaacttcgctacctctgaa  2838700
                                                                                                  <-
                                                                                                  --
                                                                                                 ---
                                                                                                 <--
                                                                                                 ---
                                                                                                <---
                                                                                                ----
                                                                                               <----
                                                                                               <----
                                                                                               -----
                                                                                              <-----
                                                                                              ------
                                                                 --------->ANAC46            -------
                                                              -------->P                     <------NtERF2
                                                             --------->MYB52(1)             ------>NtERF2
                                                  --------->GLK1(2)                         <-------
                                                 <---------ARR14(2)                --------->ANAC58-
                                                 --------->ARR14(2)                --------->ANAC58<
                                        --------->YAB1     <---------MYB52(2)    ---------->DOF2----
                                       ----------->GT1--------->LBD16 --------->ANAC58     ---------
                            --------->ANAC58     <---------GLK1(2)    --------->ANAC58     ---------
      ---------->DOF2       --------->ANAC58    --------->At4g35610   <---------DEAR3(1)   <--------
 
aatcgcagacaaagttgagaattcagaaggaacgaaatggaaatgaaaatcagattccgaaaactaaccaggcacggcgaagtagaaagcaatggcgacg  2838800
      <---------DEAR3(1)
     <------NtERF2
     --------->ATERF1(1)
    <---------ATERF1(1)
    ------>NtERF2
   ----------->HVH21
   --------->DEAR3(1)
   <---------DEAR3(1)
  --------->ATERF1(1)
  --------->RAP2.3(1)
  <------NtERF2
 <---------ATERF1(1)
 ------>NtERF2
 <---------RAP2.3(1)
--------->DEAR3(1)
<---------DEAR3(1)                                        --------->At4g35610
--------ATERF1(1)                                     --------->ARR14(2)
---->NtERF2                                           <---------ARR14(2)
-------->HVH21                                 <---------HSFC1(2)
-------DEAR3(1)                                --------->HSFC1(2)
------>DEAR3(1)                                --------->HSFB2a(1)                      --------->LBD16
---NtERF2                                     <---------TOE2(3)                         <------NtERF2
----->ATERF1(1)                               <---------TOE1(3)                        <---------ATERF1(1)
-----ATERF1(1)                                <---------------AtSPL3                  --------->DEAR3(1)
-----RAP2.3(1)                             <---------REM1(1)                        ------>NtERF2
->NtERF2                                   ----------->HVH21                        <---------ATERF1(1)
----DEAR3(1)                               --------->ALFIN1                        <---------ALFIN1
--->DEAR3(1)                             <---------At4g35610                       --------->ANAC46
-->ATERF1(1)                             --------->At4g35610                       --------->DEAR3(1)
--ATERF1(1)   --------->At5g28300        <---------ANAC46 ------>ZmHOX2a(1)      ------->GAMYB
-------->ATERF1(1) --------->ALFIN1   <---------MYB52(1)  <---------At4g35610  -------->P
------NtERF2<---------DEAR3(1)      <---------TGA1a--------->MYB59      --------->AHL20(2)
----->RAP2.3(1) <---------MYB46(3)  <---------ANAC58<---------DEAR3(2)  <---------AHL20(2)
>ETT(2)     <---------ANAC46        <---------ANAC58<------MYB83       <---------AHL20(1)
-->HVH21 ----------->TGA1           <---------O2  <-------TEIL         <---------AHL20(2)
-DEAR3(1)----------->HVH21          <---------ANAC46<------MYB46(1)    --------->AHL20(2)    <------
 
gcgacggcgacggtgacggtgagtgaggcagtgagagagtcgtgaggtgaaggttcggttcctctgaaaatcaatttaattcaaccccgcccgcgtcttt  2838900
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AGI:  At1g08840.1   
Description:  EMB2411 (EMBRYO DEFECTIVE 2411); ATP-dependent DNA helicase. similar to DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT2G03270.1); similar to hypothetical protein OsI_016565 [Oryza sativa (indica cultivar-group)] (GB:EAY95332.1); similar to hypothetical protein OsJ_015276 [Oryza sativa (japonica cultivar-group)] (GB:EAZ31793.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70429.1); contains InterPro domain DNA helicase, UvrD/REP type; (InterPro:IPR000212); contains InterPro domain DNA replication factor Dna2 (InterPro:IPR014808)
Range:  from: 2829582    to: 2838372    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.