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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                              --------->ARR11(3)
                                                              --------->ARR14(2)
                                                              <---------ARR14(2)
                                                              <---------ARR11(3)
                                                    ---------->DOF2
                                                 ------>ZmHOX2a(2)
                                                <------ZmHOX2a(2)
                                               --------->ARR14(2)           <---------AHL20(2)
                                        <-----------HVH21     <---------ARR11(1)  --------->YAB1
     <---------ARR11(3)              --------->At4g35610     <---------CCA1(2)  <-----------GT1
     --------->ARR11(3)    --------->ANAC58    <---------ARR14(2)          <---------AHL20(2)
   <---------TOE2(3)       --------->ANAC58    <---------ARR11(3)          --------->AHL20(2)
---TEIL   <---------YAB1   --------->ANAC46    --------->ARR11(3)      --------->ICU4
-------AtSPL8      <---------ANAC46  <---------At4g35610   --------->YAB1--------->TOE2(3)
 
cagaataagatttatgagtctggctgatacacccaaacacatctgtcaaggatcttaaagaatcatatcttctaaatattaattttcatcacattgtgtt  26328400
                                                                    <---------ANAC58
                                                           <---------YAB1
                                                         <-----------GT1
                                                     <---------AHL20(2)
                                                    <---------AHL20(2)
                                                    <---------AHL20(1)                             <
                                                    --------->AHL20(2)                         <----
                                           --------->ARR11(3)       <---------TGA1a            <----
                                      ----------->GT1--------->AHL20(2)                        -----
                       --------->AHL20(2)  <---------ARR11(3)       <---------O2              <-----
     <---------At4g35610         <---------YAB1     --------->AHL20(1)----------->HVH21       ------
     --------->At4g35610<---------AHL20(2) --------->GLK1(2)        <---------ANAC58--------->GLK1(2)
 
tttatggcagaagaaagtatgaaacatttaatggttatgagtagaaaatctaaaatttaattaccatacagtcgtgactcttgagaaaatcggaaatttt  26328500
        <---------AHL20(2)                         <---------At4g35610                  <---------MYB52(1)
-----------GT1                                     ----------->GT1                   <------NtERF2
-----AHL20(2)                                      --------->At4g35610               <---------MYB52(1)
-----YAB1--------->YAB1                            <------NtERF2  <------ZmHOX2a(1) ------>NtERF2
---->AHL20(2)                               <------------CBF   <------ZmHOX2a(1)--------->ANAC46   <
----AHL20(2)                   ----------->GT1    --------->RAP2.6(2) --------->DAG2<-----------HVH21
--->AHL20(2)<-----------GT1  <------------CBF    <---------RAP2.6(2)---------->DOF2--------->DEAR3(1)
 
aattaccatatataatcacctcgtttaaactaaattgaaaattttggtattggccgctaaaaacgaggaggaaaaggcataaaacgccgtcgtttgggca  26328600
                                             ---------->DOF2
                                        <---------------AGL15
                                       ----------------->AGL3
                                       <---------MYB59                                 --------->ZAT14
                                   --------->WRKY12                              <-----------HVH21
                                   --------->DEAR3(1)                       ------->GAMYB--------->GLK1(1)
            --------->YAB1         --------->ETT(2)                        --------->ANAC58
<-----------GT1                    --------->WRKY38(1)                     --------->ANAC58       <-
---------YAB1                      <---------ETT(2)                       --------->ANAC46      <---
 
ttttgactggtcgaataaaaactcttttgactaaaacgtcgacctaaaaaaagaagagagagactagacctctctacaacgcactgtcacagaactcttc  26328700
                                                           ------>ZmHOX2a(2)               <--------
                                                          =============HOX2a_HOX2a       --------->YAB1
                                                         <---------ARR14(2)         --------->LBD16
                                                         --------->ARR14(2)        --------->ANAC55(2)
                                        --------->DEAR3(1)<------ZmHOX2a(2)  <---------GLK1(2) <----
                                   --------->ANAC58 ------>ZmHOX2a(2) --------->MYB59<---------MYB52(1)
                                   --------->ANAC58 ===================HOX2a_HOX2a --------->ANAC46
                               --------->CCA1(2)<---------YAB1        <---------TOE2(3) --------->ICU4
                              <----------ID1 <----------DOF2    <------ZmHOX2a(1) <---------LBD16
----------RAV1(1)     --------->DAG2--------->MYB46(3)  <---------GLK1(1)  ----------->ARR10 -------
-------DOF2          ---------->DOF2<---------ABI4(2)   --------->GLK1(1) <-------TEIL <------------CBF
 
tttgttgtgcgagagagaaatagaaaaagtgaagagacaagcaccgtgcttttgatcggagatcggaggaatttaggttcgattctccgtaattgtgata  26328800
                                                           --------->ATERF1(1)
                                                           <------NtERF2
                                                           <---------At4g35610
                                                          <---------ERF1
                                                          <---------ATERF1(1)
                                                          <---------MYB46(3)
                                                          <---------RAP2.3(1)
                                                          <---------DEAR3(2)
                                                         <---------RAP2.3(2)
                                                         <---------RAP2.6(2)
                                                         <---------DEAR3(1)
                                                         <---------ANAC46
                                                       <---------RAP2.3(1)
                                                       <---------ATERF1(1)
                                                 ------>NtERF2
                                                <------------------SPL14
                                                --------->DEAR3(1)
                                           <---------DOF5.7(2)
                                           ---------->DOF2------>NtERF2       --------->ARR14(2)
-YAB1                              <---------GLK1(1)  <---------DEAR3(1)   <---------YAB1
--------CBF                        --------->GLK1(1) --------->SPL7       <---------TOE2(3)
-->ARR11(3)             <---------SPL7   --------->DOF5.7(2)           <---------WOX13(1)
 
ttgggagagactatggcaacttcttctcgttcggagcgatttccgataacgccgagtacggcggctactaatagattgacgattacgcctaattctaggg  26328900
                                             --------->GLK1(2)                            --------->TOE2(3)
                                            --------->ARR11(3)                          ------>NtERF2
                                    --------->At4g35610                              --------->At4g35610
                                 --------->ATERF1(1)                               --------->DAG2
                --------->ZAT14  <---------At4g35610                <------ZmHOX2a(2)<---------At4g35610
  ---------->DOF2      <---------ATHB12 ---------->DOF2      --------->MYB46(3)   ---------->DOF2
 
ttttgaaaagccctctcactgaagaaatcatgtggaagcggctcaaagatgctgggtttgatgaacaatcgatcaagaatagggataaagctgccttaat  26329000
                                                                                         <------NtERF2
                                                                                        --------->LBD16
                      <---------TOE2(3)                                                <---------ANAC46
                      <---------TOE1(3)                                        <---------ZAT14
                 <---------ARR14(2)                                          <---------ZAT18
                 --------->ARR14(2)         <---------MYB52(1)               --------->ZAT14
                 --------->GLK1(2)         <-------GAMYB                     <---------ZAT14
                <---------GLK1(2)--------->HSFB2a(2)                    <---------At4g35610
           --------->STY1(2)     <---------HSFB2a(2)            <---------ZAT6 --------->ZAT18
          --------->ANAC58   <---------ANAC58          <----------DOF2  --------->At4g35610        -
          --------->ANAC58   <---------ANAC58     <-----------GT1    <---------YAB1   <---------LBD16
 
cgcttacatcgccaagctagaatctgaggtttgcttctcgatttttcgttgattttctctttctctagtgttatgagcagagtactctaggcgggaacac  26329100
                         <---------YAB1
                       --------->YAB1
                      <---------YAB1                                          <---------AHL20(2)
            --------->YAB1                                                    --------->AHL20(2)
     --------->MYB52(1)<---------ICU4      --------->ZAT18                   <---------AHL20(2)
   <---------MYB52(2) --------->ICU4       <---------ZAT18                 ------->TEIL
 ------->TEIL    <---------ZAT6       <---------ANAC58           <---------At4g35610            ----
-------->YAB1    ----------->GT1      <---------ANAC58       <-----------GT1 --------->AHL20(2) <---
 
aatgaaactaactaatgagagtgttataattactgggattagcttgtgcccttgaagtttgatttttcagttcatatgaatttaattcgtttttgtgact  26329200
                              <-------PIF5
                              ------->PIF5                                          <----------DOF2
                             --------->TGA1a      <---------AHL20(2)               <---------ANAC58
                             <---------TGA1a<<<<<<<GRF7                       <---------ICU4
                      <---------MYB52(1)  ------>ZmHOX2a(1)                   --------->ATHB12
                     <-----------HVH21  <---------ICU4                       --------->ICU4
                     ==================MYC_MYB   --------->AHL20(2)          <---------MYB52(1)   <-
                     <-------GAMYB      --------->YAB1                   <---------ZAT14 <----------DOF2
<---------MYB52(1)  --------->ANAC46 --------->WOX13(1)                  --------->ZAT14<---------ANAC58
----->ZAT18     --------->At4g35610 <---------WRKY38(1)        <---------WOX13(1)  <---------ANAC58
------ZAT18     <---------At4g35610--------->WRKY18(1)  <------ZmHOX2a(1)<---------ZAT18<---------ANAC58
 
gcccttaattgtttcagtcatctccgttacgctcgtgggtcaatcctgacaattttataggatgtaattggtttactgcagttattgctttgctttggga  26329300
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AGI:  At5g65770.1   
Description:  LINC4 (LITTLE NUCLEI4). Identical to Putative nuclear matrix constituent protein 1-like protein [Arabidopsis Thaliana] (GB:Q9FLH0;GB:O49539); similar to LINC1 (LITTLE NUCLEI1) [Arabidopsis thaliana] (TAIR:AT1G67230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17747.1); contains InterPro domain Prefoldin (InterPro:IPR009053)
Range:  from: 26328813    to: 26333223    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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