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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------>
NtERF2
--------->
DEAR3(1)
--------->
RAP2.3(3)
--------->
ERF1
--------->
At4g35610
--------->
DEAR3(1)
--------->
MYB46(3)
<---------
YAB1
--------->
ARR14(2)
<---------
ICU4
------->
TEIL
<---------
At4g35610
--------->
YAB1
--------->
MYB52(1)
------
--------->
ZAT2
<---------
GLK1(1)
--------->
ANAC46
--------->
ZAT14
<---------
ZAT2
--------->
GLK1(1)
--------->
ANAC58
<---------
At4g35610
------->
LBD16
--------->
At4g35610
<----------
DOF2
--------->
ANAC58
--------->
ABI4(1)
------->
At5g28300
----------->
RAV1(1)
<---------
DAG2
---------->
DOF2
<---------
ARR14(2)
------
-->
ZAT18
<---------
At4g35610
---------->
DOF2
<---------
YAB1
<---------
ALFIN1
--------->
ANAC46
ccgtgaaacagtcgctgcttctccagcagaactcaaaagaattccctttattattattcacaaaagcctcac
ccaaacgaatccaccgcagccaaaac
ct
37400
<---------
ARR11(1)
<---------
ANAC58
<---------
ANAC58
<---------
ANAC55(2)
--------->
ANAC55(2)
<-------
TEIL
<---------
ARR14(2)
-
<---------
ARR11(3)
<---------
GLK1(2)
--
--------->
ARR11(3)
--------->
ARR14(2)
<---
--------->
ARR14(2)
--------->
YAB1
<---------
AHL20(2)
----
<---------
ARR14(2)
<---------
ATHB12
----------->
GT1
----
<---------
CCA1(2)
--------->
MYB46(3)
<----------
DOF2
--------->
ARR11(3)
<---
--->
TOE1(3)
--------->
WOX13(1)
<---------
YAB1
<---------
TOE2(3)
--------->
HSFB2a(2)
--->
TOE2(3)
<---------
ATHB12
<---------
CCA1(2)
<---------
At4g35610
<---------
HSFB2a(2)
tcacaaatcttcatatcagtaatcaatcaccagattcgtatcatttatgctaacttttagagctaataagatttagttaatcgcttctataagtttctca
37500
------>
ZmHOX2a(2)
======================
HOX2a_HOX2a
============================
HOX2a_HOX2a
<------
ZmHOX2a(2)
=======================
HOX2a_HOX2a
=============================
HOX2a_HOX2a
--------->
ARR11(3)
<---------
GLK1(1)
--------->
GLK1(1)
--------->
MYB52(1)
-------->
At4g35610
------->
RAP2.6(2)
----------->
GT1
------
ZAT2
--------->
AGP1
--------->
HSFB2a(2)
--------->
ANAC58
----->
At4g35610
------>
ZmHOX2a(1)
--------->
ANAC58
----->
ZAT2
<---------
ARR11(3)
<---------
HSFB2a(2)
----------->
GT1
<----------
ID1
------
At4g35610
<------
ZmHOX2a(1)
--------->
YAB1
<-----------
GT1
<------
ZmHOX2a(1)
gcagccaaacagagatcttagtatgttataggaatcctagaaactgctcataatgtaaactgttatac
ccttgagagtagccatggaggagacaagtatg
37600
--------->
LBD16
--------->
ANAC46
--------->
LBD16
-------
--------->
HSFB2a(2)
<------
<---------
LBD16
<------
--------->
LBD16
--------->
YAB1
-------
<---------
GLK1(1)
--------->
ICU4
<-------
--------->
GLK1(1)
--------->
LBD16
--------
--------->
LBD16
--------->
ANAC46
--------->
YAB1
<---------
LBD16
--------->
HSFB2a(2)
--------->
ARR11(3)
<---------
LBD16
--------->
LBD16
--------->
RVE1(1)
----------->
HVH21
<---------
LBD16
--------->
CCA1(1)
<-
--------->
At4g35610
<---------
HSFB2a(2)
--------->
AHL20(2)
---
<---------
At4g35610
--------->
HSFB2a(2)
--------->
ANAC58
--------->
GLK1(2)
--
--------->
YAB1
<---------
HSFB2a(2)
<---------
HSFB2a(2)
--------->
ANAC58
<---------
ARR11(3)
caatctgacttatcatctcaccgggaactccccggagaagtcatcgttcccggaaataatcaaatcggaagcaaaacaaaaaaaaatctctaaaaataaa
37700
--------->
MYB52(1)
>>>>>>>>>
TBF1
-->
AHL20(1)
>>>>>>>>>
TBF1
>>>>>>>>>
TBF1
---
AHL20(1)
>>>>>>>>>
TBF1
>>>>>>>>>
TBF1
---
AHL20(2)
>>>>>>>>>
TBF1
>>>>>>>>>
TBF1
-->
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--
AHL20(2)
>>>>>>>>>
TBF1
------------------------>
ANAC81
->
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------
AHL20(2)
>>>>>>>>>
TBF1
>>>>>>>>>
TBF1
------>
AHL20(2)
--------->
MYB52(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
------->
AHL20(2)
<---------
ARR11(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<---------
TOE2(3)
tttaaaaaacagagagaagaaggaagaagataactgaagaagaagaagaagaagaagaagaagaagaagaaggaagactgttttaggctgaagaagactg
37800
----------->
GT1
<---------
WOX13(1)
----------->
RAV1(1)
<------------
CBF
--------->
ANAC58
--------->
RAP2.6(2)
<---------
AHL20(2)
--------->
ANAC58
--------->
ANAC46
<---------
YAB1
>>>>>>>>>
TBF1
--------->
ANAC58
<-----------
GT1
<---------
AHL20(2)
----
>>>>>>>>>
TBF1
--------->
ANAC58
*
TSS
--------->
AHL20(2)
<---------
TOE2(3)
gaagaagaagaagagaagccagaagcaatctcagccacaa
caatttttcccctaatttttggaaaaattttaattgaaaagtttatttgaggctggaaca
37900
--------->
ARR11(3)
----------->
GT1
--------->
ALFIN1
<-------
PIF5
------->
PIF5
------->
MYC4
<-------
MYC4
------->
MYC3
------->
MYC2
<----------
DOF2
<-------
MYC3
<---------
DAG2
<-------
MYC2
<---------------
AGL15
--------->
ANAC55(2)
--------------->
AGL15
--------->
TGA1a
<-----------------
AG
===========================================
bZIP_DOF
<---------
O2
<---------
ZAT18
--------->
O2
<---------
ZAT14
<---------
ANAC55(2)
--------->
ZAT18
<---------
TGA1a
--------->
ZAT14
------------>
OsbHLH66
--------->
ANAC46
<---------
ALFIN1
--------->
At4g35610
<---
----------->
GT1
--------->
ARR14(2)
--------->
ETT(2)
<---
----------->
TBP
<---------
ARR14(2)
<---------
ZAT14
--------->
ARR11(3)
----------->
GT1
<-----------
ARR10
<---------
ETT(2)
<---------
ARR11(3)
----->
At4g35610
--------->
MYB52(1)
<------
ZmHOX2a(2)
--------->
ZAT14
<---------
CCA1(2)
gcaccaagggtataaatggaaaaaacagaagtcatcgcagatcgacacgtggtgatattgtagtggctgtctactgcactttttggtatatctcaagttg
38000
--------->
DAG2
--------->
ZAT18
---------->
DOF2
<---------
ZAT18
<------
MYB46(1)
--------->
PCF5
<------
MYB83
--------->
ALFIN1
---------------
<---------
TOE2(2)
<---------
MYB46(3)
<---------
YAB1
<---------
TOE1(2)
<---------
AtMYB61
--------->
ICU4
<---------
TGA1a
<---------
AtMYB61
<---------
DOF5.7(2)
--------->
ANAC46
--------->
ZAT18
--------->
REM1(2)
--------->
O2
<---------
ZAT14
<---------
ANAC58
--------->
TGA1a
--------->
ZAT14
<---------
ANAC46
--------->
At4g35610
--------->
ALFIN1
<---------
ANAC58
<---------
HSFC1(2)
<---------
O2
<---------
ANAC58
<---------
ANAC55(1)
<-----------
RAV1(2)
===================
bZIP_DOF
<---------
ANAC58
<--------------
--------->
ANAC46
<---------
At4g35610
<---------
ANAC58
<---------
ANAC58
--------->
ATHB12
------
ANAC58
--------->
HSFC1(2)
--------->
ANAC55(2)
--------->
ALFIN1
--------->
ANAC55(2)
------
ANAC58
<---------
GLK1(2)
<---------
ANAC55(2)
<---------
ANAC46
<---------
ANAC55(2)
cttctctacgagccagaagcttcaatgtgaagctcacgtaggtaaaagtgagtgtggtggtccacaattgcttacgtgtaaacgattattggtacaaact
38100
--------->
ZAT2
<---------
ZAT2
<---------
At4g35610
------>
NtERF2
<-----------
RAV1(2)
--------->
ATERF1(2)
<---------
ATERF1(2)
--------->
ATERF1(1)
<------
NtERF2
------>
NtERF2
--------->
ABI4(2)
<---------
DEAR3(1)
<-------
TEIL
<---------
ARR14(2)
--------->
SPL7
<---------
ANAC46
----------->
GT1
<---------
ARR14(2)
--------->
ANAC55(2)
<---------
ANAC58
<---------
SPL7
--------->
ZAT14
<---------
ANAC58
<---------
PCF2
<---------
ZAT14
<---------
AGP1
<------
MYB83
--------->
At4g35610
<---------
ANAC55(2)
------>
ZmHOX2a(2)
<------
MYB46(1)
--------->
ZAT18
--------->
ARR14(2)
<---------------
AtSPL3
<---------------
AtSPL8
<---------
ARR14(2)
<
<---------
MYB46(3)
<---------
AtMYB61
--------->
ARR11(3)
<---
>
AtSPL8
<---------------
AtSPL8
<---------------
AtSPL3
<---------
ARR11(3)
--------->
ARR11(3)
<
-
AtSPL8
--------->
ALFIN1
----------->
HVH21
--------->
ARR14(2)
<---------
ANAC46
<----
tggacgactaaacaagtgggtacggtgccagctgtgatggtgtactgctacgtattggctatgctggatctgggcttgtaataagacattgtatgggcct
38200
<---------
TOE2(3)
<---------
YAB1
--------
<-----------
GT1
<---------
ZAT2
<---------
ANAC46
<---------
ANAC58
--------->
ZAT2
--------->
LBD16
<-------
--------->
ANAC55(2)
--------->
ANAC58
<---------
ANAC58
--------->
ANAC46
<---------
ANAC46
--------->
ANAC58
<---------
ARR14(2)
--------
---------
DAG2
<---------
ANAC58
<---------
ETT(1)
<---------
LBD16
---------
------
ALFIN1
<---------
AHL20(2)
--------->
ANAC46
<---------
LBD16
<---------
AHL20(2)
----------
DOF2
<---------
AHL20(2)
<-----------
GT1
--------->
ZAT2
<---------
ANAC58
--
NtERF2
--------->
AHL20(2)
--------->
AHL20(2)
<---------
ZAT14
--------->
YAB1
cacttttacgcctattctatataaatttgcgtattaacatagttgaattaaacccgacaagcttggactgctcggggaacttgcgtctgtataaaaatct
38300
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AGI:
At1g01060.1
Description:
LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor. similar to CCA1 (CIRCADIAN CLOCK ASSOCIATED 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46830.1); similar to late elongated hypocotyl [Castanea sativa] (GB:AAU20773.1); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447)
Range:
from: 33666
to: 37840
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.