Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  <---------YAB1                                                                    --------->AHL20(2)                                                                    <---------AHL20(2)                        --------->YAB1                             <---------AHL20(2)                      <---------WOX13(1)                       <---------AHL20(2)  <---------YAB1                   <---------YAB1                            <----------DOF2   <---------GLK1(2)                  <---------TOE2(3)                       <---------AHL20(2) --------->ICU4                <---------AHL20(2)                     --------->AHL20(1)    <---------YAB1               <---------AHL20(2)                      <---------ARR11(3)  --------->YAB1            <---------AHL20(2)                         --------->ARR11(3)  <---------ICU4            --------->AHL20(2)                         <---------AHL20(1) <---------YAB1          <---------AHL20(2)          ----------->GT1 <---------AHL20(2)--------->YAB1   aaactttcttatatttttttaatgaatgatagttagtaagtggctaaatgctataaatattttcttttatttatttatcatgattcttattggatgttgt  26605400                                                           <---------DOF5.7(2)                                                       --------->ANAC58                            <-                                                  ----------->HVH21                       <---------AHL20(2)                                                --------->At4g35610                      --------->YAB1                            <-------TEIL        <---------At4g35610                      <---------AHL20(2)                          <---------ARR14(2)    --------->ZAT2                           --------->AHL20(2)                      <---------WOX13(1)      <------ZmHOX2a(1)                   <-----------GT1  --  --------->ANAC58  --------->ATHB12        <---------TOE2(3)               ----------->GT1       <--  --------->ANAC58 <---------AHL20(2)   <----------DOF2--------->ANAC58    ----------->GT1--------->AHL20(2)   tgacaagaaaactagtactatttgattggatacagtatttcgcattaaggagctgaaacggcaacgtttcaagagggagggaaataactaattaaaatcg  26605500                                                    --------->ALFIN1                                                   ------->MYC3                                                   <-------MYC3                                                   ------->PIF4                                                   <-------MYC2                                                   ------->MYC2                                                   <-------MYC4                                                   ------->MYC4                                                   <-------PIF4                                                   <-------PIF5                                                   ------->PIF5                                                  <---------ANAC55(2)                                                  <---------ANAC46                                                  --------->O2                                                  --------->ANAC55(2)                                                  ==================================bZIP_DOF                                                  <---------TGA1a                                                  ==================================bZIP_DOF                                                  --------->TGA1a                                --------->ANAC58  <---------O2                  --------->ANAC58               ------------>OsbHLH66                      ---------                  <---------ANAC55(2)           <------------OsbHLH66          <----------DOF2           ------------>CBF     --------->ANAC58<---------ALFIN1         <----------DOF2   ----------      ----------->GT1       ------>NtERF2      <------NtERF2      <---------At4g35610 <--------------     ----------->GT1 --------->ARR14(2)       <---------RAP2.3(1) <---------ZAT2      ----------->RAV1(1)  ---------->DOF2 --------->ANAC46           <---------RAP2.3(2)  --------->ZAT2      --------------- --------HSFB2a(2)--------->ANAC58          <---------LBD16       --------->At4g35610---------------- ------->HSFB2a(2)--------->ANAC55(2)    <---------ANAC58         ================================RAV ---------------AGL1 <---------ARR14(2)  <---------ANAC58         ----------->RAV1(2)----------------   tctcgaaagggtaaacaattacgaaactgccaccaagaaatgtgcttgcggcacgtgtgcaaaaaaacagctggtctttcgctttggaccacaaaaagta  26605600 <---------ANAC58 <---------ANAC58 --------->ALFIN1             --------->ANAC58 >DAG2                        --------->ANAC58 >DOF2                        --------->ANAC46 -AGL15                     <---------ALFIN1                                                      --- >AGL15                    <---------REM1(2)              <----------DOF2                       ----- ->AGL2                   <---------ALFIN1          <----------DOF2          ------------>CBF<------- ->AGL3          <----------DOF2                <----------DOF2         ---------->DOF2      --------   agtgtgtgtgtgtgtttctctttcttctccacacgccttgcattctactactttctttttcttttcttctctcaaaaagaccaattcaacacagtagctg  26605700                                                    --------------->AGL15                                                    <---------------AGL15                                                   ----------------->AG                                                   <-----------------AGL2                                                   ----------------->AGL1                                                   ----------------->AGL3                                                   <-----------------AGL1                                                   <-----------------AG                             <---------ANAC46   <----------DOF2                   --------->HSFC1(1)          --------->HSFC1(2)                   <---------HSFB2a(2)         <---------HSFB2a(1)                   --------->HSFB2a(2)         --------->HSFB2a(1)              <---------HSFB2a(1)              <---------HSFC1(2)       <----------DOF2   --------->GLK1(2)--------->HSFB2a(2)      --------->GLK1(2) --------->CBF--------->HSFB2a(1)         <---------HSFB2a(2)     <---------GLK1(2) ---->At4g35610    <---------HSFC1(1)<---------ARR11(3)       ---------->DOF2 --At4g35610  --------->HSFC1(2)     <---------ARR14(3)     <------ZmHOX2a(1) ->At4g35610  <---------HSFC1(2)     --------->ARR11(3)   <---------TOE2(3)             --------->REM1(1)   ctcaatggtctttcgaaacttctcgaaattctcgtggaagacctcgcgaactttccacttgaggaaaagaatcggaaaccggtttgggctacaacgagac  26605800                                                                         <---------ICU4                                                                      -------->HAHB4                                                                      --------->ATHB51                                                                      --------->YAB1                                                                      <---------ICU4                                                                      <--------ATHB1                                                                      <--------HAHB4                                                                     <---------YAB1                                                                     <---------ATHB51                                                                     --------->ICU4                                                                     --------->AHL20(2)                              ----------->TGA1                     --------->YAB1                            --------->At4g35610                   <---------AHL20(2)                            <---------At4g35610                  --------->AHL20(2)                            ----------->RAV1(2)                  <---------AHL20(2)              ----               <---------YAB1 ----------->HVH21         --------->WRKY38(1)                    <-----             <---------At4g35610                 <--------P <----------DOF2           <-----------HVH21 ---------->DOF2     <---------YAB1        --------->ALFIN1 <---------DAG2  --------->TOE2(3)<-------   ccaaaaagacatggcctctgattactattcatctgacgatgaagggtttgggtaagtgttgactttttttaataattatctcaatttcggtcgagtcgtt  26605900                 --------->ANAC58             ------>NtERF2             <---------RAP2.3(1)             <<<<<<<<<AtERF-3--------->KAN4(2)                   <---------bZIP60(1)            <---------DEAR3(1)                                   --------->bZIP60(1)            <---------RAP2.6(2)                                  <---------ANAC46           ---------            <---------RAP2.3(3)                       --------->YAB1                 --------->At4g35610            <---------RAP2.3(2)                       --------->ATHB12               <---------ZAT14         ----------->HVH21  <---------KAN4(1)         <---------ICU4                 --------->ZAT14         --------->WRKY12   --------->KAN4(1)         <--------HAHB4                 --------->ZAT18       <----------DOF2     <---------KAN4(2)         --------->ICU4<------NtERF2 <---------ARR14(2)    <-----------GT1       --------->YAB1  --------->DAG2<---------YAB1           --------->ARR14(2)    <---------AHL20(2)---------->DOF2   ---------->DOF2--------->TOE2(3)      <---------ANAC58 ----->MYB52(2)  --------->ANAC58 ------>ZmHOX2a(1)  <---------ATHB12      --------->ARR14(2) ----MYB52(1)<<<<<<<<<AtERF-4--------->YAB1   <-------TEIL <---------TOE2(3)  <---------ANAC58 --MYB46(3)--------->RAP2.6(3)   --------->TOE2(3) --------->WOX13(1)      <---------ARR14(2)   <----   agttattaactttgacggctcggaaaaagaataatcctttgtaaaaggttcatccatcattaatgtgtcgtcgttcagaaccgtgtctgcacaaaaattg  26606000                                   <---------YAB1                                  <------ZmHOX2a(2)                                 <---------ICU4                            <---------TOE1(2)                                 --------->YAB1                            <---------TOE2(3)                                 <--------HAHB4                            <---------TOE2(2)       <-                          <----------DOF2                           <-------TEIL  <---------ARR11(3)<                          <---------DAG2                    --------->At4g35610   --------->ARR11(3)< >DAG2          ------->MYC3    <---------YAB1              <---------At4g35610 ----------->ARR10  -- -----LBD16     <-------MYC3   <-----------GT1         <----------DOF2     <---------TOE1(3)  <------   gggaattttagaaaaacacatgtgaacactttttatcattatagtctctgcattctactttcagctcaaattcgtccaaggttagatcatgtcccgtttc  26606100    <-----------GT1 --------ARR11(3)                                                             <-------GAMYB ---------CCA1(1)               <----------DOF2     <---------At4g35610      <---------MYB46(3) ---------RVE1(1)        <---------GLK1(2)          --------->At4g35610      --------->MYB111(2) ------->ARR11(3)<---------ETT(2)                   --------->ZAT2          <--------P    <----------DOF2 -----HVH21      --------->ETT(2)   <----------DOF2 <---------ZAT2      <-----------RAV1(2)   agatattttcaatcttctgtagacatagattcttctttcttttgtttcatactaagctgtgtttcatacctgtatcaggttgttgttgttgtctttgtgt  26606200                                             ======================HOX2a_HOX2a                                             ------>ZmHOX2a(2)                                           --------->ARR11(3)           --------->ZAT14                                           <---------ARR11(3)           <---------ZAT14        <----------DOF2                  <---------YAB1                 <---------ZAT18 <---------ANAC58                      <---------At4g35610           <---------ANAC46          <----- <---------ANAC46                 --------->At4g35610       ------>ZmHOX2a(1)  --------->TOE2(3) <---------ANAC58                 <---------At4g35610      <---------MYB59  <----------DOF2  <-------   ctgtcttgttctttatctaatgtcgatgtcttagtttgctgagatgatcgtcaacatgtttcctaactatgctgtgaactttcttaacctagttttcgtt  26606300  Previous    Next  AGI:  At5g66620.1    Description:  LIM domain-containing protein. similar to LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G66630.1); similar to hypothetical protein OsJ_019532 [Oryza sativa (japonica cultivar-group)] (GB:EAZ36049.1); similar to Os06g0182500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056985.1); similar to hypothetical protein OsI_021156 [Oryza sativa (indica cultivar-group)] (GB:EAY99923.1); contains InterPro domain Ubiquitin interacting motif (InterPro:IPR003903); contains InterPro domain Zinc finger, LIM-type; (InterPro:IPR001781) Range:  from: 26605811    to: 26609232    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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