Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <---------O2 <---------ARR11(3)                                                                        --------->ANAC46                                                                        <---------TGA1a==============                                                                        --------->O2 --------->AGP1                                                                        --------->ANAC58 ------>ZmHOX2a(1)                                                                        --------->TGA1a------>ZmHOX2a(2)                                                                      <---------ALFIN1<------ZmHOX2a(2)                                                        --------->GLK1(2)            --------->ARR11(3)                                                       --------->ARR11(3)            <---------ARR14(2)                                                       <---------ARR14(2)     --------->LBD16                                                ==================================MYC_MYB<---------YAB1                                                <-------GAMYB       ==============bZIP_DOF      <---------DAG2                        --------->GLK1(2)       <----------DOF2  --------->ARR14(2)   --------->AtMYB61                       --------->ARR14(2)       <-----------HVH21<---------GLK1(2)   --------->DEAR3(1)                      <---------GLK1(2)       <---------ANAC58 <---------At4g35610   <---------ALFIN1                        <---------ARR14(2)  ------>ZmHOX2a(2) <-------TEIL  --------->MYB46(3)                   --------->At4g35610     =================================HOX2a_HOX2a -------->ANAC46                       <---------At4g35610   <---------ARR14(2) <-----------HVH21 ---------ALFIN1       <<<<<<<<<TBF1<---------At4g35610--------->ARR14(2)   <---------LBD16<---------GLK1(2) ----->AtMYB61   ------>ZmHOX2a(1)  --------->At4g35610<---------GLK1(2)--------->ANAC58<xxxxxxxxxxxx ---ALFIN1   ------>ZmHOX2a(1)     ------->TEIL<-----------RAV1(1) <---------ANAC58----------->ARR10-   ctccaccaccttctccttcctcttcttcttccttctgcatctgcagattctgttgaagattctgatctggcttcacgtcccggttcagatcctgattcgg  26951800               --------->ALFIN1              --------->ATERF1(1)              <------NtERF2            <---------DEAR3(1)            --------->ALFIN1            <---------ANAC46           --------->ATERF1(1)           <---------LBD16           <------NtERF2           <---------At4g35610           ------>NtERF2          <---------RAP2.3(1)          <---------RRTF1(1)         <---------ANAC46         <---------RAP2.3(3)                                                     --------->ALFIN1         <---------DEAR3(1)   <---------At4g35610                              <---------ANAC46         <---------RRTF1(2)   --------->At4g35610                          <------ZmHOX2a(2)         <---------RRTF1(3)--------->LBD16                                --------->ARR14(2)         <---------RAP2.3(2)  --------->ZAT2                        ----------->HVH21         <---------RAP2.6(2)  <---------ZAT2                        <---------ARR14(2)            <--        <---------LBD16  <---------LBD16                           ================HOX2a_HOX2a    <--     <---------ANAC58<---------REM1(1)                             ===============HOX2a_HOX2a    ----     <---------ANAC58--------->ALFIN1                              <------ZmHOX2a(1)     <------ZmHOX2a(2)    <---------At4g35610 --------->MYB52(1)                         =============================HOX2a_HOX2a    --------->ZAT2<---------AtMYB61                      ==========================HOX2a_HOX2a <----- =======================HOX2a_HOX2a                      <------ZmHOX2a(1)<---------ARR14(2)   ------ xxxxxxxxxsmallRNA(si3) ------->TEIL                     =========================HOX2a_HOX2a  ------ -------->ALFIN1 <------ZmHOX2a(1)        ----------->HVH21--------->GLK1(2)------>ZmHOX2a(2)--------   agatggagcttgcggcggaggaggtgtaccggagcttagaaaccgtgacactggctcgaggaatctagaggagacggatcggcttggagcgatcaaacgt  26951900                                                        ----------->HVH21                                                       ------>ZmHOX2a(2)                                                      <------ZmHOX2a(2)                                                      --------->CCA1(2)                                             --------->ANAC58                                             --------->ANAC58                                      ===============================================================                                      <---------------AGL15                                     ----------------->AGL2                                     ----------------->AGL1                                    <------NtERF2    <---------ARR11(3)        --------->MYB52(2)        <---------RAP2.6(2)--------->ARR14(2) -------TOE2(1)                   --------->ETT(1)   <---------ARR14(2) -------TOE1(1)                  --------->RAP2.6(3) --------->ARR11(3) ----->SPL7                     <-----------HVH21    --------->AGP1 ----SPL7 ---------->ID1       <-----------RAV1(1)  --------->GLK1(1) --->TOE2(2) <------NtERF2     --------->ALFIN1     <---------GLK1(1)                              <- --->TOE1(2)------>NtERF2  --------->At4g35610 ---------->DOF2          <---------YAB1             <- ------->AtSPL3         <------ZmHOX2a(2) <---------ATHB12  --------->AtMYB61  <---------ZAT14     --   acgatgttgttcgtcgccattgttagatcagatgtgtcggccaaatcaagaaagagatccgaccttcacggtttgtgatagtatagggttcgatagtcat  26952000           --------->ATHB51           <---------ICU4           --------->ATHB12          --------->ICU4          <---------YAB1          <---------ATHB51        <---------------AGL15       ----------------->AGL2       ----------------->AGL1       ----------------->AGL3       <-----------------AGL3       ------------>ATHB5                      <---------ICU4    <------MYB83                               --------->YAB1    <------MYB46(1)                            <--------HAHB4     <---------AHL20(1)  <--------P                                   --------->ATHB12   --------->AHL20(1)  --------->ALFIN1                            <---------ATHB12    --------->AHL20(2) =======================MADS_MADS           --------->WOX13(1)    <---------AHL20(2) --------TOE2(3)                           ------------>ATHB5    --------->AHL20(2) --------TOE1(3)   --------->YAB1 <-----------ARR10              <---------AHL20(2) ------->MYB59 ----------->GT1    --------->ARR11(3)         <---------YAB1         ----------->GT1   ttaggttgggccataattggataataagcccagtagtatctaggcccaatcatttacatgtttataaataaattaagagaattagagagtaaatttggcc  26952100                                                                                         --------->At4g35610                                                                                       --------->ZAT18                                                                                      --------->ALFIN1                                                                                    =================                                                                                    <---------TGA1a                                                                                    <---------ANAC58                                                                                    --------->TGA1a                                                                                    <---------bZIP60(2)                                                                                    --------->O2                                                                                    <---------O2                                                                                    <---------ANAC58             <-----------GT1                                                     --------->WRKY12        <---------YAB1       --------->ZAT2                                      ----------->HVH21      <---------ICU4       <------ZmHOX2a(1)                                  *TSS  <---------ANAC46      --------->YAB1    <-----------RAV1(2)                                 ---------->DOF2     --------->ICU4   <-----------HVH21                                     ==================bZIP_DOF   --------->YAB1--------->ANAC58    ----------->HVH21                   ----------->GT1 <---------At4g35610  <---------YAB1 --------->ANAC58   <---------MYB59         <------ZmHOX2a(1)--------->DAG2   cagtataattatgtttaacaagcccatcaggagctaggcctaacatgtttataaaacaaataggagagaattagagggtaaagttgacgtgggctgattt  26952200                 --------->AHL20(1)                 <---------AHL20(1)              --------->AHL20(2)            <-----------TBP          <----------DOF2         --------->TOE2(3)         <---------DAG2      --------->ARR14(2)                                                                      <------    --------->LBD16                                                                          <-------   --------->ANAC46                                                                       --------->MYB46(3)   --------->ANAC58                                                                 --------->REM1(1)   <---------ANAC55(2)                                             --------->ANAC55(2)  --------->MYB52(1)   --------->ANAC58                                            <-----------TGA1     --------->bZIP60(2)   --------->ANAC55(1)                --------->DAG2           <-----------HVH21  <---------ALFIN1   --------->ANAC55(2)      <---------ICU4                 --------->DAG2         ----------->RAV1(1) ====================bZIP_DOF        ---------->DOF2      ---------->DOF2   --------------->AtSPL8   cgaacccgtaacctttttatatattagacctcattaccaaaaagcgattcgattatctcataaagcgtcatgtgtttttttgtgccacatcaacggctgt  26952300     --------->MYB52(2)   <---------MYB52(1)                                  --------->AHL20(2)   <--------P                 <-------GAMYB            <---------AHL20(2) <---------MYB46(3)     <-----------RAV1(2)           --------->AHL20(2)                          --- ----------->GT1    <-----------HVH21        <---------ANAC58                            --------->ICU4 ---MYB46(3)     ---------->DOF2        <------------CBF                              *TSS     <----- --DEAR3(1) ---------->DOF2  ----------->GT1 <---------ANAC58<---------ANAC46       ----------->GT1   gagtggttagtcactaaagaaaagtcacaggctgttatatagtattggcttcgctatttattttcgtctaccacgagaaaaacaagtcgtaattcttcta  26952400                                                                                      --------->ANAC58                                                                            --------->RAP2.6(3)                                                                           <---------ARR14(2)              ----------->RAV1(2)                                          --------->ARR14(2)             --------->ABI4(1)                                            --------->GLK1(1)          <---------At5g28300                                             <---------GLK1(1)      ----         <-----------GT1                                              <-----------------AG---------->DOF2    <---------ARR11(3) ------>ZmHOX2a(2)           ---------->DOF2    ----------------->AGL1     <---    --------->ARR11(3)<------ZmHOX2a(2)     --------->YAB1<---------HSFB2a(2)         --------->ANAC58   <---------GLK1(1) <---------ARR14(2)    <---------ATHB12  <------ZmHOX2a(1)      ---------->DOF2 <   <---------CCA1(2) --------->ARR14(2)   -------->P      --------->HSFB2a(2)     --------->ANAC58  - ------>YAB1 ------>NtERF2             =============================HOX2a_HOX2a   --------->ANAC58--- ----CCA1(2)--------->DEAR3(1)         <------ZmHOX2a(2) <-------TEIL <-----------------AGL1 --------   tcttgatatcttcaccgcctgccgatctctctcaatctccgatcaaccatgagcaaaggtccaggactcttcaccgatatcggcaagaaagccaaaggta  26952500                                                                              <---------ANAC58                                                                              <---------ANAC58                                                                              <---------ANAC46    --------->YAB1                                                        <---------ANAC58   <---------YAB1                                    <-------GAMYB        <---------ANAC58 --------->YAB1                                     --------->LBD16       <---------ANAC46 <---------ICU4                                   <---------LBD16    <---------ICU4 ----->ICU4                                     --------->GLK1(2)   --------->ICU4 ------YAB1                                    <---------GLK1(2)--------->LBD16                 ----- ---------YAB1                               <---------YAB1    --------->ANAC58  <---------ARR14(2) -------->ICU4                               <---------TOE1(3) --------->ANAC46  --------->ARR14(2) ------>YAB1                                 <---------TOE2(3) --------->ANAC58<----------DOF2<------ --->GT1 <---------CCA1(2)               --------->TOE2(3)    <---------LBD16<-------TEIL   ---------   taattatcatcgtatcgctcttcttctatattccttctctcatcgttaagattccggttgaaatcgcgcaattagtgcgtgcgtttatgcctgttcattg  26952600                                                                      <---------ANAC58                                                              --------->AHL20(1)     <---------ARR14(2)                                       <---------AHL20(1)     --------->ARR11(3)                                       <---------AHL20(2)     --------->ARR14(2)                              --------->ARR11(3)       ------>ZmHOX2a(1) ---->ATHB12                               --------->ICU4    --------->AHL20(2) ---WOX13(1)                         <---------WOX13(1)  <---------YAB1     ------>ZmHOX2a(2) >ATHB12                       ------>ZmHOX2a(1)     <---------GLK1(2)<---------ANAC58    <---------At4g35610   attcgaagttctggtgtttcgaatttgtttatcctgtagattgaaatgatttttagattttgattatattttgggtgatcctatcgagtttaagctgttt  26952700  Previous    Next  AGI:  At5g67488.1    Description:  other RNA Range:  from: 26951176    to: 26952093    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g67490.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO48511.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66554.1); similar to Os06g0157800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056861.1); contains InterPro domain Protein of unknown function DUF1674 (InterPro:IPR012875) Range:  from: 26951379    to: 26952178    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g67500.1    Description:  porin, putative. similar to porin, putative [Arabidopsis thaliana] (TAIR:AT3G49920.1); similar to porin-like protein [Brassica napus] (GB:AAW22622.1); contains InterPro domain Porin, eukaryotic type; (InterPro:IPR001925) Range:  from: 26952386    to: 26954709    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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