Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                -------                         <---------ARR11(3)                              ----------->GT1      <------             ------->GAMYB                                               <---------ANAC46   <--------            --------->ANAC46            --------->MYB52(1)         ---------->DOF2         ----------          --------->MYB52(1)<----------DOF2   <---------O2     --------->TOE2(3)      <---------ICU4  <-------TEIL --------->ARR14(2)  --------->ZAT14             --------->TOE1(3) --------->TOE2(3)   gaaatacatcatcaacggaaacaccaatttctttctgtaaactaagagacatgggtttgcgaaaaccctaaaatcgggtgaaatctcaaaattacctggg  25615300                       <-----------HVH21                      ------>ZmHOX2a(2)                    <---------ARR14(2)                    <---------ARR11(3)                    --------->ARR14(2)                                                --------->YAB1                --------->YAB1                                                        --------->TOE2(3)               <---------ATHB12        <-------TEIL                             --------->ANAC58             ------>MYB83           <---------At4g35610                     <---------SPL7  ---------             ------>MYB46(1)        --------->ZAT2                      --------->bZIP60(1)--------->ICU4           ------->GAMYB    --------->ARR14(2)                          <---------bZIP60(1)<---------ATHB12 -->LBD16  --------->AtMYB61<---------ARR14(2)               --------->AtLEC2 --------->SPL7<-------- ---LBD16-------->P<------ZmHOX2a(1)--------->At4g35610--------->ANAC58 <---------O2--------->ANAC58 -LBD16 --------->WOX13(1) <---------CCA1(2)    <----------DOF2 ---------->DOF2 --------->ANAC58 ---- ->RAV1(2)----------------->AG --------->WOX13(1)      --------->ANAC58 --------->O2--------->ANAC58   gaatagaaatcaaccaaatcaggatcgtcatatccatcagcttcgtcttcctttggcaaggccttgcaaagacgacgtcgtccagcaagcttaatcatgg  25615400                                                                           --------->GLK1(2)                                                                           <---------ARR14(2)                                                                           --------->ARR14(2)                                                                           ------->TEIL                                         --------->YAB1                 --------->ANAC55(2)                                        <---------YAB1                  --------->ANAC58                                        <---------AHL20(2)              <---------ANAC55(2)                                       <---------AHL20(1)               --------->ANAC58                                       --------->AHL20(2)              <-------TEIL --------->TOE2(3)                                       --------->AHL20(1)             --------->CCA1(2)                                      --------->YAB1                  --------->ARR14(1)                               --------->ZAT18                       --------->ARR11(1) >YAB1                 <---------At4g35610  <---------AHL20(2)       <---------ARR14(2) -ICU4<---------CCA1(2)--------->At4g35610  --------->AHL20(2)       --------->ARR14(2) --->TEIL              ----------->RAV1(2) --------->AHL20(2)---------->DOF2  --------->ANAC46   acttcttcgtctcttcatcttctccatctgaagtccccaaatataataaataaaactcaaaatcaaagacagatacgaatccgaaaccatagagaaacga  25615500                                                       ------>ZmHOX2a(2)                                                       ==============HOX2a_HOX2a                                                      ===============HOX2a_HOX2a                                                      --------->GLK1(2)                                                      <------ZmHOX2a(2)                                                     <---------ARR14(3)                                                     --------->ARR11(3)                                                     <---------ARR14(2)                                                     --------->ARR14(3)                                                     --------->ARR14(2)                                                     <---------GLK1(2)                                                     <---------ARR11(3)                                                   ----------->ARR10                                                 ---------->DOF2                            <--------                                              <------NtERF2         <---------ZAT14         <--------                                            <---------ANAC46        --------->ZAT14        --------->LBD16                --------->HSFB2a(2)        --------->RAP2.3(1) --------->ARR14(2)         <---------TOE1(1)                <---------HSFB2a(2)        --------->ATERF1(1) <---------ARR14(2)     <---------ZAT2               <---------TOE1(1)           <------NtERF2 ============================HOX2a_HOX2a               <---------TOE2(1)          <---------ATERF1(1)  --------->ARR11(3)     --------->ZAT2              --------->SPL7              <---------DEAR4(2)  =======================HOX2a_HOX2a            <---------SPL7                <---------ORA47(2)  ========================HOX2a_HOX2a            --------->TOE2(2)            <---------DEAR3(1)   <------ZmHOX2a(1)    ---------->DOF2            --------->TOE1(2)           ======================HOX2a_HOX2a         --------->WRKY18(1)           --------->YAB1               <------ZmHOX2a(1)=============================HOX2a_HOX2a          <<<<<<<<<ARR2                 =====================HOX2a_HOX2a       <---------MYB46(3)          <<<<<<<<<ARR1              --------->HSFB2a(2) ------>ZmHOX2a(1)     ------>ZmHOX2a(2)      <---------KAN4(2)              <---------HSFB2a(2)<---------LBD16       <------ZmHOX2a(2)   tagaagagaacaatcgtacgagaagaagagggaggctgtctaggaggcgcagaaagatcctggaggatactgtagtgacgatcgttcaagctccgaggtt  25615600                       ------>NtERF2                       --------->LBD16                      --------->ANAC46         <---------At4g35610                     <---------LBD16        --------->LBD16                   <-----------GT1         <---------HSFB2a(2)                <---------ARR14(2)         --------->HSFB2a(2)               <---------YAB1        <---------ANAC58                  <---------LBD16              ------>ZmHOX2a(2)        <---------ANAC58         --------->REM1(1)              --------->LBD16 <---------YAB1 -TOE2(2)       --------->ARR14(2)    <---------MYB52(1)       --------->HSFB2a(2) -TOE1(2)     <---------RAP2.6(3)<---------ALFIN1              <---------HSFB2a(2)   ttcttctatggctggccgtattttccgccattgctacaccgttttctggagatgagtttgtgtttcccgatgatcgattgtgataaatggagagaagagt  25615700                                                 <---------ANAC58                                                 <---------ANAC58                                                ---------->ID1                  --------->LBD16     <                                            <---------ANAC58                --------->ARR14(2)      <                                      --------->LBD16                       <---------ARR14(2)      -                                      ------>NtERF2                 <---------GLK1(1)               -                                 <---------GLK1(1)<----------DOF2   --------->GLK1(1)             <--      >>>>>>>>>TBF1            *TSS <---------LBD16                <---------ARR11(3)             ---   >>>>>>>>>TBF1          --------->ATHB12  <---------ANAC58       --------->ARR11(3)             ---   gagaagaagaagaagatgatgaagagaatgtttggaatcccgccttccttggcttttttgaattttgaagatttctcagttccgagacaaatggctcttg  25615800                                                                                          --------->AHL20(1)                                                                <----------DOF2--------->YAB1       <                                                                <---------DAG2<---------AHL20(2)   <- ---------ZAT18                                               ----------------->AGL1      <---------AHL20(1) ---------At4g35610                      <----------ID1       ----------------->AG      <---------AHL20(2) -------->ZAT18                     --------->REM1(1)        <-----------------AGL1     <---------AHL20(1) -------->At4g35610                ------>MYB46(1)          <-----------GT1   <---------YAB1      <-- -------ZAT18                      ------>MYB83         <---------AHL20(2)   --------->AHL20(2)   <-- ------>ZAT14                    --------->TOE1(2)      --------->AHL20(2)  --------->CCA1(2)     <-- ------>ZAT18                 <-----------GT1      <---------YAB1     <-----------HVH21--------->YAB1   tgcgctctctctctctctctctctctcacatttaacctacaatacaacaaaatatgattttatttcctttttggtcagatataatagtataatatttttt  25615900                                                                                                  <--                                            <---------DAG2                                        <--                                            <----------DOF2                                       ---                                        --------->ZAT18                                           ---         <------------CBF               <---------ZAT18                                           <--  <------MYB46(1)                       <---------ZAT14                                          ----  <------MYB83                      --------------->AtSPL3                                       <--- <---------AtMYB61                  <---------------AtSPL8           <-----------GT1           ------ ---------MYB52(1)                  --------->ALFIN1  --------->ANAC46   --------->ANAC58   --------- ------GAMYB                --------->TOE1(2)         --------->ANAC58   --------->ANAC46   --------- -------ANAC58             <---------HSFB2a(1)        --------->ANAC58   --------->ANAC58   --------- -------ANAC46             --------->HSFB2a(1)    <-----------GT1--------->ARR11(3)         --------- -------ANAC58  ----------->GT1     --------------->AtSPL8       <---------ARR11(3)<---------At4g35610   gcgttggtctgaattgtttagtaacaagaacatccgatgtggtacactttttttacaagtcatttcagatattacaagtcatttcagataatacaagtaa  25616000     ------------>CBF -------ICU4                                                      --------->ARR14(2) ------ATHB1                                                      <---------ARR14(2) ------>ATHB51                                          <----------DOF2 ------>AHL20(2)                                   <-------GAMYB --------->GLK1(1)               ---- -------AHL20(2)                                  <---------MYB46(3)                            <---- ----->ICU4                                      <---------DEAR3(1)            <---------ICU4   ----- ------ATHB51                                   --------->ATERF1(1)  <---------RAP2.6(2)       ------ --->YAB1        --------->ATHB12               <------NtERF2    <---------HSFB2a(1)           <----- >ANAC58        <---------YAB1                <---------DEAR3(1) <---------GLK1(1)          --------- >ANAC55(1)     --------->ICU4   --------->MYB52(1)--------->ATERF1(1)------>NtERF2 <---------ANAC58 >ANAC46  --------->ARR11(3)     ------------>AtMYB77   <---------DAG2--------->LBD16<----------DOF2 >ANAC58  <---------ARR11(3)    ----------->HVH21<---------RAP2.6(2)<---------LBD16 <---------ANAC58-   taatttgttcaatatctcatgatggaaccaaaaaatgacggtttgatggaggcggtcgctttttggaatttccggctctattcatggctttggatgatcg  25616100                                                                                               ------                                      --------->ALFIN1                                   ------------                                     ------->PIF5                                        <----------- --------->DAG2                      <-------PIF5     <-----------GT1                 <---------ARR14(2) ----->LBD16                        <---------ANAC46<---------ANAC58                  --------->ARR14(2) -----HSFB2a(2)            --------->At4g35610      <---------ANAC58               <---------------AGL15 ---->HSFB2a(2)            <---------At4g35610      --------->ANAC55(2)            --------------->AGL15 >ZmHOX2a(2)               <---------ZAT2           <---------ANAC55(2)           ----------------->AGL3 ----LBD16    ----------->GT1  ------->PIF5   <-------TEIL                        <-----------------AGL2 >ATHB12   --------->GLK1(2)   <-------PIF5----------->GT1     ----------->GT1    ----------------->AGL2 --------->DOF2          <---------ZAT18 <---------ANAC46   --------->TOE2(3)   ------>ZmHOX2a(1)   ggaaaaggaagagaatgtgtgaaattgtgagctcgtggacgtggagggttcattacttactaccttggtaaatacttggctccttccatatacagtacaa  25616200  Previous    Next  AGI:  At5g63950.1    Description:  CHR24 (chromatin remodeling 24); ATP binding / DNA binding / helicase. similar to CHR8 (chromatin remodeling 8), ATP binding / DNA binding / helicase [Arabidopsis thaliana] (TAIR:AT2G18760.1); similar to SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp. patens] (GB:EDQ68757.1); similar to hypothetical protein OsI_017406 [Oryza sativa (indica cultivar-group)] (GB:EAY96173.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68520.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like heli Range:  from: 25609182    to: 25615731    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g63952.1    Description:  unknown protein Range:  from: 25616019    to: 25616171    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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