Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      --------->TOE2(3)    <---------DAG2                                                                    <----------DOF2    --------->TOE1(3)            <----------ID1                               <-----------GT1 ---------WRKY12          ----------->GT1                                    <-----------GT1 ---------WRKY38(1)      <---------HSFB2a(2)                            <---------AHL20(1) ---------WRKY45         --------->HSFB2a(2)                            <---------AHL20(2) ------->WRKY18(1)  <----------DOF2  ---------->DOF2                    --------->AHL20(2) ->ATHB12    ---------->DOF2   ---------->DOF2 <-----------HVH21  <----------DOF2<----------DOF2  <--   ggtcaaccttatttcaaaagtgatttactggaaaaaagacaaaggagattgtcagaagttttggtattctttattttattttccttttcttttcgaaatt  25025900                                                                    <----------DOF2                                                                   ------>ZmHOX2a(2)                                                                   <---------HSFB2a(1)                                                                   --------->HSFB2a(1)                                                                 <---------ARR14(2)                                                                 <-----------ARR10                                                                 <---------ARR11(3)                                                                 <---------AGP1                                                                 --------->ARR14(2)                                                             ------->PIF5                                                            <---------bZIP60(2)                                                            <---------ANAC58                                                            ==========================bZIP_DOF                                                            <---------ANAC46                                                            <---------ANAC58                                                            <---------TGA1a                              --------->AHL20(2)            --------->TGA1a                              --------->AHL20(1)            =========================================                              <---------AHL20(1)            ===================bZIP_DOF                              <---------AHL20(2)            <---------O2----------------->AGL1                   <-----------GT1                         ------->TEIL<-----------------AGL1   --------->AHL20(2)   <---------MYB52(1)  <---------AHL20(1)   --------->ARR11(3)   <---------AHL20(2) <---------ANAC46      --------->AHL20(2)  <---------CCA1(2)    <---------ICU4 <----------DOF2  <---------GLK1(1)         <---------AHL20(2)--------->ALFIN1      <---------ATHB12 ---------GT1     --------->GLK1(1)        --------->AHL20(2)<-------PIF5  ---------->DOF2 <---------   tcactttaatttttcttcgtatttccgtttattttattacaaatattaaatttccaagacggacgtggatctttccctaaaccgaaatcaatactttgat  25026000         --------->YAB1        <---------YAB1      --------->YAB1      <---------ICU4      <--------HAHB4                                                                        <--------      -------->HAHB4                                                                       <---------      -------->ATHB1                ------>ZmHOX2a(1)                                 <---------AHL20(1)      <---------AHL20(2)           --------->TOE1(3)                                  --------->AHL20(1)     <---------ATHB51              --------->TOE2(3)             <---------ETT(2)    <---------AHL20(2)     <---------YAB1           <---------AHL20(2)              ------->GAMYB  --------->AHL20(2)     --------->ICU4          --------->AHL20(2)   <---------AHL20(2)         <---------AHL20(2) =bZIP_DOF<---------AHL20(2) <---------AHL20(2)  --------->AHL20(2)   ----------->HVH21  <---------AHL20(2) -DOF2--------->ATHB51   --------->AHL20(2)   ------>ZmHOX2a(1)  --------->ETT(2)--------->AHL20(2)<-   ttttgtaattattatatcgattttcaactaattaaatccttaatattcctattaaataatacaactgtctacatgacatttttttatatatattatcgtt  25026100                        --------->AHL20(2)     ------>ZmHOX2a(1)  <---------AHL20(2)                                           <---------ANAC58     --------->LBD16   <---------AHL20(2)                                            <---------ANAC58   <---------LBD16 <---------AHL20(1)                                     <-----------GT1 -TOE2(3)          <---------AHL20(2)    --------->TOE2(3)                --------->ARR11(3) --GT1      <-----------GT1   <----------DOF2     <-------TEIL            <---------ARR11(3) ---------DOF2     --------->AHL20(2)    --------->TOE1(3)       ----------->GT1<----------DOF2<-----   tcttttcctgaaattttccattttatttatttctttgcaaaaaccctaaaaattcattcgtctaagagagaaaaattatcttctttttcttgtgaatttt  25026200                    <---------AHL20(2)                                                  <<<<<<<<<MYB2            <---------ANAC46                                                          <------MYB46(1)            <---------ANAC58                                                          <---------MYB46(3)            <---------AtLEC2                                                          <------MYB83            <---------ANAC58                                                         <---------AtMYB61        <------------CBF                                                            <--------P   ----      <---------ARR14(2)                                                          <-----------RAV1(1)      <---------ARR11(3)            <---------TOE1(3)                             --------->ALFIN1      --------->ARR14(2)     <---------ARR14(2)      ---------->DOF2          <---------ZAT14 <------      --------->ARR11(3) <---------LBD16         --------------------->WRI1--------->At4g35610-------  <---------LBD16   --------->AHL20(2)           <------------CBF          <---------At4g35610<------ ----AHL20(2)      --------->ICU4   <---------TOE2(3)*TSS   --------->ARR11(3)--------->ZAT14 -------   tttttggggatattgcatgtaattttttggggatttttgaggtttaatctccattgaaagaagctctggcatttctctgctacagtgttggttttcagct  25026300                                                                    <---------At4g35610                                                              <----------DOF2     ----------->GT1                                       ---------->ID1 <---------ARR14(2)                                   <----------DOF2 ----->At4g35610     <---------HSFB2a(2)             ------>ZmHOX2a(2)                       <------- ---ZAT2    --------->DAG2                           ================HOX2a_HOX2a         ---------->ID1 -->At4g35610        --------->HSFB2a(2)           --------->ARR11(3)            --------->ARR11(3) ---At4g35610----------->GT1                   <----------DOF2------>ZmHOX2a(1)  <---------ARR11(3) -->ZAT2   ---------->DOF2        --------->YAB1   <---------ARR11(3)           <---------CCA1(2)   gcagaattggtgaaaaagtaaatctagaaactgtaatcaaatttctctgctttgatctttggtccttttgagctactatttcatatctcttgttcctttt  25026400                  ---------->DOF2              <---------YAB1                                --------->At4g35610            <---------ICU4          ---------->DOF2   <<<<<<<<<TBF1         <---------AHL20(2)            --------->YAB1   ----------->GT1 <----------DOF2<---------At4g35610                     -           <---------YAB1   >>>>>>>>>TBF1   --------->TOE1(3)      --------->DAG2                   - ---DOF2   --------->ICU4>>>>>>>>>TBF1      --------->TOE2(3)     ---------->DOF2            --------   attgttcttagttattattacaaagaagaagaagaaaaaaaagaaacctttacttcttcttcatctgaaaaagctcattttttttttttttggaatcaga  25026500               --------->At4g35610               <---------At4g35610          <---------LBD16 <---------ANAC46                                                                                  <- <------MYB83<------ZmHOX2a(1)            --------->ICU4                                 <-----------HVH21 <------MYB46(1)                    <---------LBD16                                     --------->bZIP60(1) ----------->GT1                --------->ICU4                   ----------->GT1        <---------bZIP60(1) -------->MYB46(2)         --------->ANAC55(2)                  --------->DAG2       <---------PCF2<- -------->MYB111(2)      <---------AHL20(2)   <---------ZAT6  ---------->DOF2        <---------ANAC46 ->YAB1   <-----------RAV1(2)<---------AHL20(2)            <------ZmHOX2a(1)      --------->ALFIN1---   gtttggtgaatttcaggagcagagtatttaagtaattttggggaattagtgagaaaatggaggagaaaggtgaaataagtccaagtggggtcgtcacagt  25026600               <---------MYB46(3)              <---------AtMYB61            <----------DOF2         ------->TEIL      <---------REM1(1)    <---------At4g35610                                                    ------->GAMYB    --------->At4g35610                                           --------->PCF2                  <-- --------TOE1(3)                                            <---------ANAC58           ------>ZmHOX2a(1) --------TOE2(3)                                    <-----------GT1     --------->MYB52(1)  <-------- ------>MYB52(1)                           --------->TOE2(3)<---------ANAC58  --------->MYB52(2)-----   taagggagatgaagctttggttccaagaacagagtttcaacaaaaccctagttttctccaattcgtgagtcccacaacggtagtgactcctctccctcct  25026700                             --------->AtMYB61                             <---------ALFIN1                             ------->GAMYB                               --------->TOE1(2)                            <---------MYB111(2)                          ----------->HVH21                            --------->MYB46(3)                          ------>ZmHOX2a(2)                            <---------MYB55(2)                          ==========================HOX2a_HOX2a                            <---------MYB52(2)                          =============================                           ------>MYB83                                 --------->DEAR3(2)                           -------->P                                  <------ZmHOX2a(2)                           ------>MYB46(1)                             --------->CCA1(2)                          --------->ANAC46                             ===========================HOX2a_HOX2a                          --------->MYB55(1)                           ==============================                         --------->MYB46(3)                           --------->AGP1                         <---------MYB111(2)                          <---------ARR14(2)                     <---------MYB52(1)                             ----------->ARR10                  <---------LBD16                                 <------ZmHOX2a(2)                --------->ARR14(2)                               <---------ARR14(2)                <---------ARR14(2)       =====================================HOX2a_HOX2a    --------->ARR14(2)   <---------MYB59 ------>ZmHOX2a(1)       --------->ARR14(2)    <---------ARR14(2)   <---------MYB46(2)                    --------->LBD16   <---------At4g35610   <---------MYB111(1)                  ------->GAMYB   <---------ZAT2 <------NtERF2          ================================HOX2a_HOX2a   --------->ZAT2------>NtERF2         =======================RAV<-----------HVH21   --------->At4g35610  --------->DEAR3(2)                   <---------LBD16 <---------ALFIN1XXXXXXXXXXXXXXXXXXXX>MIR845A     <---------ALFIN1================================HOX2a_HOX2a --------->MYB46(3) --------->LBD16    ----------->RAV1(2)  -------->P--------->ARR14(2) -------ALFIN1 <---------At4g35610----------->HVH21         --------->MYB52(1) -ALFIN1      <---------ATERF1(1)<-----------HVH21----------->RAV1(1)--------->At4g35610   <------ZmHOX2a(1) ->ZmHOX2a(1)<---------DEAR3(1)  --------->At5g28300      --------->MYB46(3)    ---------->DOF2   ccaccagctccgtcttcggctccggtaccaaccaccgtgactcctggctcagccacagcatcaaccggatcagatccgacgaaaaagaagagaggaagac  25026800  Previous    Next  AGI:  At5g62260.1    Description:  DNA binding. similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT4G25320.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77019.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49742.1); contains InterPro domain Protein of unknown function DUF296 (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding (InterPro:IPR000637) Range:  from: 25026253    to: 25028814    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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