Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <-------MYC3                                    ------->MYC3                                   <---------TGA1a                                   --------->TGA1a                                   <---------O2                               <-----------HVH21                              <---------ANAC58                    <------NtERF2  <---------ANAC46                   ------>NtERF2----------->HVH21                  <---------ANAC58 <---------ANAC55(2)   --------->AHL20(2)       --------->ALFIN1   <---------AHL20(2)     --------->ALFIN1                                                  ------>NtERF2 ---->ARR11(3)    <---------ANAC46 --------->ANAC55(2)                                    --------->TOE1(1) ---->GLK1(2)     <---------ANAC58 --------->O2          <---------CCA1(2)            -------->P ---AHL20(2)     <<<<<<<<<E2Fc<---------ANAC58      ----------->GT1         --------->AHL20(2)   ---- ->AHL20(2)      <<<<<<<<<E2Fd--------->ANAC46 <-----------GT1  --------->MYB52(1)  --------->MYB46(3)   tctgtttaatttttgttttggcgcgagagtgtgcgtcacgtgaacaaatttacattgttatatcccaaacggagacattaatatgaacaacctcggccat  26677400                                                                            --------->YAB1             <----------DOF2          --------->ZAT14                       <---------ICU4  ---------       --------->ARR14(2)             <---------ZAT18         <---------At4g35610     <---------ZAT18      <---------CCA1(2)      --------->ANAC46                 --------->At4g35610     <---------ZAT14  <-----------HVH21      <-----------GT1            <---------GLK1(2) ------->TEIL    --------->ZAT18 ----->AHL20(2)       ----------->GT1 --------->ZAT18         <---------LBD16 ----------->TGA1   tatatgtcatatcgtctttaaaaaatgttacacaacattgtgaactcaaattcagaaacttgttagcggatgaatcgataatgacgagttcacaatgtaa  26677500                                  --------->ALFIN1  <---------ARR11(3)                                <-----------RAV1(1) --------->ARR11(3)                          <----   --------->YAB1   --------->ANAC58               <---------CCA1(2)     ============================  <---------YAB1    --------->ANAC46        <---------------AtSPL8       <------ZmHOX2a(1)     ------ -->GT1             --------->ANAC58       <---------ANAC46      <----------DOF2             --------   aactatgataacattctcttacacacaaaaactaatgtgggagtaacttgtacatatctctctatttctttcttaggagactaacaatttggaattagat  26677600  --------->ATHB12  --------->YAB1                                                          <---------MYB52(1)  <---------ICU4                                                         <-------GAMYB  <--------ATHB1                                 <---------ANAC58     <---------At5g28300 --------->ICU4                                  <---------ANAC58    <-----------GT1 <---------ATHB12                                <---------ANAC46   <---------YAB1 --ZmHOX2a(2)                                 --------->ALFIN1    <--------HAHB4   <---------YAB1 ==HOX2a_HOX2a                    <---------MYB46(3)              <---------ICU4  --------->ARR11(3) --->AGP1                 --------->AHL20(1)  <---------AtMYB61  <---------YAB1   <---------ARR11(3) ->MYB59        ------->TEIL <---------AHL20(2)<---------ANAC46  --------->ICU4  --------->YAB1 -----   ccaatgatttctataatgtatgcataaatatgttattggttaagagatgtggtgtgtttatatcggtattattaccgttacaaatatcattgtcttaaaa  26677700                     ----------->RAV1(1)                  --------->TCP16(1)                  --------->PCF2                  --------->PCF5                  <---------TCP20                  <---------TCP15(1)                --------->WRKY38(1)                                         --------->WRKY12                <---------ZAT18                                             ----------->HVH21                --------->ZAT18               <---------AHL20(2)      --------->HSFB2a(2)             --------->ALFIN1                 --------->AHL20(2)  <----------DOF2    ----------->GT1 --------->MYB46(3)     <---------GLK1(2)   <---------ALFIN1      <----------DOF2  ---------->DOF2<---------TCP16(2)      ----------->ARR10    ------>ZmHOX2a(2)  <----------DOF2   <- ---->YAB1   <---------ANAC46         <-----------HVH21 --------->TOE2(3) <---------At4g35610  ------   ataacaaagaaaaatgtgtggacccacaatgaaatcagacggtcagattttaatcaaacgttgatccactttctagggctgacctttctttcttctcctc  26677800                                             <---------MYB52(1)                                          <------NtERF2                                         --------->LBD16                                        --------->ANAC46                            --------->GLK1(2)                                       <---------LBD16                              <-----------ARR10                                      ------>ZmHOX2a(2)                             <---------ARR14(2)                                      ==================================HOX2a_HOX2a --------->ARR14(2)                                     <------ZmHOX2a(2)                             --------->GLK1(1)                                    --------->ARR14(2)                         --------->ANAC58                                    <---------ARR14(2)                         --------->RAP2.6(2)                                    <---------ARR11(3)                         --------->ANAC58                                    --------->ARR11(3)                     ----------->HVH21--------- <-----------GT1          ---------->DOF2------>NtERF2                 <---------ZAT14   <---------AtLEC2 ---------DOF2            *TSS     <---------GLK1(1)             ------>ZmHOX2a(1) <---------CCA1(2) >ZmHOX2a(1)      --------->HSFB2a(2)===================================HOX2a_HOX2a<---------GLK1(1)   tctttacctctctctctcttctaaaatccaaagcttgagatcccgccgtttctctctggtcatcatcctcttcttcagtgaccgcaaatctgcatgtttg  26677900                               --------->CCA1(2)                               <------ZmHOX2a(2)               --------->YAB1                              --------->ARR11(3)          <---------ZAT14                              <---------AGP1              --------->ZAT18                              --------->AGP1              --------->ZAT14                              <---------ARR11(3)        ------->MYC4                            ----------->ARR10           <-------MYC3                         <-------GAMYB                  <-------MYC2                   ------>NtERF2                        ------->MYC2                 <---------LBD16                 <---------ANAC46               --------->DEAR3(1)                <---------ANAC58       <---------YAB1   ----------->GT1     <---------ICU4<---------ZAT18  <---------MYB46(3)<------NtERF2         <---------TOE2(3)   ----------->HVH21                ------ <---------AtMYB61 --------->LBD16        <---------YAB1------->MYC3                           ------ >ATHB12      --------->DEAR3(2)------>ZmHOX2a(2)<---------ANAC58       --------->WOX13(1)     ------   gcagtggtttttatagaccgccgggagggttagatctaggcgttaagaatggcttacatgtgcactgatagtggcaatctaatggctattgctcaacaag  26678000                                      --------->REM1(1)                                    ----------->RAV1(1)                               --------->At4g35610                               <---------At4g35610                           ----------->RAV1(1)          --------->At4g35610 ------->GAMYB     <---------ARR11(3)       ------>ZmHOX2a(1) --->ANAC46               --------->MYB46(3)<---------ICU4              --------->TOE2(3) --->ANAC58    ----------->RAV1(1)--------->At4g35610   <---------GLK1(2)<----------DOF2 --->ANAC58  --------->At4g35610 --------->RAP2.6(2)    --------->ARR11(3)   ---------->ID1   tcatcaaacagaagcagcaacaagaacaacaacagcagcaacatcatcaagaccatcagatttttggtattaatcctttgtctcttaacccatggcccaa  26678100                                                                --------->HSFC1(2)                                                                --------->HSFB2a(1)                                                                <---------HSFB2a(1)                                                              <------NtERF2                                                             --------->LBD16                                                            <---------ANAC46                                                            <---------DEAR3(1)                                                           <---------------------WRI1                                                           <---------LBD16                                                           --------->ATERF1(1)                                                           <---------At4g35610                                                           --------->At4g35610                                                           <---------ABI4(1)                                                           <------NtERF2                                                          <---------ORA47(2)                                                          <---------RAP2.3(1)                                                          <---------ERF1                                                          <---------RRTF1(1)                                                          <---------ATERF1(1)                                                          ------>NtERF2                                                          <---------RAP2.6(1)                                                          <---------DEAR4(2)                                                         <---------RRTF1(2)                                                         <---------RRTF1(3)                                                         --------->ATERF1(2)                                                         <---------RAP2.3(2)                                                         --------->DEAR3(1)       <----------DOF2                                     ------>NtERF2       <---------ATERF1(2)      <---------GLK1(1)                                    ----------->HVH21    <---------DEAR3(1)      <---------ANAC58                                    <---------ETT(1)     <---------RAP2.3(3)     <---------ANAC58                                    --------->ANAC46    --------->ATERF1(1)   ------>ZmHOX2a(1)                                   --------->HSFB2a(2)  <---------ABI4(1)  =========================HOX2a_HOX2a                              <---------DAG2          <---------ATERF1(2)  <------ZmHOX2a(2)                              <----------DOF2        --------->DEAR3(2)   <---------ARR14(2)                         <-------TEIL<---------ALFIN1<---------LBD16      --------->ARR11(3)                        --------->ARR14(2)          <---------DOF5.7(2)   --------->ARR14(2)   >>>>>>                        <---------ARR14(2)          --------->MYB52(1)  --------->MYB46(3)   ------>ZmHOX2a(1)                 <----------DOF2   <---------HSFB2a(2)--------->ATERF1(2)------->GAMYB <---------DAG2          --------->ALFIN1<---------RAP2.6(2)       <---------At5g28300 <---------ATHB12    <--------     <---------LBD16 <---------TOE1(3)             <-----------GT1--------->GLK1(2)    <----------DOF2   tacttccctcgggtttgggctttcaggttcggcttttcccgacccgtttcaagttaccggcggcggagattccaacgatcctggctttccttttcctaac  26678200                                                                      --------->ATERF1(1)                                                                     <---------ERF1                                                                     <---------DEAR4(2)                                                                     ------>NtERF2                                                                    <---------RAP2.3(3)                                                                    <---------ANAC46                                                                    <---------DEAR3(1)                                                                    --------->DEAR3(1)                                                                   <------NtERF2                                                                   <---------At4g35610                                                                   --------->RAP2.3(1)                                                                   --------->DREB2C(1)                                                                   --------->At4g35610                                                                   --------->ATERF1(1)                                                                   <---------ABI4(1)                                                                   --------->DEAR4(2)                                                                  <---------ERF1                                                                  <---------RAP2.6(1)                                                                  <---------ATERF1(1)                                                                  <---------DEAR4(2)                                                                  ------>NtERF2                                                                  <---------RRTF1(1)                                                                  <---------RAP2.3(1)                                    <---------TOE2(3)             <---------ORA47(2)                               <------MYB46(1)                   <---------RAP2.3(3)                               <---------DEAR3(2)                --------->DEAR3(1)                               <------MYB83                      <---------RRTF1(3)                              <---------MYB46(3)                 <---------DEAR3(1)                              --------->ABI4(2)                  <---------RRTF1(2)                             <---------MYB55(1)                  --------->ATERF1(2)                             <---------ANAC46                    <---------RAP2.3(2)                             --------->ALFIN1                    <---------ATERF1(2)                            <-------GAMYB                       <---------ABI4(1)                            --------->ATERF1(1)                 --------->ATERF1(1)                            <------NtERF2                      <---------ATERF1(1)                     --------->MYB52(1)                       --------->DEAR3(1)                    --------->AtMYB61                        --------->MYB46(3)                    ------->GAMYB  <-----------RAV1(2)       --------->ATERF1(1)                   <---------MYB52(2)                      --------->TCP16(1)                   --------->MYB46(3)                      --------->TCP20                   <---------MYB55(2)                      --------->ARR14(2)                --------->MYB46(3)<-------TEIL             <---------ARR14(2)            ------>NtERF2  <---------DEAR3(2)           --------->ALFIN1           --------->bZIP60(2)--------->MYB55(2)       <------NtERF2<---------RAP2.3(2)           --------->ANAC46--------->MYB55(2)          <-------GAMYB--------->ATERF1(2)           --------->O2   --------->ALFIN1             =========================================MYC_MYB           --------->ANAC58<---------MYB46(3)         <---------DEAR3(2)              ===============           --------->ANAC58<---------DEAR4(2)         <---------MYB46(3)              <---------TGA1a      --------->AtMYB61--------->DEAR3(1)            <---------DEAR3(1)<---------ANAC46      --------->DEAR3(1)  <---------DEAR3(1)        <---------ABI4(1)<---------RAP2.3(1)      <---------ALFIN1 <---------ATERF1(2)         <---------RAP2.3(1)<------NtERF2   <---------O2     --------->MYB46(3)--------->ATERF1(2)        <---------DEAR3(1)<---------ATERF1(2)    <---------MYB46(3)   --------->AtMYB61<---------ALFIN1<---------TOE1(3)<---------DREB2C(2)              --------->TGA1a >>>MYB98<---------ALFIN1<---------ABI4(1)<---------At4g35610--------->DEAR3(2)    ----------->HVH21 -MYB59  --------->AtMYB61<---------DREB2C(2)     <---------RAP2.6(2)<---------ATERF1(1)  --------->ALFIN1   ttagaccaccaccacgccacaaccaccggcggtgggttcaggttatctgatttcggcggtggaaccggcggcggcgagtttgagtccgacgagtggatgg  26678300  Previous    Next  AGI:  At5g66770.1    Description:  scarecrow transcription factor family protein. similar to scarecrow-like transcription factor 7 (SCL7) [Arabidopsis thaliana] (TAIR:AT3G50650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22856.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 26677826    to: 26680120    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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