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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
MYB46(3)
>>>>>>>>>
MYB98
------>
MYB46(1)
<---------
MYB46(2)
<---------
YAB1
<---------
MYB111(2)
-------->
HAHB4
<---------
MYB111(1)
<---------
ICU4
------->
GAMYB
<------------
MYB.PH3(2)
--------->
ICU4
-------->
MYB46(3)
--------->
AHL20(2)
<---------
ATHB51
------>
MYB52(1)
<----------
DOF2
<---------
CCA1(2)
<---------
AHL20(2)
--->
ANAC58
--------->
MYB52(1)
----------------------->
TaNAC69(2)
--
--->
ANAC58
------>
MYB83
--------->
ZAT2
--------->
AHL20(2)
<---------
--->
ANAC46
--------->
MYB55(1)
<---------
At4g35610
<---------
ATHB12
<---------
ARR11(3)
->
ZAT6
<---------
MYB59
<---------
ZAT2
------>
NtERF2
--------->
YAB1
--------->
YAB1
caacagccactacctaacaaacacttttaatagttccagctcgtatcgtttttcatgcctccaaagattaattatgattttcaaaatcatttataactat
739300
--------->
YAB1
--------------->
AGL15
------->
MYC3
<---------------
AGL15
<-------
MYC3
------>
ZmHOX2a(2)
<---------
AHL20(2)
<---------
ALFIN1
--------->
ARR11(3)
--------->
AHL20(2)
------->
ANAC46
<<<<<<<<<<
WRKY63
----------------->
AGL2
<XXXXXXXXXXXXXXXXXXX
--
GT1
<----------
DOF2
<---------
ARR11(3)
--------->
TOE2(3)
ccctccacatgtctttaatagtcaaattgatcttatattaaaaactctatatagtaagaccaagtgaattttaaaattacatcaatgcgatttatatgga
739400
<---------
ANAC46
--------->
AHL20(2)
--------->
TOE2(3)
<---------
AHL20(2)
--------->
YAB1
<---------
ARR14(2)
--------->
AHL20(2)
<----------
DOF2
--------->
ARR14(2)
---------->
DOF2
---------->
DOF2
------>
NtERF2
<---------
ANAC58
--------->
YAB1
XX
MIR393A/B
<---------
AHL20(2)
--------->
AtLEC2
<---------
ANAC58
--------->
AHL20(2)
--
tgattcaaaagtatttatatttcaaaactgaaacaaggccttgcagcctttcttaatgcttcgtgcagataggcccattaataaaacaataaagcccata
739500
<-----------
TGA1
<-----------
HVH21
--------->
ANAC58
--------->
ANAC55(1)
--------->
bZIP60(1)
<---------
TGA1a
<---------
O2
--------->
ANAC58
<---------
bZIP60(1)
--------->
bZIP60(2)
<<<<<<<<<<
HY5
--------->
O2
--------->
TGA1a
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
--------->
ARR14(2)
--------->
ANAC46
------>
MYB83
<---------
ARR14(2)
--------->
ANAC58
------>
MYB46(1)
<---------
ANAC55(2)
--------->
ANAC55(1)
--------->
AtMYB61
<----------
TaMYB80
--------->
ANAC46
<---------
ARR14(2)
=======================
bZIP_DOF
--------->
ANAC58
--------->
bZIP60(2)
<---------
MYB59
---------->
TaMYB80
---------->
DOF2
<---------
ALFIN1
--------->
MYB46(3)
--------->
ANAC46
----------->
GT1
<------
NtERF2
--------->
ARR14(2)
---------->
DOF2
<---------
ANAC55(2)
--------->
RAP2.6(2)
<---------
ETT(1)
--------->
DAG2
--------->
MYB59
------->
GAMYB
--------->
GLK1(1)
--------->
YAB1
--------->
ANAC55(2)
--------->
GT1
<---------
ANAC55(2)
<---------
CCA1(2)
<---------
YAB1
<-----------
STF1
cttgtaaaatcaggtaaagacgcaacgcaagcggcacatcagacacatatccattccgaccaaaccatgataaagtatatgccacgtcactattcatcgt
739600
------>
MYB83
------>
MYB46(1)
----------->
RAV1(1)
>>>>>>>>>>
WRKY43
>>>>>>>>>>
WRKY38
>>>>>>>>>>
WRKY26
<------------
CBF
--------->
HSFC1(2)
--------->
ANAC55(2)
<---------
HSFC1(2)
--------->
ANAC58
--------->
At4g35610
<---------
HSFB2a(1)
--------->
ANAC58
<------
MYB46(1)
<---------
At4g35610
--------->
ZAT14
--------->
ANAC46
<------
MYB83
<-------
GAMYB
*
TSS
--------->
HSFB2a(1)
<-----------
GT1
<---------
MYB52(1)
------->
GAMYB
<---------
ALFIN1
<---------
LBD16
cgattagtttttacgaaattgaccaacataccctcgttgtttggttttatctacaacgcagttgctgagtcacacttg
ttttcttcactcggaaaattcg
739700
------
<------
NtERF2
<-------
<--------
------>
NtERF2
--------->
ARR14(2)
<---------
ARR14(2)
--------->
ATERF1(1)
<---------
ATERF1(1)
--------->
LBD16
<---------
HSFB2a(1)
------>
NtERF2
--------->
ZAT18
<-------
TEIL
<---------
RAP2.6(2)
<---------
PCF2
--------->
KAN4(1)
<---------
LBD16
<---------
ZAT18
--------->
KAN4(2)
<-----------
GT1
--------->
ALFIN1
<---------
HSFC1(2)
<---------
AHL20(1)
<---------
ANAC46
--------->
HSFB2a(1)
--------->
AHL20(1)
----------->
TGA1
<---------
KAN4(1)
<---------
ARR11(3)
<---------
ICU4
--------->
ANAC46
--------->
ARR11(3)
--------->
YAB1
<---------
LBD16
--------->
CCA1(2)
<------
ZmHOX2a(2)
--------->
ALFIN1
--------->
HSFC1(2)
--------->
ARR11(3)
<---------
ARR11(3)
<---------
DEAR3(1)
<---------
KAN4(2)
<---------
ARR11(3)
aaaatcgagatcaa
atgtcgatgatgacggtgtgggcacttcgacggaatgttcgtcggaaaaatcactcgatgctcgtgagatatatttccggctccgc
739800
<---------
ANAC58
<---------
ANAC46
<---------
ANAC58
<-----------------------
TaNAC69(2)
<------
NtERF2
<---------
DEAR3(1)
<---------
AtMYB61
<---------
YAB1
<-----------
RAV1(1)
--------->
YAB1
--------->
ARR14(3)
<------
ZmHOX2a(2)
<---------
ARR14(2)
--------->
ARR14(2)
<---------
GLK1(2)
<---------
ARR14(2)
<---------
ARR14(3)
--------->
LBD16
--->
LBD16
<---------
ARR11(3)
<---------
LBD16
--
LBD16
----------->
ARR10
<---------
ANAC58
-
ATERF1(1)
<------
ZmHOX2a(1)
--------->
ARR11(3)
<---------
ANAC58
atcgatgaagcctaaggagcaatgtattgagaagattttggtggcgaacagaggcgagattgcttgccggatcatgagaacggcgaagcgtttagggatt
739900
<------
NtERF2
<---------
ALFIN1
--------->
ANAC58
--------->
ARR14(2)
<---------
ARR14(2)
--------->
ANAC55(2)
<---------
At4g35610
--------->
ANAC58
<---------
ANAC46
--------->
ANAC58
----------->
HVH21
--------->
ARR14(2)
<---------
ANAC55(2)
<---------
At5g28300
--------->
GLK1(1)
--------->
SPL1(2)
<----------
DOF2
--------->
CCA1(2)
--------->
SPL7
--------->
DEAR3(1)
<---------
ANAC58
--------->
ARR14(1)
--------->
SPL1(1)
<---------
RAP2.6(2)
--------->
ARR14(2)
<---------------
AtSPL3
<---------
ANAC46
<---------
ARR14(2)
--------------->
AtSPL3
<---------
ANAC58
<---------
GLK1(2)
<---------
At4g35610
--------->
ANAC58
--
<---------
MYB52(1)
--------->
ARR11(1)
--------->
At4g35610
<---------
WOX13(1)
<---------
ZAT6
<-------
GAMYB
----------->
TGA1
<-------
TEIL
<---------
GLK1(1)
<---------
SPL7
------>
NtERF2
<----
cagaccgttgcggtttacagtgacgctgatagagattcgctccatgtgaaatctgcagacgaagcggtacggattggcccgccctcggctagacttagtt
740000
--------->
ZAT18
--------->
ZAT14
<---------
ZAT14
--------->
YAB1
--------->
ALFIN1
--------->
KAN4(1)
----------->
HVH21
<---------
KAN4(1)
<---------
DEAR3(1)
<---------
KAN4(2)
--------->
ATERF1(1)
--------->
YAB1
<---------
At4g35610
---------->
DOF2
--------->
ALFIN1
<------
NtERF2
<---------
ZAT18
--------->
LBD16
<---------
DEAR3(1)
--------->
At4g35610
--------->
LBD16
<---------
At4g35610
<---------
ATERF1(1)
--------->
ANAC46
--------->
At4g35610
--------->
ATERF1(1)
<---------
HSFB2a(2)
---------->
CDC5
<------
NtERF2
<-----------
RAV1(1)
--------->
LBD16
------->
TOE2(3)
--------->
YAB1
<---------
ANAC46
<---------
LBD16
--------->
At4g35610
-------
GT1
<---------
YAB1
--------->
ZAT2
------>
ZmHOX2a(2)
<---------
At4g35610
acctcagcggtgtgactatcatggaggcagcggctcggactggtgcacag
gtatgagttttgatccccgaaaaagaataatcgtgttcttgtagctgatg
740100
--------->
HSFB2a(1)
<---------
HSFC1(2)
<---------
HSFB2a(1)
--------->
HSFC1(2)
--------->
ARR14(2)
<-----------
GT1
---------->
DOF2
<---------
ARR14(2)
<---------
AHL20(2)
<-----------
HVH21
--------->
ARR11(1)
--------->
AHL20(2)
<---------
ANAC58
<---------
ALFIN1
<----
<----------
DOF2
<---------
ANAC58
<----------
DOF2
<------
ZmHOX2a(1)
----
tcttctttgaattatataactag
gcaatacaccctggctatgggttcttgtcagaaagttctgactttgcccaactctgtgaggattcgggtctaacatt
740200
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AGI:
At1g03090.1
Description:
MCCA (3-methylcrotonyl-CoA carboxylase 1). Identical to Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor (MCCA) [Arabidopsis Thaliana] (GB:Q42523;GB:Q9SA61); similar to CAC2 (acetyl co-enzyme A carboxylase biotin carboxylase subunit) [Arabidopsis thaliana] (TAIR:AT5G35360.1); similar to Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor (3-methylcrotonyl-CoA carboxylase 1) (MCCase subunit alpha) (3-methylcrotonyl-CoA:carbon dioxide ligase subunit alpha) (GB:Q42777); similar to 3-methylcrotonyl-CoA carboxylase, biotin-carrier domain (GB:AAA53140.1); similar to unnamed protein product [Vitis vinifera]
Range:
from: 739679
to: 744184
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.