Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                        --------->MYB52(1)                                                                               --------->YAB1     <--                                                                              <---------YAB1     <---                                                                            --------->YAB1       <---                                                                      -------->P        ------>MYB83                    --------->YAB1                                 --------->At4g35610  ------>MYB46(1)               --------->ANAC46     <---------GLK1(1)     --------->AtMYB61--------->ICU4        <--- -->ANAC58     --------->ANAC55(2)  --------->GLK1(1)  --------->ANAC46    <---------ATHB12      <--- -->ANAC58    <-------TEIL  <---------At5g28300       --------->MYB46(3) --------->WOX13(1)     <----   aaaaaaaaactccatatacataacataattcacagtggaattctaagatggattcaaacaccaccaagtagctaccaattatcaaaaacctagcgaattg  26099800          --------->YAB1         <---------YAB1  --------->ANAC58  --------->ANAC58                                        --------->ANAC58                          - ------>LBD16                                             --------->ANAC58                     <----- -------HSFB2a(2)        ---------->DOF2                --------->CCA1(2)                      <----- ------ANAC58         ---------->DOF2                  <----------ID1                     --------->TOE2(3) ------LBD16    <---------ICU4                     ---------->DOF2                   --------->HSFB2a(2) ------ANAC46   --------->YAB1                   <---------ATHB12     --------->At4g35610 --------->AtMYB61 ------ANAC58--------->YAB1                    ------>MYB83           <---------At4g35610 --------->TOE1(3) -----LBD16 <---------YAB1                     ------>MYB46(1)        --------->ZAT2 <---------HSFB2a(2)   cgggaagcacgatgataatcatatcaaagaagcgagttatagcaaaaccaaatcaaagagacgaaaaccttgagctcccatttccttctcgaccttagcc  26099900                  <---------HSFB2a(1)                  --------->HSFC1(2)                  <---------At4g35610                  --------->At4g35610                  <---------HSFC1(2)                  --------->ZAT2                  <---------ZAT2               --------->At4g35610        <----------CDC5      --------->ANAC58      --------->ANAC46      --------->ANAC58   ----------->HVH21 --------->At4g35610         <---------ALFIN1                                 ------->GAMYB   <------ <---------At4g35610 <-------TEIL        <---------ATHB12         --------->HSFC1(1)          <<<<<<< ------>TEIL   <---------At4g35610 <----------DOF2                <---------HSFB2a(2)       --------- ----ANAC58 --------->ZAT14------>ZmHOX2a(1)                      --------->HSFB2a(2)      --------->MYB46(3) ----ANAC58 --------->At4g35610<---------CCA1(2)                  ------>ZmHOX2a(1)   --------->ZAT6   tgcatctcacgcagagcagcagcttcgtcctccatctctttcaatcgtttcttcatttcatccaactcctagaattacaacagcaataacacaacaatca  26100000                                                                                                  ---                                                                                                  <--         --------->ANAC58                                                                        <---         --------->ANAC58         <-----------HVH21                                            ------         --------->ANAC46    --------->ZAT2                                               --------->ANAC46    <---------ARR14(2)       <---------At4g35610     ------------------------>ANAC81--------->TOE2(3)    --------->ARR14(2)   <---------ATHB12    ------------------------>ANAC81        --------->TOE1(3) ---ATHB12             --------->WOX13(1)---------->DOF2                          --------->ARR11(3) <<ARR2  --------->ANAC55(2) <---------ZAT2--------->ICU4             ----------->GT1     ------->GAMYB >WOX13(1)           <---------ATHB12 <---------ANAC55(2)         ---------->DOF2 <---------ARR11(3)-   aacacatatacacgcgataacaaatcaatcgagctcagtcacataaagatgagcaaaacagtaagagagaaagagataatagtagaccttaaccgcatca  26100100                ----------------->AG        --------->RAP2.6(2)                                      --------->HSFB2a(2)      --------->At4g35610                                        <---------HSFB2a(2)      --------->ZAT2       <--------P               <---------CCA1(2)      <---------ZAT2--------->ARR14(2)     <-----------GT1   --------->O2      <---------At4g35610  ============================================MYC_MYB           ------->PIF5     ----------->RAV1(1)  =============================================MYC_MYB    ---------->DOF2   --------->At4g35610    <-------GAMYB  <---------ARR11(3)  --------->TGA1a    --------->At5g28300   <---------At4g35610<---------LBD16    --------->ARR14(2)  <---------O2   --------->AtMYB61 ------>YAB1    <-----------------AGL2   <---------ARR11(1)  ================================bZIP_DOF -------ICU4  --------->ARR14(2)         --------->ARR11(3)  <---------TGA1a<---------ALFIN1 ------YAB1   <---------ARR14(2)         <-----------ARR10----------->HVH21--------->MYB46(3)   ----- --->YAB1    <---------CCA1(2)           <---------ARR14(2)------>NtERF2 <-----------GT1 <-------PIF5 -------->At4g35610 <---------ARR14(2)  <---------CCA1(2) --------->DEAR3(1)--------->DEAR3(1) <-----   tcatcagcagcagccatatccaaatcggggttgagagcctccatatctccatccatctctccgacgtctggaatttcaccaccgtaaacctcgtgctcct  26100200                                          <----------DOF2                                       -----                                         <---------ANAC58                                       <----                                         <---------ANAC58                                       -----                                     <---------MYB52(1)                                         -----                                   <---------ANAC46                 <---------ZAT18             -----                                   <---------O2                  --------->MYB59                -----                                   --------->O2       <---------HSFB2a(2)                       -----  ------>ZmHOX2a(1)             ----------->HVH21     --------->HSFB2a(2)     ------------>CBF<------ ->ZmHOX2a(1)               <-----------HVH21       --------->At4g35610 <----------DOF2    <--------- ----ALFIN1                --------->ANAC46*TSS     <---------At4g35610 <---------DAG2 <---------ARR14(2)   cttcctccatcgtctctctcgctctctctccgtcgcgacgtttgctttgttttcttctgaaaacgcttaggtcactttttgtcaattcggatagcgacac  26100300           --------->MYB52(1)         <---------MYB52(2)        ------>MYB46(1)        ------>MYB83    -------->P   --------->WOX13(1) <---------ATHB12 ---->ANAC58  ------->GAMYB -----ANAC55(2)              --------->TOE2(3) ---->ANAC46 --------->MYB46(3) ---->ANAC58--------->RAP2.6(3)                                                                    <- ---->bZIP60(2)         --------->YAB1                                  --------->TOE1(2)       <---- ---->ANAC55(2)        <---------YAB1  <---------MYB59--------->YAB1 <-----------GT1            ----- ---->ANAC55(1)    <----------DOF2    ----------------->AGL1        <-----------GT1             <---- ---ALFIN1 <-----------GT1 <-----------GT1  <---------ICU4---------->DOF2          ----------------->AGL1 -ID1 ------->GAMYB<---------DAG2     <-----------------AGL1    <----------DOF2  <-----------GT1-----   gtaatcaaccaaataacggccctttattataacttaatgggcctaataaggcccaattttaaaagactttttaacattcgaaattaccctatttgatgac  26100400                                                                                                   --                                                                                                  <--                                                                                                  <--                                                                         --------->MYB52(1)       ---                                                                <------NtERF2                 -------                                                               ------>NtERF2                 <-------                                                               --------->LBD16              ---------                                                               <---------RAP2.6(3)          ---------                                                              --------->RAP2.3(3)           ---------                                                              --------->ATERF1(2)           ---------                                                              <---------ATERF1(2)           ---------                               <---------YAB1                --------->DEAR3(2)             <--------                            ----------->GT1                  --------->ATERF1(1)            <--------                          ---------->DOF2                --------->DEAR3(1)                 <--------    --------->ANAC58  <<<<<<<GRF7            <-----------HVH21--------->RAP2.3(2)           ---------    --------->ANAC58 --------->MYB52(1)  --------->ARR14(2)  --------->RAP2.6(3)            --------- --------ICU4       ----------->HVH21    <---------ARR14(2) --------->ZAT2   --------->At5g28300 ---- -----bZIP60(1)   ----------->RAV1(2)    --------->GLK1(2)  <---------ZAT2  ----------->GT1 ========= ---->bZIP60(1)  ------->TEIL--------->YAB1  --------->LBD16<---------ATERF1(1)    <---------ICU4<--- -----TGA2(1)--------->TOE2(2)<---------ARR11(3)  <-----------ARR10  --------->ARR14(2)     --------- ---->TGA2(1)--------->TOE1(2)--------->ARR11(3) <---------CCA1(2)   --------->GLK1(2)     <---------   atcatcacccaaaaacatgcgcctgacagaaagataattgtcgaatccgtcaaatctcaccgagccggcagaatccaacggttaatatttagacacgtca  26100500 --------->AHL20(2) <---------AHL20(2) ------->TOE2(3) ------HAHB4 -------ICU4 ------>ATHB12 -->TGA2(2) ----TGA1 >O2 <---------AHL20(2) >ANAC46                                                ------>ZmHOX2a(2) >ANAC55(2)                                            --------->GLK1(1) >ANAC58                                               <------ZmHOX2a(2) >TGA1a                                                <---------GLK1(1) -ANAC55(2)                                           <---------AGP1 -TGA1a   --------->ARR11(3)                          --------->ARR14(2) -O2 --------->AHL20(2)                               --------->ARR11(3) >ANAC55(1)                                           <---------ARR14(2)                  <----------DOF2 >bZIP60(2)                                           <---------ARR11(3)                  <---------DAG2 ----->ICU4              ----------->HVH21            *TSS       <---------ANAC46     <---------ZAT18 =======================================MYC_MYB       --------->AGP1                  --------->ZAT18 ------YAB1 <------------CBF        ------------>CBF <---------CCA1(2)              --------->At4g35610 >ANAC58  <---------AHL20(1)       ------>NtERF2     --------->At4g35610          --------->DAG2   -- --STF1   --------->AHL20(1)    ------->GAMYB    <-----------HVH21               ---------->DOF2-----   tcattaattaaaaatattgactaatagttgacaacgacgacaatacgaccgtatcagatctctctctgcgtttaaaacttcaaaaaagctcacttttcgg  26100600                                                                                        <-----------HVH21                                                                                      <-------TEIL                                                                                      ------>ZmHOX2a(2)                                                                                     <------ZmHOX2a(2)                                                                                    --------->ARR11(3)                                                                                    <---------ARR11(3)                                                                                    --------->ARR14(2)                                                                                    <---------ARR14(2)                                                                                   --------->GLK1(1)                                                                                   <---------GLK1(1)                                                                                  ----------->ARR10                                                                                --------->LBD16                                                                              <---------LBD16                                                                             --------->CCA1(2)                                                                            --------->ARR14(2)                                                                            --------->ARR11(1)                                                                            <---------ARR14(2)                                                                           =================HOX2a_HOX2a                               --------->ARR14(2)                          <------ZmHOX2a(1)  <------                <---------ARR14(2)                                         ==================HOX2a_HOX2a   --------->TOE1(3)           <---------ARR14(2)                       =====================HOX2a_HOX2a  ----------->GT1             <------ZmHOX2a(1)                         <------ZmHOX2a(1)   <-------- -------->DOF2  --------->ARR14(2)                                      ====================HOX2a_HOX2a ---->At5g28300<------ZmHOX2a(1)                          --------->At4g35610--------->ARR14(1)    <-   taaaagcttaaaacagaggatttagcaagagaggatttagcgagagagagacgttgaagaagatgactagtggaggaggatacggagatccgtcgcagaa  26100700  Previous    Next  AGI:  At5g65260.1    Description:  polyadenylate-binding protein family protein / PABP family protein. similar to polyadenylate-binding protein family protein / PABP family protein [Arabidopsis thaliana] (TAIR:AT5G10350.1); similar to poly(A)-binding protein II-like [Brassica rapa] (GB:ABL97957.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 26097457    to: 26100243    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g65270.1    Description:  AtRABA4a (Arabidopsis Rab GTPase homolog A4a); GTP binding. similar to ATGB3/ATRAB11G/ATRABA4B (GTP-BINDING PROTEIN 3), GTP binding [Arabidopsis thaliana] (TAIR:AT4G39990.1); similar to 80A08_30 [Brassica rapa subsp. pekinensis] (GB:AAZ67615.1); contains InterPro domain Rab11-related (InterPro:IPR015595); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579) Range:  from: 26100554    to: 26101940    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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