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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
-
<--
<--
-----
--------->
ARR11(3)
--
========================
<---------
At4g35610
---------->
DOF2
---------->
DOF2
------>
ZmHOX2a(1)
<----------
DOF2
--------->
ZAT6
<----------
DOF2
--------
-------->
At4g35610
<------
ZmHOX2a(1)
==============================
-------->
ZAT2
--------->
At4g35610
<------
NtERF2
----------->
RAV1(1)
--------->
At4g35610
--------->
SPL7
---------
At4g35610
<-----------
RAV1(2)
--------->
MYB46(3)
--------->
ZAT2
<-----------
HVH21
------->
GLK1(2)
XXXXXXXXXXXXXXXXXXXX>
MIR390A/B
--------->
ZAT6
<---------
ARR11(3)
==
gaagctgagccctttgcagctctataagcttcaggaggcataacaccataaaccacagagacattaacaccagctttctcaaagacattcccgtcctgca
870800
<---------
ALFIN1
------>
NtERF2
--------->
DREB2C(2)
--------->
ANAC58
--------->
ANAC58
--------->
DEAR4(1)
--------->
RAP2.6(2)
--------->
ANAC58
<---------
ATERF1(1)
--------->
TGA1a
--------->
ERF1
=====================
MYC_MYB
--------->
ANAC58
<---------
ALFIN1
--------->
ANAC46
--------->
DEAR3(1)
-------->
ANAC46
<---------
ATERF1(1)
-------
ALFIN1
--------->
ANAC46
-------
MYB52(2)
--------->
ABI4(1)
<----------
DOF2
------>
RAV1(1)
--------->
DEAR3(1)
------>
MYB46(1)
----->
GAMYB
------->
GAMYB
------>
MYB83
===========
bZIP_DOF
--------->
AtMYB61
--------->
ARR11(3)
->
AtLEC2
--------->
MYB46(3)
--------->
AtMYB61
<------
ZmHOX2a(1)
<----
===========
bZIP_DOF
--------->
MYB46(3)
<---------
ARR11(3)
--------->
DEAR3(1)
<----
===========
MYC_MYB
------>
NtERF2
<---------
MYB59
--------->
TOE1(2)
<<<<<<<<<
TAC1
acacacgactgattccaccgccaccaccaggtcgagaccaaacatcttctttaaacttaggaccgccttctatagcttcaattgcatcacaaacactgtc
870900
--------->
GLK1(2)
<---------
ARR14(2)
--------->
ARR14(2)
<---------
GLK1(2)
--------->
YAB1
<---------
At4g35610
--------->
At4g35610
--------->
TGA2(2)
<-----------
TGA1
--------->
bZIP60(2)
--------->
TGA1a
<---------
bZIP60(1)
--------->
ANAC55(2)
<---------
bZIP60(2)
--------->
TGA2(1)
<---------
TGA1a
--------->
bZIP60(1)
<---------
TGA2(1)
>>>>>>>>>>
HY5
--------->
ANAC58
<---------
O2
--------->
O2
===============================
bZIP_DOF
===============================
bZIP_DOF
--------->
ANAC58
<---------
HSFB2a(2)
>>>>>>>>>
TBF1
<---------
ANAC46
<---------
YAB1
>>>>>>>>>
TBF1
<---------
ANAC55(2)
<---------
ATHB12
>>>>>>>>>
TBF1
----------->
STF1
--------->
DEAR3(1)
--------->
ANAC58
<-----------
STF1
<------
--------->
At4g35610
--------->
ANAC58
----------->
HVH21
---------->
DOF2
<---------
At4g35610
--------->
MYB52(1)
----------->
TGA1
---------->
DOF2
-----
ANAC58
--------->
YAB1
----------->
TGA1
<---------
ANAC58
<------
ZmHOX2a(1)
-----
ANAC58
<---------
ICU4
----------->
HVH21
<---------
ANAC58
<---------
TOE2(3)
ttgagcagccctaatcatagtctcgaaacgagccctgacggaagaagaagaagaagatggagtgacgtcatcagaatccctaaggaaagtaaagggtcgt
871000
<---------
HSFC1(2)
<---------
HSFB2a(1)
--------->
HSFB2a(1)
--------->
HSFC1(2)
--------->
ARR14(2)
--------->
ATHB12
--------->
HSFB2a(2)
<---------
YAB1
--------->
GLK1(2)
<---------
HSFB2a(2)
----------->
GT1
<---------
ARR14(2)
<---------
LBD16
<------
MYB46(1)
--------->
ARR14(2)
<---------
ANAC46
<------
MYB83
<---------
WOX13(1)
<---------
LBD16
<---------
TOE2(3)
<---------
GLK1(2)
---
MYB46(3)
<----------
DOF2
--------->
MYB59
----------->
HVH21
<---------
ZAT14
tcagtttcgggaacttctttctcaattgagactgaacatcgcaaggcgagattaggtttatttctgattggacgggagaatctgagagtagagggattgg
871100
------>
ZmHOX2a(2)
--------->
ICU4
--------->
TOE1(2)
--------->
ANAC58
<---
<---------
ICU4
---------->
DOF2
<---------
At4g35610
----
--------->
YAB1
---------->
DOF2
<------
ZmHOX2a(1)
--------->
ANAC58
--------->
ARR14(2)
--------->
ICU4
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
--------->
At4g35610
<---------
ARR14(2)
gagaataatgaagacgatgagaggagaaaggagcgaaagtaggagaagagaggagagtcgacgagtgagaagccat
gtttgatccgaatttggatttgat
871200
-------->
ZAP1
<---------
WRKY18(1)
<---------
YAB1
--------->
YAB1
<-----------
GT1
--------->
ICU4
<---------
AHL20(2)
<---------
ATHB12
<---------
At4g35610
*
TSS
--------->
AHL20(2)
<---------
At4g35610
<---------
AHL20(2)
>>>>>>>>>
TBF1
<---------
RVE1(1)
<---------
ZAT14
<----------
DOF2
---
------
At4g35610
--------->
ARR11(3)
--------->
ZAT18
<----------
DOF2
--------->
At4g35610
----->
At4g35610
<---------
ARR11(3)
<---------
SPL7
<---------
At5g28300
<-----------
GT1
gctgaagaagaa
gatgatgatggagagatattaaatgataagaagtcttcgtcgtccactgattttgaccgctcttcctttttatttaacagctcaaggt
871300
<---------
RAP2.6(2)
<---------
ANAC58
<---------
ANAC46
--------->
ANAC55(2)
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
<----------
DOF2
------>
MYB83
<---------
ANAC58
--------->
AtMYB61
<---------
YAB1
<---------
MYB59
--------->
AHL20(2)
<------
MYB83
--------->
RAP2.6(2)
<---------
AHL20(2)
<------
MYB46(1)
--------->
ANAC46
<---------
ANAC55(2)
----------
--------->
ATHB51
------>
MYB46(1)
--------->
AHL20(2)
--------
--------->
AHL20(2)
--------->
ANAC55(1)
<---------
AHL20(2)
------->
DOF2
<---------
AHL20(2)
--------->
ANAC46
<---------
LBD16
<--
aaaagaaaacacagttccagtcttctcagactaaaccacttctgaattatttagccgaaaccaaaccagacacgaaattaaaattgcggtttaatttggt
871400
<---------
ZAT18
<---------
ARR14(2)
--------->
ANAC46
<---------
ARR11(3)
--------->
ANAC55(2)
--------->
ARR14(2)
--------->
ANAC58
--------->
ARR11(3)
--------->
ANAC58
--------->
ARR14(3)
----------------->
AGL1
--------->
RAP2.6(3)
<---------
ARR14(3)
<-----------------
AGL1
<---------
At5g28300
----------->
ARR10
<---------
WOX13(1)
<---------
LBD16
--------->
DEAR3(2)
<----------
DOF2
----------------------->
TaNAC69(2)
----------->
WRI1
------->
GAMYB
--------->
ATHB12
--------->
ZAT18
->
MYB59
--------->
ANAC58
--------->
MYB52(1)
--------->
MYB59
<----------
DOF2
-------
SPL7
--------->
ANAC58
------>
ZmHOX2a(1)
----------------->
AGL1
<---------
LBD16
cgaaccgaagatattgatacacaataggctcttatccttcttaacgggcttaattgcccaaattaggcccaaaacgattagccggtttacggcactatgc
871500
<----------
DOF2
<---------
ARR11(3)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
AHL20(1)
----------->
GT1
<---------
ARR14(2)
<-----------
HVH21
<<<<<<<<<
GATA-1
--------->
YAB1
--------->
ARR14(2)
<---------
ICU4
<---------
AHL20(2)
--------->
ARR14(2)
<-------
TEIL
--------->
YAB1
--------->
AHL20(1)
<---------
ARR14(2)
<---------
GLK1(2)
<---------
ATHB12
<---------
CCA1(2)
--------->
GLK1(2)
--------->
ARR11(1)
----------->
GT1
<---------
ANAC55(2)
<---------
GLK1(2)
<---------
YAB1
------>
ZmHOX2a(1)
<---------
ANAC46
--------->
ANAC55(2)
--------->
TOE2(3)
---------->
DOF2
--------->
ARR14(1)
tattttgatgtggataaatcatggtcatgtaatatatctttatctatcgttagaatctgtgataaacaaaacaaaagtgtattatagattcgaatcctat
871600
---------
<---------
YAB1
<------
MYB46(1)
<---------
AHL20(2)
--------->
ALFIN1
-------->
HAHB4
<--------
P
-------->
ATHB1
<---------
MYB52(1)
<--------
HAHB4
------>
NtERF2
<---------
LBD16
--------->
ATHB51
----------->
HVH21
<-------
GAMYB
--------->
YAB1
--------->
At4g35610
<---------
MYB52(1)
<---------
ICU4
<---------
AHL20(2)
<---------
ARR14(2)
<---------
ATHB12
------->
GAMYB
----------->
GT1
--------->
ARR14(2)
--------->
ICU4
------>
MYB46(1)
--------->
MYB46(3)
--------->
AHL20(2)
--------->
GLK1(2)
<---------
ATHB51
------>
MYB83
<-----------
GT1
<---------------
AGL15
<---------
GLK1(1)
<---------
YAB1
<-----------
GT1
--------->
YAB1
--------------->
AGL15
---------->
DOF2
<------
MYB83
ctaattattatttcaaataaccaaatagatgtaattacaaccgtcttattctttccaaaaaatagttaatcgctgacaaaagaaaatccggttgggccca
871700
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AGI:
At1g03475.1
Description:
LIN2 (LESION INITIATION 2); coproporphyrinogen oxidase. Identical to Coproporphyrinogen III oxidase, chloroplast precursor (CPX) [Arabidopsis Thaliana] (GB:Q9LR75;GB:Q546I5;GB:Q94JR5); similar to HEMF2, coproporphyrinogen oxidase [Arabidopsis thaliana] (TAIR:AT4G03205.2); similar to Coproporphyrinogen III oxidase, chloroplast precursor (Coproporphyrinogenase) (Coprogen oxidase) (GB:P35055); contains InterPro domain Coproporphyrinogen III oxidase; (InterPro:IPR001260)
Range:
from: 869051
to: 871212
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.