Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             --------->YAB1                                                    ----------->RAV1(1)   <---------ATHB12                  <---------TOE1(2)             <---------ICU4          --------->WOX13(1)                  <---------TOE2(3)      --------->YAB1           --------->ANAC58                  <---------TOE1(3)     --------->ICU4            --------->ANAC58             ------       ------>ZmHOX2a(2)         ---------->DOF2--------->YAB1<------ZmHOX2a(1)               <------     <---------ARR11(3)      --------->YAB1    <---------ATHB12<---------ARR14(2)             -------     --------->ARR11(3)     <---------ATHB12 --------->WOX13(1)--------->ARR14(2)      <---------MYB59   aacatttgatcttaagctctaaggtttctaatcaaaaatgccataatcaatcatcaacataagaggaaacgcatcaatcaaaactatgacctgattccag  26568500                       ----------->HVH21                   --------->ARR14(2)                      --------->DEAR3(2)                   <---------ARR14(2)                      --------->MYB46(3)                  <------ZmHOX2a(1) --->LBD16<---------ICU4                         <---------ICU4                           <------ZmHOX2a(2) ---HSFB2a(2)       <---------ARR14(2)           --------->YAB1                          <---------ARR14(2) -->HSFB2a(2)       --------->ARR14(2)      --------->AHL20(2)           --------->MYB52(1)   -------   agaaatacacaaacatttcgaagacccgacgagtaatgaaacaaaaaaaaatcatcaccaggattcgaatggaactaagagaagacaaggcgatccaaaa  26568600                                                                                  --------->GLK1(2)                                                                                  --------->ARR14(2)                                                                                  <---------ARR14(2)                                                                               --------->LBD16                                                                              --------->HSFB2a(2)                                                                              <---------HSFB2a(2)                                                                             ------>ZmHOX2a(2)                                                                            <------ZmHOX2a(2)                                                                            =================HOX2a_HOX2a                                                                        --------->ANAC46                                                                        --------->ANAC55(2)                                                                        --------->ANAC58                                                                        --------->ANAC55(1)                                           ------->GAMYB                --------->ANAC58--------->ANAC46                                      <------NtERF2                    <---------LBD16------>ZmHOX2a(1)                                     ------>NtERF2                    <-----------GT1--------->TOE2(2)                  --------->ICU4   --------->ATERF1(1)       <---------WRKY18(1) <---------GLK1(2)           <---------LBD16         <------NtERF2   <------ZmHOX2a(2)<-----------HVH21--------->TOE1(2)           <---------HSFB2a(2)     --------->RAP2.3(1)      ----------->HVH21================HOX2a_HOX2a   --------->ANAC46     <-----------GT1--------->MYB46(3) <---------ANAC58 --------->ARR14(2) --->DOF2  --------->HSFB2a(2)    <---------ATERF1(1)     <---------ANAC58 <---------ARR14(2)   gacatacgctgttctcggaaatgatttttcccttggaggcgacaaccgagccgatcaagtgcttgaccagtttcacggatccagaatcctacgctgtaga  26568700                                          ==============================================bZIP_DOF                                          <---------TGA1a                                          --------->ANAC58                                          <---------O2                                          --------->O2                                            <--                                          --------->ANAC58                                      -----                                          --------->ANAC46          <---------ATHB12          <------NtERF2                                          --------->TGA1a       <---------YAB1                -------                                      <---------ALFIN1   <---------ANAC46      --------->DAG2--------                                 <<<<<<<<<TBF1           <---------ANAC58     --------->DAG2 <-------     >>>>>>>>>>>>>>>>>LFY     <<<<<<<<<TBF1      <------ZmHOX2a(2)--------->WOX13(1)       <---------LBD16 <----------DOF2           <<<<<<<<<TBF1--------->ANAC46 <---------ANAC58    ---------->DOF2---------   atgctttacccattgttcccatcgtgttcttcttcttcttccacacgagagatcgatttgcgttttatcaatgaaatcgaaaaggggtttttcgccggag  26568800                                                                                   <---------LBD16                                                                                 <-----------GT1                                                                               <---------YAB1   <------ZmHOX2a(1)     ----------->HVH21               ------------>CBF   <---------MYB52(1) ---------RAV1(2)      <----------DOF2                  *TSS               <-------GAMYB ->NtERF2        <---------ZAT14               <------MYB46(1)            ----------->GT1 -->ATERF1(1)    --------->ZAT18               <---------MYB46(3)     <---------DEAR3(2)           <- ->LBD16 <------ZmHOX2a(1)                     <------MYB83           <---------SPL7               == --ATERF1(1)     <---------ZAT18           <---------MYB46(3)         ----------->HVH21 <-------TEIL< >DEAR3(1)       --------->ZAT14           <-----------RAV1(1)     <-----------HVH21 --------->LBD16<   ccagaggaagaggagagagtgcagtctttgacgactcatccccatttgttggttttgtgctcaattttcggtcggaccgttattatccggttcatgttat  26568900                                                                     ---------->ID1                                                                 <----------DOF2                                                            <-----------TGA1                                                           --------->ANAC58                                                           --------->ANAC46                                                           --------->TGA1a                                                           <---------ANAC55(2)                                                           <---------TGA1a                                                           =================bZIP_DOF                                                           --------->ANAC55(1)                                                           =================bZIP_DOF                                                           --------->bZIP60(2)           <------MYB46(1)                                 <---------O2           ----------->GT1                                 --------->ANAC58                    ------           <------MYB83                                    --------->O2                        <-----         <---------MYB52(1)                                --------->bZIP60(1)                 ------        <-------GAMYB                       --------->YAB1 <---------bZIP60(1)            --------->ANAC46       <-----------RAV1(1)                  ----------->GT1<<<<<<<<<<HY5<----------DOF2   --------->ANAC58       <---------MYB46(3)                  <---------TOE2(3)<-----------HVH21           --------->MYB52(1)     <---------At4g35610                   <---------YAB1  --------->ANAC55(2)        --------->MYB46(3)   <--------P                        <---------YAB1       ------>NtERF2 ------>ZmHOX2a(1) --------->ANAC58 ----------RAV1(2)                 ----------->GT1        <-----------STF1            <---------MYB52(2) ==================RAV         <---------AHL20(2)--------->ICU4  <---------DAG2  --------->HSFB2a(2) ---------TOE2(3)       ----------->GT1 --------->ICU4   <---------ALFIN1        <---------HSFB2a(2)< ---------TOE1(3)     <------ZmHOX2a(1) <---------YAB1--------->ANAC46 --------------------->WRI1<---   ttcaggttgctgttggtaaaattaggaggtaaatttatggtgattatggtaattcttcgccacgtcactttatccttttaagtctcgaacaaacggcaca  26569000          <---------At4g35610          --------->At4g35610        --------->ZAT18        <---------ZAT14       <------NtERF2      <---------SPL7                                      <---------DAG2     <---------ANAC58                                     --------->TOE2(3)     <---------ANAC46                                   ------->TEIL     <---------ANAC58                         --------->MYB46(3) --->ANAC58                                  -------->P<---------ARR14(2) ----ALFIN1                       --------->YAB1---------->DOF2 --->ANAC58             --------->GLK1(2)   --------->WOX13(1)<---------CCA1(2) ----------DOF2      <---------TOE2(3)   --------->TOE2(3)--------->TOE1(3) ------ALFIN1    <------------CBF<---------YAB1------->GAMYB<---------CCA1(2)      <----------DOF2---   cactttggcgtccactgagaattgagaatatagttatcatcaacatcaaccaaagaagaaccttatctctcaagaggtctctctgttttatcgaatgaac  26569100            ------>ZmHOX2a(2)            =================HOX2a_HOX2a                                                         <---          <---------ARR11(3)                                ---------->ARF1                      <---          --------->ARR11(3)                            <---------ANAC58                    ---------     ------->TEIL                    <---------GLK1(2)  <---------ANAC58     --------->ANAC58    ----  <---------ATHB12        --------->ATHB12            --------->ARR11(3)     --------->ANAC58   -----  <---------YAB1         <---------YAB1               <---------ARR11(3)   ---------->DOF2  --------- --------->CBF        ------>ZmHOX2a(1)      --------->ANAC46    --------->LBD16      <---------ARR14(2)   tacaatgaatgtgatctcatgctccttctcattggaacataatctctacgagacaatgtcttgtctccagagatgctcaaagcaagaagaactgaagcaa  26569200      --------->ANAC58      --------->ANAC58  --------->ANAC46  --------->ANAC58  --------->ANAC58                <---------ARR14(2) --------ARR10                    --------->ARR14(2) ------ARR14(2)                   <---------GLK1(2)       <----------DOF2 >ANAC58               <---------ANAC58        --------->YAB1                                    <--- ----->ARR14(2)        <---------ANAC58       <---------ATHB12         --------->ARR14(2)     <------ ---->GLK1(1)          <---------ANAC46     --------->WOX13(1)<----------DOF2             <---------DAG2 >ANAC58   --------->At4g35610   <------ZmHOX2a(1)---------->DOF2      <---------ARR14(2) <----------DOF2   atccacgctcgcatgctgaaaactggcttgatgcaggattcttatgcaatcacaaagtttctttctttctgcatttcttcaacgtcttccgactttttgc  26569300                                                          <---------ICU4                                                          --------->YAB1                                                  <---------ARR14(2)                                               <---------HSFB2a(2)                                           <---------ANAC58                                           <---------ANAC46                                           <---------ANAC58                                        <----------DOF2   -------->HAHB4                                     <---------RVE1(1)   <---------ATHB12                   <---------ANAC46 --------->ARR14(2)   --------->ICU4                --------->TOE1(2)                  <---------LBD16   <---------ARR11(3) ------>MYB46(1)               ------->TEIL        <---------GLK1(2)           <---------GLK1(2)<---------MYB59          <-----------RAV1(2) ------DAG2     ----------->HVH21   <---------ARR14(2) ------>MYB83     <---------ANAC58 -----GT1   <---------YAB1   ------>ZmHOX2a(2) --------->HSFB2a(2)      <---------ANAC58   cttatgcccagattgtgtttgacgggtttgatcgaccagatactttcttgtggaacctaatgatcagagggttctcgtgctcagacgaacccgagaggtc  26569400  Previous    Next  AGI:  At5g66510.1    Description:  GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3); carbonate dehydratase. similar to GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1), carbonate dehydratase [Arabidopsis thaliana] (TAIR:AT1G19580.1); similar to hypothetical protein [Thellungiella halophila] (GB:ABB45859.1); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004) Range:  from: 26566930    to: 26568856    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g66520.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G06540.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15415.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66581.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 26569105    to: 26570967    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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