Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    --------->ARR14(2)                                                                                  <---------ARR14(2)                                                                                  --------->GLK1(2)                                                                               --------->LBD16                                                                              --------->HSFB2a(2)                                                                              <---------HSFB2a(2)                                                                             ------>ZmHOX2a(2)                                                                            <------ZmHOX2a(2)                                                                            =================HOX2a_HOX2a                                                                        --------->ANAC58                                                                        --------->ANAC55(2)                                                                        --------->ANAC55(1)                                                                        --------->ANAC46                                           ------->GAMYB                --------->ANAC58--------->ANAC46                                      <------NtERF2                    <---------LBD16------>ZmHOX2a(1)                                     ------>NtERF2                    <-----------GT1--------->TOE1(2)                  --------->ICU4   <------NtERF2   <------ZmHOX2a(2)<-----------HVH21--------->TOE2(2)           <---------LBD16         --------->ATERF1(1)       <---------WRKY18(1) <---------GLK1(2)           <---------HSFB2a(2)     --------->RAP2.3(1)      ----------->HVH21================HOX2a_HOX2a   --------->ANAC46     <-----------GT1--------->MYB46(3) <---------ANAC58 --------->ARR14(2) --->DOF2  --------->HSFB2a(2)    <---------ATERF1(1)     <---------ANAC58 <---------ARR14(2)   gacatacgctgttctcggaaatgatttttcccttggaggcgacaaccgagccgatcaagtgcttgaccagtttcacggatccagaatcctacgctgtaga  26568700                                          --------->ANAC58                                          --------->ANAC58                                          <---------TGA1a                                          --------->ANAC46                                          --------->O2                                            <--                                          --------->TGA1a           <---------ATHB12          -------                                          ==============================================bZIP_DOF-----                                          <---------O2          <---------YAB1                <------NtERF2                                      <---------ALFIN1   <---------ANAC46      --------->DAG2--------                                 <<<<<<<<<TBF1           <---------ANAC58     --------->DAG2 <-------     >>>>>>>>>>>>>>>>>LFY     <<<<<<<<<TBF1      <------ZmHOX2a(2)--------->WOX13(1)       <---------LBD16 <----------DOF2           <<<<<<<<<TBF1--------->ANAC46 <---------ANAC58    ---------->DOF2---------   atgctttacccattgttcccatcgtgttcttcttcttcttccacacgagagatcgatttgcgttttatcaatgaaatcgaaaaggggtttttcgccggag  26568800                                                                                   <---------LBD16                                                                                 <-----------GT1                                                                               <---------YAB1   <------ZmHOX2a(1)     ----------->HVH21               ------------>CBF   <---------MYB52(1) ---------RAV1(2)      <----------DOF2                  *TSS               <-------GAMYB -->ATERF1(1)    <---------ZAT14               <---------MYB46(3)         ----------->GT1 ->NtERF2        --------->ZAT14               <------MYB83           <---------SPL7               <- ->LBD16 <------ZmHOX2a(1)                     <------MYB46(1)        ----------->HVH21            == --ATERF1(1)     <---------ZAT18           <-----------RAV1(1)        <---------DEAR3(2)<-------TEIL< >DEAR3(1)       --------->ZAT18           <---------MYB46(3)      <-----------HVH21 --------->LBD16<   ccagaggaagaggagagagtgcagtctttgacgactcatccccatttgttggttttgtgctcaattttcggtcggaccgttattatccggttcatgttat  26568900                                                                     ---------->ID1                                                                 <---------DAG2                                                            <-----------TGA1                                                           --------->O2                                                           --------->ANAC55(1)                                                           --------->bZIP60(1)                                                           <---------bZIP60(1)                                                           <---------O2                                                           =================bZIP_DOF                                                           =================bZIP_DOF                                                           --------->TGA1a                                                           <<<<<<<<<<HY5<----------DOF2           <------MYB83                                    <---------ANAC55(2)           ----------->GT1                                 --------->ANAC55(2)                 <-----           <------MYB46(1)                                 --------->ANAC46                    ------         <---------MYB52(1)                                --------->ANAC58                    ------        <-------GAMYB                       ----------->GT1--------->ANAC58               --------->ANAC58       <---------MYB46(3)                   --------->YAB1 --------->bZIP60(2)            --------->ANAC46       <-----------RAV1(1)                 <---------TOE2(3)<-----------HVH21           --------->MYB52(1)     <---------At4g35610                   <---------YAB1  <---------TGA1a            --------->MYB46(3)   <--------P                        <---------YAB1       ------>NtERF2 ------>ZmHOX2a(1) --------->ANAC58 ----------RAV1(2)                 ----------->GT1        <-----------STF1            <---------MYB52(2) ==================RAV         <---------AHL20(2)--------->ICU4  <----------DOF2 --------->HSFB2a(2) ---------TOE2(3)       ----------->GT1 --------->ICU4   <---------ALFIN1        <---------HSFB2a(2)< ---------TOE1(3)     <------ZmHOX2a(1) <---------YAB1--------->ANAC46 --------------------->WRI1<---   ttcaggttgctgttggtaaaattaggaggtaaatttatggtgattatggtaattcttcgccacgtcactttatccttttaagtctcgaacaaacggcaca  26569000          <---------At4g35610          --------->At4g35610        --------->ZAT18        <---------ZAT14       <------NtERF2      <---------SPL7                                      <---------DAG2     <---------ANAC58                                     --------->TOE1(3)     <---------ANAC58                                   ------->TEIL     <---------ANAC46                         --------->MYB46(3) ----ALFIN1                                  -------->P<---------ARR14(2) --->ANAC58                       --------->YAB1---------->DOF2 --->ANAC58             --------->GLK1(2)   --------->WOX13(1)<---------CCA1(2) ----------DOF2      <---------TOE2(3)   --------->TOE2(3)--------->TOE2(3) ------ALFIN1    <------------CBF<---------YAB1------->GAMYB<---------CCA1(2)      <----------DOF2---   cactttggcgtccactgagaattgagaatatagttatcatcaacatcaaccaaagaagaaccttatctctcaagaggtctctctgttttatcgaatgaac  26569100            ------>ZmHOX2a(2)            =================HOX2a_HOX2a                                                         ----          <---------ARR11(3)                                ---------->ARF1                      <---          --------->ARR11(3)                            <---------ANAC58                    ---------     ------->TEIL                    <---------GLK1(2)  <---------ANAC58     --------->ANAC58    <---  <---------YAB1          --------->ATHB12            --------->ARR11(3)     --------->ANAC58   -----  <---------ATHB12       <---------YAB1               <---------ARR11(3)   ---------->DOF2  --------- --------->CBF        ------>ZmHOX2a(1)      --------->ANAC46    --------->LBD16      <---------ARR14(2)   tacaatgaatgtgatctcatgctccttctcattggaacataatctctacgagacaatgtcttgtctccagagatgctcaaagcaagaagaactgaagcaa  26569200      --------->ANAC58      --------->ANAC58  --------->ANAC58  --------->ANAC58  --------->ANAC46                --------->ARR14(2) ----->ARR14(2)                   <---------GLK1(2) --------ARR10                    <---------ARR14(2)      <----------DOF2 >ANAC58               <---------ANAC58        --------->YAB1                                    <--- ------ARR14(2)        <---------ANAC46       <---------ATHB12         --------->ARR14(2)     <------ ---->GLK1(1)          <---------ANAC58     --------->WOX13(1)<----------DOF2             <----------DOF2 >ANAC58   --------->At4g35610   <------ZmHOX2a(1)---------->DOF2      <---------ARR14(2) <---------DAG2   atccacgctcgcatgctgaaaactggcttgatgcaggattcttatgcaatcacaaagtttctttctttctgcatttcttcaacgtcttccgactttttgc  26569300                                                          <---------ICU4                                                          --------->YAB1                                                  <---------ARR14(2)                                               --------->HSFB2a(2)                                           <---------ANAC58                                           <---------ANAC46                                           <---------ANAC58                                        <----------DOF2   -------->HAHB4                                     <---------RVE1(1)   --------->ICU4                   <---------ANAC46 <---------GLK1(2)<---------MYB59                   --------->TOE1(2)                  <---------LBD16   --------->ARR14(2)   <---------ATHB12            ------->TEIL        <---------GLK1(2)           <---------ARR14(2) ------>MYB46(1)        <-----------RAV1(2) ------DAG2     ----------->HVH21   <---------ARR11(3) ------>MYB83     <---------ANAC58 -----GT1   <---------YAB1   ------>ZmHOX2a(2) <---------HSFB2a(2)      <---------ANAC58   cttatgcccagattgtgtttgacgggtttgatcgaccagatactttcttgtggaacctaatgatcagagggttctcgtgctcagacgaacccgagaggtc  26569400                                                           <-----------ARR10                                                        <---------ANAC58            <---------ARR14(2)                                               <---------ARR14(2)      <---------ANAC58                                            <---------ANAC46           <---------ANAC58                                          <---------ANAC46<---------CCA1(2)         --------->ARR14(2)                                    ------>ZmHOX2a(1)   <---------ANAC58        ------->TEIL                               <---------At4g35610 <----------DOF2 ---------->DOF2<---------MYB59     ------>ZmHOX2a(1)         <---------ZAT2  --------->ARR14(2)<---------HSFB2a(2)------>MYB46(1)   ----------->RAV1(2)         --------->At4g35610 <---------DAG2--------->HSFB2a(2)------>MYB83   tcttctcctgtatcaacgtatgctctgttcttcagctcctcataacgcgtatacttttccgtctcttctcaaagcttgttcgaacctatctgcatttgaa  26569500                         --------->ANAC58                         <---------ANAC55(2)              --------->ANAC58              --------->ANAC58                                                                      -              --------->ANAC46      --------->CCA1(2)              <---------YAB1                   -         --------->ARR14(2)        --------->ARR14(2)        <---------ARR14(2)                     -         <---------ARR14(2)        <---------ARR14(2)        --------->ARR14(2)         <---------ANAC46     ------->GAMYB       --------->ANAC55(2)             --------->At5g28300         ----------->HVH21    --------->ANAC46     --------->ANAC46               ----------->GT1--------->AHL20(2) --------->LBD16    --------->ANAC58     --------->ANAC58               <---------ANAC46            <-----------HVH21    --------->ANAC58  <------ZmHOX2a(2)               --------->ZAT14  <---------AHL20(2)<---------LBD16  --------->MYB52(1) --------->ARR11(3)               <---------ZAT14 <---------WOX13(1)<---------LBD16   gaaacaacgcaaattcacgcacagatcacgaaacttggatatgaaaatgatgtctatgcagtgaattctctgattaattcatatgctgtgaccgggaatt  26569600  Previous    Next  AGI:  At5g66510.1    Description:  GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3); carbonate dehydratase. similar to GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1), carbonate dehydratase [Arabidopsis thaliana] (TAIR:AT1G19580.1); similar to hypothetical protein [Thellungiella halophila] (GB:ABB45859.1); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004) Range:  from: 26566930    to: 26568856    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g66520.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G06540.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15415.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66581.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 26569105    to: 26570967    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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