Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->YAB1                                                                               --------->TOE2(3)                                                                              ----------->GT1                                                                         ----------->HVH21                                                     <-----------GT1   <---------ANAC46                                       ------>ZmHOX2a(1)               <------MYB83<---------YAB1                                      --------->TOE2(3)                <---------ANAC55(2)        --------->AHL20(2)   <-------MYC3           <-----------GT1    ----------->GT1        <---------AHL20(2)   ------->MYC3   --------->TOE2(3)          <------MYB46(1)<---------CCA1(2)       <---------ATHB12  --------->ZAT14   --------->ANAC46           --------->MYB46(2) >>>>>>>>>RAP2.2     --------->WOX13(1)  <---------ZAT18   <----------ID1             --------->MYB59<---------AHL20(2)   aaaacaccaattaatgtctccttgcagtccacatgggcttcctaaacgtcaaattttcccaattttcagaattaggtgaaacgttattatatctaaaaaa  26581000                                           <----------DOF2                                         ------>ZmHOX2a(1)                                   <---------At4g35610                                   --------->At4g35610                                   --------->ZAT2                                   --------->HSFC1(2)                                   <---------HSFB2a(1)                                   --------->HSFB2a(1)                            --------->AHL20(2)                                   <---------HSFC1(2)                  <---------ATHB12                              --------->DAG2                --------->ATHB12      --------->YAB1 ----   ----------->GT1           ---------->DOF2               <---------YAB1 ------->TEIL--------->AHL20(2)   cagtctagataatatgtctgccacttaaacaaaaagcagcttcctcttttgtttagttttgatgatttatcaaatgaatatcaataaaaaaaatacgaat  26581100          <---------AHL20(1)       --------->AHL20(2)      <---------AHL20(2)      --------->AHL20(2)                                    --------->YAB1     <---------ATHB12                                       ----------->GT1     --------->AHL20(2)                             ---------->DOF2   --------->WOX13(1)                            --------->AHL20(2)                  ---------->DOF2 ----->AHL20(2)                                 --------->AHL20(2)      ---------->DOF2 --------->At4g35610   aaaatcaattaatatactttgtaatatcaattgaaacaatgcattacacattaaaaaagaaatagtaacacataaaaagaaacagtggaaagcagaaaac  26581200            --------->AHL20(1)                  --------->ATHB12            <---------ARR11(3)         <---------WOX13(1)       <---------ANAC46              -------->HAHB4     <---------ANAC46                --------->ATHB12                     ----------->GT1     --------->ALFIN1               <---------ATHB12                  ---------->DOF2   <---------ANAC58             <---------AHL20(2)            <---------ANAC58                    <--   <---------ANAC46             --------->AHL20(2)            <---------ANAC58                    <--   <---------ANAC58 ---------->DOF2 --------->ICU4          <-----------GT1     <---------AHL20(2)<--   gagaggggtgtgtatatattactaaagaattagtttaaatgattaacaaatgagtgggatttttgcttctcccaaagcgtaatttatctgaaaatgtgtc  26581300                                                                                                 <---                                                                                                <----                                                                                             ------>ZmHOX2a(2)                                                             <---------TOE2(3)              <------ZmHOX2a(2)                                                            ---------->DOF2                --------->ARR14(2)                                                       <---------YAB1                      --------->ARR11(3)                                                      <---------AHL20(2)                   <---------ARR11(3)                    <---------ANAC58                <---------YAB1     ---------->DOF2     <---------ARR14(3)                    <---------ANAC58           <----------DOF2  --------->AHL20(2)         <---------ARR14(2)          <---------MYB46(3)             --------->TOE2(3) --------->AHL20(2)              --------->ARR14(3) -------ANAC58    --------->GLK1(2)      --------->TOE1(3) <---------AHL20(2)             <---------GLK1(1) -------ANAC58   <---------GLK1(2)      <---------ICU4--------->AHL20(2)        <------ZmHOX2a(2)<--- -------ANAC46 ----------->ARR10   <---------MYB52(2)--------->YAB1 --------->AHL20(2)    --------->GLK1(1)   tcgtgttgagagtagttgagattcttgctgttctccaactaaacattaacttttattaaaattaaagaaaataaaaagatggatcaaaaacgagatcccc  26581400               <---------TOE2(3)      <---------ARR14(2)      --------->ARR14(2)     <---------GLK1(1)     --------->GLK1(1)       <----------DOF2            <---------TOE2(3) ------DAG2   --------->YAB1<---------ANAC58       --------->ATHB12  <---------ANAC58             <-- -----DAG2--------->LBD16   <---------ANAC58      <---------YAB1     <---------ANAC58             --- -------DOF2  *TSS      <----------DOF2    <----------DOF2<------ZmHOX2a(1)<----------DOF2        <--   tttttcgatatccgaataatgtttttctttgcttttaatgtgtctctttcttatgatttaggattccaattccttccctttccccttcttgttctctcca  26581500                                                                                                <----                                                                                               <-----                                                                                               <-----                                                                                              -------                                                                                              <------                                                  <---------WOX13(1)                          -------            ---------->DOF2                      <---------ANAC58                             <------       <----------DOF2                           <---------ANAC58                             <------     ------>ZmHOX2a(1)                       <---------ANAC58                        <---------------AGL15 <-----------GT1                             <---------ANAC58                        --------------->AGL15 -------GLK1(2)                           ------>ZmHOX2a(1)                         ----------------- ------>ARR14(2)                       <-----------GT1    <---------AHL20(2)        <---------------- -------ARR14(2)                      <-----------GT1 <---------RVE1(1)     <---------MYB46(3)<------   tattctcctctttagaaagagatagagagagtcttgtttttttcctgtcttgagtgatatttttttcagagccctgagttgttgtctccattaatggcgt  26581600                                                  --------->TOE2(3)                                                  --------->TOE1(3)   --------->GLK1(1)                         <---------ANAC55(2) --NtERF2                                  --------->ZAT6           <---------AHL20(2) ------TGA1                        <------ZmHOX2a(2)             <---------AHL20(1) ------HVH21                      <---------ARR14(2)             --------->AHL20(2) -->TGA2(1)                       <---------ARR11(3)             <---------AHL20(2) ---ANAC58                        --------->ARR14(2)          --------->AHL20(2) -->bZIP60(1)                     --------->ARR11(3)    --------->YAB1 ---ANAC46                      ----------->ARR10 --------->YAB1 --------->AHL20(1) ---ANAC58              --------->YAB1--------->ZAT2   --------->ZAT6 <---------AHL20(2) >AGL3  ------->TEIL   <---------ATHB12<---------MYB52(2)     --------->YAB1      ---------->DOF2 -AGL3  -------->P    --------->ANAC58<---------At4g35610  --------->YAB1      <---------ANAC46 ---bZIP60(1)         --------->ANAC58--------->At4g35610 <---------ATHB51<-----------RAV1(1)<-------   cagagaaatctacctccaagggccaagcatggtgaagatcagctaacacttatcttaacaataataatattttaaaatgttgcctaaagaaattttctca  26581700                       <---------ANAC58                       <---------ANAC46                       --------->YAB1           ---------->ID1          <-----------------AGL1    <---------------AtSPL3                         ----------->HVH21  <----------DOF2      <---------ANAC58 --------->SPL7                           <---------bZIP60(1) ----GT1  <-----------GT1     <-----------RAV1(2)        ----------->HVH21       --------->bZIP60(1)   tttccttttttttttcgttttggtatcgtgatgcaggttttgtacgactgggttacctagtgacattgaaatcgaagttgatgacatgacattccatctc  26581800                                                                                          <----------              ---------->DOF2         <----------DOF2                              <---------MYB46(3)      <---------ANAC46        ---------->ID1                                    <-----------RAV1(1)      <---------ANAC58   --------->ARR11(3)                                 --------->CCA1(2)   <----      <---------ANAC58   --------->ARR14(2)                                <---------ARR14(2)   <----     <-------TEIL        <---------ARR11(3)                <----------DOF2 <---------ARR11(3)  <----- --------->DAG2          <---------ARR14(2)         <---------MYB52(1)     --------->ARR14(2)  <-----   cataaggtgcgttcacaaaagcctgaagatttgtcttcttctttggcactctctgttttttctttgattactcacaagatttgtgttgttgtctgtggct  26581900  Previous    Next  AGI:  At5g66558.1    Description:  other RNA Range:  from: 26581190    to: 26584000    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g66560.1    Description:  phototropic-responsive NPH3 family protein. similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT3G50840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41614.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61829.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210) Range:  from: 26581414    to: 26584079    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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