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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                                   -
                                                                                                 <--
                                                                                                 <--
                                                                                               -----
                                                                                --------->ARR11(3)--
                                                                            ========================
              <---------At4g35610            ---------->DOF2                ---------->DOF2 ------>ZmHOX2a(1)
        <----------DOF2                --------->ZAT6                 <----------DOF2       --------
-------->At4g35610            <------ZmHOX2a(1)                       ==============================
-------->ZAT2 --------->At4g35610<------NtERF2   ----------->RAV1(1)--------->At4g35610   --------->SPL7
---------At4g35610         <-----------RAV1(2)  --------->MYB46(3)  --------->ZAT2      <-----------HVH21
------->GLK1(2)           XXXXXXXXXXXXXXXXXXXX>MIR390A/B       --------->ZAT6   <---------ARR11(3)==
 
gaagctgagccctttgcagctctataagcttcaggaggcataacaccataaaccacagagacattaacaccagctttctcaaagacattcccgtcctgca  870800
                    <---------ALFIN1
               ------>NtERF2
              --------->DREB2C(2)
              --------->ANAC58
              --------->ANAC58
              --------->DEAR4(1)
              --------->RAP2.6(2)
 --------->ANAC58 <---------ATERF1(1)
 --------->TGA1a--------->ERF1
 =====================MYC_MYB
 --------->ANAC58<---------ALFIN1
 --------->ANAC46--------->DEAR3(1)
-------->ANAC46<---------ATERF1(1)
-------ALFIN1 --------->ANAC46
-------MYB52(2)--------->ABI4(1)             <----------DOF2
------>RAV1(1)--------->DEAR3(1)    ------>MYB46(1)
----->GAMYB   ------->GAMYB         ------>MYB83
===========bZIP_DOF --------->AtMYB61  --------->ARR11(3)
->AtLEC2     --------->MYB46(3)   --------->AtMYB61     <------ZmHOX2a(1)                      <----
===========bZIP_DOF--------->MYB46(3)  <---------ARR11(3)  --------->DEAR3(1)                  <----
===========MYC_MYB------>NtERF2   <---------MYB59   --------->TOE1(2)                      <<<<<<<<<TAC1
 
acacacgactgattccaccgccaccaccaggtcgagaccaaacatcttctttaaacttaggaccgccttctatagcttcaattgcatcacaaacactgtc  870900
                                                                       --------->GLK1(2)
                                                                       <---------ARR14(2)
                                                                       --------->ARR14(2)
                                                                      <---------GLK1(2)
                                                                   --------->YAB1
                                                                  <---------At4g35610
                                                                  --------->At4g35610
                                                               --------->TGA2(2)
                                                              <-----------TGA1
                                                             --------->bZIP60(2)
                                                             --------->TGA1a
                                                             <---------bZIP60(1)
                                                             --------->ANAC55(2)
                                                             <---------bZIP60(2)
                                                             --------->TGA2(1)
                                                             <---------TGA1a
                                                             --------->bZIP60(1)
                                                             <---------TGA2(1)
                                                             >>>>>>>>>>HY5
                                                             --------->ANAC58
                                                             <---------O2
                                                             --------->O2
                                                             ===============================bZIP_DOF
                                                             ===============================bZIP_DOF
                                                             --------->ANAC58
                  <---------HSFB2a(2)         >>>>>>>>>TBF1  <---------ANAC46
          <---------YAB1                   >>>>>>>>>TBF1     <---------ANAC55(2)
          <---------ATHB12              >>>>>>>>>TBF1       ----------->STF1
  --------->DEAR3(1)              --------->ANAC58          <-----------STF1                 <------
--------->At4g35610               --------->ANAC58        ----------->HVH21           ---------->DOF2
<---------At4g35610             --------->MYB52(1)        ----------->TGA1       ---------->DOF2
-----ANAC58--------->YAB1      ----------->TGA1         <---------ANAC58        <------ZmHOX2a(1)
-----ANAC58<---------ICU4      ----------->HVH21        <---------ANAC58      <---------TOE2(3)
 
ttgagcagccctaatcatagtctcgaaacgagccctgacggaagaagaagaagaagatggagtgacgtcatcagaatccctaaggaaagtaaagggtcgt  871000
        <---------HSFC1(2)
        <---------HSFB2a(1)
        --------->HSFB2a(1)
        --------->HSFC1(2)
       --------->ARR14(2)                                    --------->ATHB12
    --------->HSFB2a(2)                                     <---------YAB1 --------->GLK1(2)
    <---------HSFB2a(2)                           ----------->GT1          <---------ARR14(2)
   <---------LBD16                                <------MYB46(1)          --------->ARR14(2)
   <---------ANAC46                               <------MYB83 <---------WOX13(1)
  <---------LBD16                                <---------TOE2(3)        <---------GLK1(2)
---MYB46(3)  <----------DOF2                     --------->MYB59 ----------->HVH21 <---------ZAT14
 
tcagtttcgggaacttctttctcaattgagactgaacatcgcaaggcgagattaggtttatttctgattggacgggagaatctgagagtagagggattgg  871100
                                                                               ------>ZmHOX2a(2)
                                                                       --------->ICU4
                                  --------->TOE1(2)               --------->ANAC58              <---
  <---------ICU4               ---------->DOF2                  <---------At4g35610             ----
  --------->YAB1      ---------->DOF2           <------ZmHOX2a(1) --------->ANAC58 --------->ARR14(2)
 --------->ICU4    <------ZmHOX2a(1)  <------ZmHOX2a(1)         --------->At4g35610<---------ARR14(2)
 
gagaataatgaagacgatgagaggagaaaggagcgaaagtaggagaagagaggagagtcgacgagtgagaagccatgtttgatccgaatttggatttgat  871200
                                                                -------->ZAP1
                                                              <---------WRKY18(1)
             <---------YAB1     --------->YAB1                <-----------GT1
             --------->ICU4 <---------AHL20(2)         <---------ATHB12                <---------At4g35610
           *TSS            --------->AHL20(2)        <---------At4g35610      <---------AHL20(2)
   >>>>>>>>>TBF1        <---------RVE1(1)          <---------ZAT14        <----------DOF2        ---
------At4g35610        --------->ARR11(3)          --------->ZAT18  <----------DOF2    --------->At4g35610
----->At4g35610        <---------ARR11(3)        <---------SPL7<---------At5g28300 <-----------GT1
 
gctgaagaagaagatgatgatggagagatattaaatgataagaagtcttcgtcgtccactgattttgaccgctcttcctttttatttaacagctcaaggt  871300
                                                                                  <---------RAP2.6(2)
                                                                                  <---------ANAC58
                                                                                  <---------ANAC46
                                                                    --------->ANAC55(2)
                                                                    --------->ANAC46
                                                                    --------->ANAC58
                                                                    --------->ANAC58 <----------DOF2
                                                           ------>MYB83           <---------ANAC58
                                                         --------->AtMYB61  <---------YAB1
                                                         <---------MYB59   --------->AHL20(2)<------MYB83
                                                   --------->RAP2.6(2)     <---------AHL20(2)<------MYB46(1)
                                                   --------->ANAC46 <---------ANAC55(2)   ----------
                                           --------->ATHB51------>MYB46(1)--------->AHL20(2)--------
                                           --------->AHL20(2)       --------->ANAC55(1)<---------AHL20(2)
------->DOF2                               <---------AHL20(2)  --------->ANAC46  <---------LBD16 <--
 
aaaagaaaacacagttccagtcttctcagactaaaccacttctgaattatttagccgaaaccaaaccagacacgaaattaaaattgcggtttaatttggt  871400
                                                                                       <---------ZAT18
      <---------ARR14(2)                                                             --------->ANAC46
      <---------ARR11(3)                                                             --------->ANAC55(2)
      --------->ARR14(2)                                                             --------->ANAC58
      --------->ARR11(3)                                                             --------->ANAC58
      --------->ARR14(3)                             ----------------->AGL1         --------->RAP2.6(3)
      <---------ARR14(3)                             <-----------------AGL1         <---------At5g28300
    ----------->ARR10                            <---------WOX13(1)                 <---------LBD16
--------->DEAR3(2)                           <----------DOF2            ----------------------->TaNAC69(2)
----------->WRI1                         ------->GAMYB                 --------->ATHB12--------->ZAT18
->MYB59        --------->ANAC58       --------->MYB52(1)    --------->MYB59      <----------DOF2
-------SPL7    --------->ANAC58  ------>ZmHOX2a(1)  ----------------->AGL1   <---------LBD16
 
cgaaccgaagatattgatacacaataggctcttatccttcttaacgggcttaattgcccaaattaggcccaaaacgattagccggtttacggcactatgc  871500
                                  <----------DOF2
                               <---------ARR11(3)
                               --------->ARR11(3)
                             <---------ARR11(3)
                             --------->ARR11(3)
                             <---------AHL20(1)
                       ----------->GT1                                                   <---------ARR14(2)
                   <-----------HVH21  <<<<<<<<<GATA-1   --------->YAB1                   --------->ARR14(2)
               <---------ICU4<---------AHL20(2)   --------->ARR14(2)                 <-------TEIL
               --------->YAB1--------->AHL20(1)   <---------ARR14(2)               <---------GLK1(2)
              <---------ATHB12<---------CCA1(2)   --------->GLK1(2)                --------->ARR11(1)
       ----------->GT1 <---------ANAC55(2)       <---------GLK1(2)           <---------YAB1  ------>ZmHOX2a(1)
    <---------ANAC46   --------->ANAC55(2)  --------->TOE2(3)        ---------->DOF2--------->ARR14(1)
 
tattttgatgtggataaatcatggtcatgtaatatatctttatctatcgttagaatctgtgataaacaaaacaaaagtgtattatagattcgaatcctat  871600
                                                                                           ---------
   <---------YAB1                                                                        <------MYB46(1)
 <---------AHL20(2)                                                                    --------->ALFIN1
 -------->HAHB4                                                                        <--------P
 -------->ATHB1                                                                        <---------MYB52(1)
 <--------HAHB4                                                       ------>NtERF2<---------LBD16
 --------->ATHB51                                                    ----------->HVH21<-------GAMYB
 --------->YAB1                                                    --------->At4g35610<---------MYB52(1)
 <---------ICU4                                               <---------AHL20(2) <---------ARR14(2)
<---------ATHB12                     ------->GAMYB         ----------->GT1       --------->ARR14(2)
--------->ICU4     ------>MYB46(1)  --------->MYB46(3)--------->AHL20(2)         --------->GLK1(2)
<---------ATHB51   ------>MYB83<-----------GT1      <---------------AGL15       <---------GLK1(1)
<---------YAB1<-----------GT1  --------->YAB1       --------------->AGL15 ---------->DOF2<------MYB83
 
ctaattattatttcaaataaccaaatagatgtaattacaaccgtcttattctttccaaaaaatagttaatcgctgacaaaagaaaatccggttgggccca  871700
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AGI:  At1g03475.1   
Description:  LIN2 (LESION INITIATION 2); coproporphyrinogen oxidase. Identical to Coproporphyrinogen III oxidase, chloroplast precursor (CPX) [Arabidopsis Thaliana] (GB:Q9LR75;GB:Q546I5;GB:Q94JR5); similar to HEMF2, coproporphyrinogen oxidase [Arabidopsis thaliana] (TAIR:AT4G03205.2); similar to Coproporphyrinogen III oxidase, chloroplast precursor (Coproporphyrinogenase) (Coprogen oxidase) (GB:P35055); contains InterPro domain Coproporphyrinogen III oxidase; (InterPro:IPR001260)
Range:  from: 869051    to: 871212    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.