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Intron region
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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                               <----
                                                                                              ------
                                                                                             <------
                                                                                             <------
                                                                                            --------
                                                                                            --------
                                                                                            --------
                                                                                            ========
                                                                                            --------
                                                                                            <-------
                                                                                            ========
                                                                                            --------
                                                                                            --------
                                                                                            <-------
                                                                                            --------
                                                                                     <---------YAB1-
                   <---------HSFB2a(2)                                           <---------ANAC46---
-------->ANAC58    --------->HSFB2a(2)                                           <---------ANAC58---
-------->ANAC58    --------->TOE2(3)  ----------->GT1                            <---------ANAC55(1)
----->HVH21 <---------CCA1(2)       <---------ANAC46                             <---------ANAC58<--
->TGA1a   <---------CCA1(2)         <---------ANAC58                        <---------ICU4<---------ALFIN1
--TGA1a------>ZmHOX2a(1)            <---------ANAC58        <-------TEIL   <-------TEIL --------->CCA1(2)
 
acacggtttcctcttatctcttccataaactcagccatagcctgtaaaaaatgacagaaaatgttcatgagaaatggattcattacttgtgatacacgtc  26349600
-------RAV1(2)
--->TGA2(2)
-----HVH21
-----TGA1
->O2
->ANAC58
->bZIP60(2)
==================bZIP_DOF
->ANAC55(1)
--O2
==================bZIP_DOF
->TGA1a
->ANAC58 --------->ATHB12                                       --------->YAB1
--TGA1a<----------DOF2                   <----------DOF2       --------->ICU4
->ANAC46<---------YAB1                   <---------DAG2        <---------YAB1
-------->ARR14(2)                  --------->At4g35610    --------->ANAC58                <---------
-------->GT1 <---------AHL20(2)    --------->HSFC1(2)     --------->ANAC58            <---------ARR11(3)
------>At4g35610                   <---------HSFC1(2)   <---------ANAC58            --------->ANAC58
-------At4g35610             ---------->DOF2            <---------ANAC58            --------->ANAC58
 
aggttactctctttattgaatttgagaaaaatgaaagaagcttacttttttgaattcaggcatgccatgatagtcttgaaatagagcaagctctctgaaa  26349700
        --------->ARR14(2)
        <---------MYB52(1)
    <---------At5g28300
   <---------WRKY18(1)     --------->O2
   <-----------GT1         --------->TGA1a
  ----------->HVH21       --------->LBD16                                                          <
  --------->WRKY38(1)     ------>NtERF2                                                           <-
  --------->WRKY12  <---------ANAC58                                             <---------RAP2.6(2)
 <---------WOX13(1) <---------ANAC58           --------->YAB1                <----------DOF2   -----
--------AGL3------>ZmHOX2a(1)                  <---------ICU4           <---------ZAT2       -------
 
atggattgaccgttcctcttgagacttgccgcgtctgggttcttagttaaccatgactcgattagatcgaaacatagctggttttcggctagacccatct  26349800
                                         --------->TOE2(1)
                                 --------->ARR14(2)
                                 <---------GLK1(2)
                                 <---------ARR14(2)                                            -----
                          --------->YAB1 --------->TOE1(1)                                 <--------
          <---------TOE2(3)     <------ZmHOX2a(1)                                  <---------WRKY18(1)
------ZmHOX2a(2)         <---------YAB1 --------->HSFB2a(2)                       ----------->HVH21<
--------ARR11(3)     ------>ZmHOX2a(2)  <---------HSFB2a(2)               <---------ANAC58 <--------
---->HSFB2a(2)       ==================HOX2a_HOX2a                        <---------ANAC58 <--------
---->RAV1(2)       <---------ARR11(3)   --------------->AtSPL3     <------ZmHOX2a(1) <---------YAB1<
 
ggatcatcccattagggttcttgatctcatcataaggattcttctcgtactcttcccatcccaagaagtaggatgagtcttgtccatgaccattgcttgt  26349900
                                                                                                 ---
                                                                                                <---
                                                                                               <----
                                                                                               -----
                                                                                               -----
                                                                                               <----
                                                                                               -----
                                                                                               -----
                                                                                               <----
                                                                                   --------->ANAC58
     --------->ETT(2)                                                       ========================
----->ID1                                  --------->GLK1(2)                ========================
-ANAC58                                   <---------ARR11(3)                <------ZmHOX2a(1) ------
----------DOF2                            <---------GLK1(2)            ----------->HVH21      <-----
-ANAC46   <---------At4g35610             --------->ARR11(3)        <---------MYB46(3)       -------
-ANAC58---------->DOF2                   <---------RVE1(1)         --------->ALFIN1--------->ANAC58
---------DAG2                  ---------->DOF2<---------AtMYB61  <-----------RAV1(1)  ---------->DOF2
 
cacttttgtcgaaagctgtttcattctctgtttttaaagtcaagagattttggtcgtagagaagactaatgtgggtgaaggagagaacgaaaagaagaga  26350000
      <---------TOE1(3)
      <---------TOE2(3)                                               <---------AHL20(2)
--->ZmHOX2a(2)                                                        --------->AHL20(2)
---ZmHOX2a(2)                                                         <-----------TBP
-----ARR14(3)                                                       <---------AHL20(2)
---->ARR11(3)                               ------------>CBF        <-----------TBP
---->ARR14(3)                              --------->ANAC58       <-----------TBP
-----ARR11(3)                          <---------HSFB2a(2)        <---------AHL20(2)
---->AGP1                             <------MYB46(1)             --------->AHL20(2)
---->ARR14(2)                         <------MYB83              <-----------TBP   --------->YAB1
-----ARR14(2)                        *TSS  --------->ANAC58   <-----------TBP     <---------ICU4
===HOX2a_HOX2a                      <--------P          <---------MYB52(1)       <---------YAB1    <
====HOX2a_HOX2a                    <-------GAMYB       <-------GAMYB--------->AHL20(2)--------->GLK1(2)
--->GLK1(1)                       <---------MYB46(3)  <---------MYB46(3)         --------->ICU4    -
----GLK1(1)      <------MYB83    <---------AtMYB61    <-----------RAV1(1)      --------->YAB1     --
---->ARR10       <------MYB46(1) --------->ALFIN1     <---------DEAR3(2)   ----------->GT1--------->MYB52(1)
 
tcttgaattagggtttaagttggtgaagagtgagatgtggttggagaagcaatgggtctgttgggatatatatatatatagataataataatctaacgac  26350100
                            --------->GLK1(2)                                                      -
                      ----------->RAV1(1)                                                          =
            --------->AHL20(2)                             <---------HSFB2a(2)                     <
            <---------AHL20(2)                             --------->HSFB2a(2)                     -
            --------->AHL20(1)--------->YAB1            <---------SPL7                        ------
         --------->YAB1  ------->GAMYB               <---------At5g28300                      ------
---------AHL20(2)    <---------bZIP60(1)            <-----------GT1  --------->TOE2(3)<---------GLK1(2)
-------->AHL20(2)    --------->bZIP60(1)            <---------WRKY18(1)        ----------->GT1------
------->AHL20(2)----------->GT1               <----------DOF2       <---------YAB1  --------->ICU4 <
 
atttaatttcaaaaataaaatgtgacaacagaatcagaaactagagagacttttttgaccgtccagacattaccatagtttttagtaaatattctccaag  26350200
                                               --------->ANAC58
                                               --------->ANAC46
                                       --------->ATHB51
                                       <--------ATHB1
                                       <---------ICU4
                                       --------->YAB1
                                       <--------HAHB4
                               <------ZmHOX2a(2)
-------->O2            <---------AHL20(2)      --------->ANAC58
========================bZIP_DOF      <---------ATHB12
---------O2           --------->AHL20(2)   <-----------GT1                            --------->ZAT14
-------->TGA1a     --------->AHL20(2) <---------ATHB51               --------->AHL20(2)
--->ANAC58        <---------YAB1------>ZmHOX2a(2)          <---------AHL20(2)         <---------ZAT14
--->ANAC58     --------->AHL20(2)     --------->AHL20(2)  --------->AHL20(2)      <---------ICU4
--->ANAC46   <----------DOF2   --------->GLK1(1)       --------->AHL20(2)    --------->YAB1  -------
---------TGA1a <---------AHL20(2)     --------->ICU4  <---------AHL20(2)     --------->AHL20(2)
 
acatgtgagacaacttcttttattatttaatgcgatctccaataattaacaagctatattatttaatacaaaataaacaattaaaacattgcagtagttc  26350300
                           --------->ATHB12                                            --------->AHL20(2)
                           -------->ATHB1                                          <---------YAB1
                           --------->ATHB51                                   <------ZmHOX2a(1)
                          <---------YAB1     --------->ATHB12                <---------YAB1       --
                       ------>ZmHOX2a(2)     <---------ICU4                 <---------TOE1(2)    ---
                     <---------ARR11(3)      --------->ATHB51          <---------ARR11(3)   --------
                     --------->ARR11(3)     <---------YAB1             --------->ARR11(3)  ---------
                 --------->YAB1           <---------AHL20(2)        <---------ATHB12   <---------AHL20(2)
   <----------DOF2<---------KAN4(2)      --------->AHL20(2)  ---------->DOF2<---------TOE2(2)  -----
-->ARR11(3)   --------->YAB1       --------->GLK1(2)         <-------TEIL   <---------TOE2(3)-------
 
ttgtttctttttgaaaataagaatgatctattattgagtttctatttattattgcattcacacatacagcaataaatcttaggattatgtttaaataaaa  26350400
                                                                                                   <
                                                                                              ------
                                                                            --------->HSFB2a(2)    -
                                                                            <---------HSFB2a(2)    <
                                                             --------->AHL20(2)              <------
        --------->At4g35610                                  <---------AHL20(2)              -------
------->AHL20(2)                                            --------->AHL20(2)              --------
------>AHL20(2)              <---------AHL20(2)             --------->AHL20(1)       --------->ANAC58
->YAB1  --------->ZAT2      <---------AHL20(2)              <---------AHL20(1)       --------->ANAC58
>AHL20(2)          <----------ID1                           <---------AHL20(2) <------ZmHOX2a(1) ---
---->YAB1--------->AGP1     --------->AHL20(2)    <----------DOF2    ------>ZmHOX2a(2) --------->YAB1
-->AHL20(2)  <---------REM1(2)               <---------At4g35610     =================HOX2a_HOX2a<--
 
ataaaaaaaccagctctacatagggacaaaattaaataacacattttgagcttctttccaaaatttatttgatcgttttctaggattcaagcatatttaa  26350500
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AGI:  At5g65800.1   
Description:  ACS5 (ACC SYNTHASE 5); 1-aminocyclopropane-1-carboxylate synthase. Identical to 1-aminocyclopropane-1-carboxylate synthase 5 (ACS5) [Arabidopsis Thaliana] (GB:Q37001;GB:O49537;GB:Q9S9C3); similar to ACS8 (1-Amino-cyclopropane-1-carboxylate synthase 8) [Arabidopsis thaliana] (TAIR:AT4G37770.1); similar to ACS4 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4), 1-aminocyclopropane-1-carboxylate synthase [Arabidopsis thaliana] (TAIR:AT2G22810.1); similar to ETO3 (ETHYLENE OVERPRODUCING 3), 1-aminocyclopropane-1-carboxylate synthase [Arabidopsis thaliana] (TAIR:AT3G49700.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74730.1); similar
Range:  from: 26347972    to: 26350038    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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