Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                                                  <--                                                                                           --------->ANAC46                                                         --------->AHL20(2)                --------->ANAC58                                                         <---------AHL20(2)                --------->ANAC58                                                        <---------YAB1                  <---------ARR14(2)         <---------ALFIN1      <-----------GT1        --------->YAB1               <---------ANAC46    ------->GAMYB            <-----------HVH21        --------->AHL20(2)     -------->P --------->ARR14(2)   <---------ALFIN1      --------->ATHB12  --------->ATHB12            ---------->DOF2--------->REM1(2)   ccctaacaccctcacttcttatattcttcattgtcacctcttgtttgattagcaaattataaattggtggaataaaagctaccctacgtgtatacgcctt  26483000                                <--------HAHB4                                <---------ICU4                                --------->YAB1                               <---------ATHB12                  <---------AHL20(1)     <---------YAB1          <-----------GT1                                                       <-    --------->AHL20(1)       --------->YAB1                                                  <-------    <---------AHL20(1)       --------->WOX13(1)                                   <---------ICU4   <-   <---------------AGL15 <---------ZAT6                                           --------->YAB1   --   ==================================================================================================  <-----------------AGL3<---------YAB1                                            --------->ATHB12 <- -------ANAC58    --------->AHL20(1)               --------->ZAT14               <---------ATHB12  -- -------ANAC58 --------->AHL20(2)            <-----------GT1                     --------->ICU4   ---   gcttaatatttttgggattatatattagtattaatcattttcttaagttactcttcagtcttcataagttgacatcaaaacaaatcattacaaatttacg  26483100       <---------YAB1    <---------------AGL15    --------------->AGL15    <----------DOF2   ===================================================MADS_MADS   <---------DAG2   --------->TOE2(3)   <-----------------AGL3 ------>MYB83 ------>MYB46(1)        --------->LBD16 -------->P   --------->ARR11(3) --------MYB111(1)      --------->At5g28300 ----GT1      <---------ARR14(2) --------MYB59--------->ARR14(2)                                                            --------- ------->AtMYB61       <---------ANAC46                                                   <---------ANAC46 ====================MADS_MADS                      ------->TEIL               --------->AHL20(2) --------MYB111(2)     ----------->GT1  ---------->DOF2 ------->TEIL    <-----------GT1 ------->TEIL ------->MYB46(3)    ------->TEIL     <---------------AGL15 <-----------GT1    --------->AHL20(1) ------>MYB46(3)  ------>ZmHOX2a(1)   --------------->AGL15<<<<<<<<<MYB98      <---------AHL20(1)   accaacctttttatagtatcctgtaccgtaaaaacgattactaaaagaagaatgaatgtatgttactgtattagttaccaatataatatgcatcgtgtaa  26483200                                                                                              <------                                                                                          --------->ANAC58                                                                                         <---------LBD16                                                                                      <------ZmHOX2a(2)                  --------->MYB52(2)                                                 --------->ARR14(2)                  --------->MYB55(2)                                                 <---------ARR14(2)                  <---------MYB46(3)                                                ------->GAMYB                  --------->MYB111(1)                                              --------->MYB46(3)                  --------->MYB111(2)                                            <---------DOF5.7(2)                 <--------P                                                     <---------WRKY38(1)              <---------ZAT6                   --------->YAB1                   <---------WRKY45          <---------ZAT14      <---------MYB46(3)<---------YAB1                 <---------WRKY12       <------MYB83<-------GAMYB     --------->YAB1          <-----------GT1--------->DAG2--------->ANAC58      --------->MYB59----------->GT1<---------YAB1  --------->ICU4         ---------->DOF2--------->ANAC46 -->GT1<------MYB46(1)    --------->ICU4       ----------->GT1          ----------->GT1 <---------ALFIN1   cttcaaatttggtatagtggtagttgtaaatattggttatcatgttcaattgtaataagtttgtaaccagttgatggtaaagtcaacgatccacggcttt  26483300                                                                           <---------ALFIN1                                                                           ----------->RAV1(1)                                                                        --------->PCF2                                                  ---------->DOF2      <-----------TCP11(1)   <-----------RAV1(1)                 --------->PCF2            ---------->DOF2                   <- ----DOF2                       --------->ATHB12<---------AHL20(2)--------->DAG2       --------->ATHB12   gctggatgttgccatgttggaatggagaagcgcatcatttgggcccatatttaaaagcccatactcaaaaagttggcccacatagaaaatcgttggcatc  26483400                                                                                                <----                                                                                                <----                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                             <-------GAMYB               --------->O2                                                                 <--------               <---------O2                                                                 ---------        --------->ALFIN1                                                                   <---------AtMYB61       <-------GAMYB                                                                 <------NtERF2       <------NtERF2                                                               <---------ANAC46      <---------MYB46(3)                                                           <---------DEAR3(1)      <---------ORA47(2)                                                          <------NtERF2------     --------->ALFIN1<------ZmHOX2a(2)                                           <-----------HVH21  <     <---------DEAR3(1)       *TSS                             --------->LBD16<---------ANAC58<------     <---------DREB2C(2)  ---------->DOF2                     --------->DEAR3(1)--------->ANAC46<---- ---------->DOF2    --------->ARR14(2)                  --------->ANAC46      <---------ANAC58<------ --------MYB52(1)   <---------ARR14(2)   <-----------HVH21   <---------LBD16  --------->ANAC55(2)   <   agttaaggcggtggaagacgtcgatccctaaagtcgaagcccttgttagggcttctatacatcaccggcgatattggtttacgcgtcggagagatggttg  26483500  <---------ZAT6 --MYB46(1) --MYB83 ----DEAR3(1) ----MYB46(3)                             <---------ANAC55(2) --->MYB111(2)                            <---------ANAC55(1) --->MYB46(2)                             <---------ANAC58 --->MYB111(1)                            <---------O2 ----AtMYB61                         --------->ALFIN1 -MYB46(3)                          <------NtERF2 >ATHB12 --------->YAB1        <---------DEAR3(1) --->MYB55(2)                 <---------LBD16 ---------ANAC58     --------->GLK1(1)    <---------ANAC58 --P<---------YAB1  <---------ARR11(3)    <---------ANAC46        <<<<<<<<<<<<<<<<<LFY -----MYB46(3)  --------->ANAC46  <---------DEAR3(1)        <---------YAB1 ---MYB55(1)    --------->ANAC58 <---------ABI4(1)          <---------AHL20(2) ---------ANAC58--------->ANAC58 <------NtERF2       <-----------GT1   <---------ATHB12       <------ZmHOX2a(1)   gtgagtgttattgatgacacgagatttcaattctcggcggtgtaacgtgaagtcttaacaatttcattgtccaatggtggaatttacagagagagaggac  26483600                                                    <---------MYB52(1)                                                  <---------ANAC46                                                 --------->DEAR4(2)                                <-                                                 <------NtERF2                              <--------                                                 --------->RAP2.3(1)                      --------->HSFB2a(1)                                                 --------->ATERF1(1)                 <---------HSFB2a(2)                --------->At4g35610             <---------RAP2.3(1)       <-----------GT1 <---------HSFC1(2)                <---------At4g35610             ------>NtERF2            <-----------GT1  --------->HSFC1(2)           <---------GLK1(1)                   <---------DEAR3(1)      <---------ICU4--------->HSFB2a(2)     <----------DOF2                      ----------->RAV1(2)         --------->ICU4 --------->HSFC1(1)  --------->GLK1(2)       --------->AHL20(2) <---------ATERF1(1)   <---------AHL20(2)<---------HSFC1(1)   cgagtttctttggaactcagcgaagaaattatacagagcatggaacctggcgccgttttcagagactatgtaatttttccttcccttctcgaagctttct  26483700                                                                 <---------At4g35610                                                                 --------->At4g35610                                                                 --------->ZAT2                                                              <------ZmHOX2a(2)                <---------YAB1  <------ZmHOX2a(1)            --------->ARR14(2)               <---------AHL20(2)                            <---------ARR14(2)               --------->AHL20(2)       <----------DOF2   <---------TOE1(2)               <---------AHL20(1) --------->ALFIN1  <---------GLK1(2)             <---------YAB1     =====================================HOX2a_HOX2a ---------DOF2--------->YAB1  <---------TOE2(3)     <---------ICU4          <----------DOF2 --DOF2 ------>ZmHOX2a(1)   ---------->DOF2  <----------DOF2<------ZmHOX2a(1)    --------->ANAC46   tcttttgttcctgttattataatgggattttaaaggatggagcttttcttttcagaattgcaggatcagctcaattgactttcacaaaacttcgacttgt  26483800                                                     <-------MYC2                                                     ------->MYC2                                                     <-------PIF5                                                     <-------MYC3                                                     ------->MYC3                                                     ------->PIF5                                                     <-----------HVH21                                                    --------->ANAC55(2)                                                    <---------O2                                                    <---------ANAC55(2)                                                    --------->O2                                                    --------->TGA1a                                                    <---------TGA1a                                                    --------->bZIP60(2)                                                    --------->ANAC58                                                    --------->ANAC58                                                   ------>NtERF2                                                  <-----------RAV1(2)                                                  ------------->DYT1                                                ------>NtERF2                                                <-----------HVH21                                               --------->DEAR3(1)                                               --------->ANAC46                                              <---------At4g35610                                              --------->At4g35610                                              <------NtERF2                                             ------>NtERF2                                             <---------ATERF1(1)      <---------At4g35610             ========================RAV      <---------ZAT2                  <---------REM1(1) --------->MYB52(2)      --------->At4g35610             <-----------RAV1(1)--------->GLK1(1)    <---------ANAC58      --------->ZAT2                --------->YAB1<---------ALFIN1            <---------ANAC58    --- ----------->HVH21           ---------->ID1 <---------ATERF1(2)<---------ALFIN1                 -----   atggtgacagctagcgacgatgactcaattcgtctctatgatgttgccagcgccacgtgagttccaaaccccaaactctgtcttgagtattgctctataa  26483900  Previous    Next  AGI:  At5g66240.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G14530.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80813.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 26483430    to: 26485674    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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