Home
Tools
- Search
- Colocalization
- Gene Analysis
- Gene Identification
- Small RNA Targets
- MicroRNA Targets
Description
Documentation
Citations
Downloads
Publications
History
Contact
Links
Disclaimer
For complete usage of AthaMap please enable JavaScript in the settings of your browser!
Search
Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
<---------
ICU4
<---------
ARR11(3)
--------->
ARR11(3)
--------->
YAB1
<---------
YAB1
<--------
HAHB4
<--------
<---------
ICU4
<--------
--------->
ATHB51
<--------
<--------
ATHB1
<--------
--------->
At4g35610
<--------
<---------
At4g35610
<---------
AHL20(2)
--------->
ZAT18
-------->
HAHB4
<--------
<---------
ZAT18
<---------
ICU4
<---------
MYB52(1)
--------->
ZAT14
--------->
YAB1
--------->
LBD16
<---------
YAB1
--------->
ATHB51
--------->
YAB1
<---------
ANAC55(2)
---->
MYB46(1)
<---------
TOE2(3)
<---------
ZAT14
--------->
ICU4
--------->
HSFB2a(2)
---->
MYB83
<---------
AHL20(2)
--------->
ATHB12
--------->
YAB1
<-----------
GT1
<-
------>
ANAC46
--------->
YAB1
<---------------
AGL15
--------->
AHL20(2)
--------->
ANAC46
----->
TOE1(2)
--------->
AHL20(2)
--------------->
AGL15
<---------
ATHB12
<---------
HSFB2a(2)
------>
RAV1(2)
<---------
AHL20(2)
<-----------------
AGL3
--------->
ICU4
--------->
ANAC55(2)
->
TEIL
<-----------
GT1
---------->
DOF2
<---------
YAB1
--------->
REM1(1)
<---------
ANAC58
-----
GT1
<----------
DOF2
--------->
AHL20(2)
<-----------------
AGL2
<---------
ATHB51
<---------
ANAC58
ctgccacgattgtcttttttctcaattatataaataaaggttgaaatactataattggtgcacagctacaataattatgatatttacttccgtaacgtga
24981500
<---------
ARR11(3)
--------->
ARR11(3)
<---------
AHL20(2)
--------->
CCA1(1)
--------->
AHL20(2)
-
ANAC58
<---------
AHL20(2)
-
ANAC55(2)
--------->
AHL20(1)
-
ANAC58
<---------
AHL20(1)
--------->
ZAT18
-
ANAC55(1)
--------->
AHL20(2)
--------->
ZAT14
<-----------
GT1
-
ANAC46
--------->
AHL20(2)
<---------
ZAT14
<---------
ICU4
-
O2
--------->
RVE1(1)
--------->
AHL20(2)
----------->
GT1
------->
TEIL
---
-----
ZmHOX2a(1)
<-----------
GT1
--------------->
AtSPL8
----------->
GT1
<---------
TOE1(2)
<--
aggagaaatatctaataaattacatttttatataaaaactgtactaacttacttaaaatgagagtgaaaatactaaatcgtatgaatattacagtagtat
24981600
<-----------
GT1
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(1)
--------->
AHL20(2)
<--
<---------
AHL20(1)
<---------
AHL20(2)
<------
--------->
AHL20(2)
<---------
AHL20(2)
--------->
ANAC46
<---------
ATHB12
<---------
AHL20(2)
--------->
AHL20(2)
--------->
ARR11(3)
--------->
WOX13(1)
<---------
YAB1
--------->
AHL20(2)
<---------
ARR11(3)
<---------
AHL20(2)
<-----------
GT1
<---------
AHL20(2)
--------------->
AGL15
--------->
AHL20(2)
------>
AHL20(2)
<---------
AHL20(2)
=======================================================
-------
AHL20(2)
--------->
AHL20(2)
----------------->
AGL3
--------->
AHL20(2)
ttaattaccattttattgaaatttgatatatatatatatatatatataaccatatattggtatatacacacatttttgttgacaaataaatcaattctta
24981700
--------->
LBD16
--------->
HSFB2a(2)
<---------
HSFB2a(2)
--------------->
AGL15
--------------->
AGL15
-
<---------
MYB46(3)
<-----------------
AGL1
<-
<---------
ANAC58
<-----------------
AGL3
--
<-------
GAMYB
<---------
ANAC58
<-
<---------
ANAC58
<---------
ANAC46
--
<---------
MYB46(3)
--------->
YAB1
<---------------
AGL15
------>
ZmHOX2a(1)
--
<------
MYB83
--------->
AHL20(2)
<-----------------
AG
<---------
YAB1
----
<---------
AtMYB61
--------->
AHL20(1)
<---------
ANAC58
<-----------
GT1
--------->
ALFIN1
--------->
MYB59
<---------
AHL20(2)
<-----------------
AGL2
<----------
DOF2
<------
ZmHOX2a(1)
---------
GT1
=====================================================
MADS_MADS
<-----------
RAV1(1)
---
YAB1
<------
MYB46(1)
--------->
AHL20(2)
------>
ZmHOX2a(1)
--------->
YAB1
<---------
ANAC46
=================================
MADS_MADS
<-----------
GT1
<---------
At4g35610
--------->
ALFIN1
taaccaagtttggttgttttccagataaataaaataaaaacaagaattatcctgtttcttgttttggcatctaattatccttttgtatgtggggaggaga
24981800
--------->
YAB1
--------->
YAB1
--------->
AHL20(2)
<---------
ICU4
--------->
AHL20(2)
<---------
YAB1
----------->
HVH21
-------->
CCA1(2)
<---------
YAB1
<---------
AHL20(2)
--------
ARR14(2)
<---------
AHL20(2)
<---------
AHL20(1)
------->
ARR11(3)
<---------
ICU4
--------->
AHL20(1)
--------
ARR11(3)
--------->
YAB1
<---------
YAB1
<---------
ICU4
<------------
CBF
------->
ARR14(2)
--------->
ANAC55(2)
--------->
YAB1
--------->
AHL20(2)
------->
ARR11(1)
--------->
ANAC46
--------->
YAB1
--------->
bZIP60(1)
------->
ARR10
<---------
AHL20(2)
--------->
ICU4
----------->
GT1
<---------
bZIP60(1)
-------
agatatggacacaaatttaaaatactctatacataatttttattattatcaagaacagaaatgaaaataagaatggcatcattttattgtgacccataaa
24981900
-
-
<--
---
<---------
YAB1
--------->
KAN4(2)
----------->
GT1
--------->
TOE2(3)
<------
ZmHOX2a(2)
----------->
GT1
--------->
YAB1
================
--------->
DAG2
<---------
HSFB2a(2)
--------->
ARR11(3)
---------->
DOF2
=================================================================
---------->
DOF2
<---------------
AGL15
<---------
ARR11(3)
--->
DOF2
----------->
GT1
*
TSS
--------->
HSFB2a(2)
<---------
TOE2(3)
----------->
HVH21
---
acaaaaaagaaaagtgataaaacat
aaaaaaaaactttctataaaaaaaaaaaacattaagaaacttgccccttccttctctcacagatcattctagggc
24982000
<----------
DOF2
------>
MYB83
<----------
DOF2
------>
ZmHOX2a(2)
<<<<<<<
GRF7
------>
MYB46(1)
----------------->
AG
<---------
ARR11(3)
----->
ZmHOX2a(1)
------>
ZmHOX2a(1)
------>
ZmHOX2a(1)
==============
HOX2a_HOX2a
---------->
HVH21
---------->
ID1
=========================
HOX2a_HOX2a
-------
At4g35610
<----------
DOF2
--------->
ARR11(3)
--------->
YAB1
------>
At4g35610
<---------
ARR11(3)
<---------
ARR11(1)
--------->
YAB1
------
======
HOX2a_HOX2a
<---------
DAG2
<---------
CCA1(2)
<---------
ATHB12
------>
ZmHOX2a(1)
================================================
MADS_MADS
<----------
DOF2
<---------
ATHB12
<-----
-------->
RAV1(2)
--------->
ARR11(3)
<---------
GLK1(2)
--------->
TOE2(3)
--------->
ARR11(3)
tcctgacagaaaaaccaaataccttttcctctttccatttttgtagaatttcaaatctttctttcctcaatctttcacaatgatcttttcctgtgaagtt
24982100
<---------
DDF1
------>
ZmHOX2a(2)
------->
GAMYB
<------
ZmHOX2a(2)
>>>>>>>>>>
DREB1C
<---------
GLK1(1)
>>>>>>>>>>
DREB1B
--------->
GLK1(1)
>>>>>>>>>>
DREB1A
<---------
ARR11(3)
--------->
At1g77200
--------->
ARR11(3)
--------->
DREB2C(2)
xxxxxxxxxxxxxx
<-----------
GT1
<---------
CCA1(2)
>>>>>>>>>>
AtTINY2
<-----------
HVH21
--------->
AHL20(2)
<---------
CCA1(2)
>>>>>>>>>>
DREB2A
--------->
ARR14(2)
--->
ARR11(3)
<---------
ANAC58
--------->
DEAR3(2)
<---------
ARR14(2)
----
ARR11(3)
<----------
DOF2
<---------
ANAC58
<-----------
GT1
<-----------------
AGL1
<
cttgattttaaatcaccctttcttcactactagcttatctcttcttcaattttctctaccgacattcaattactctccctattcggtgagatctctctct
24982200
<-----------
RAV1(1)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
ARR14(3)
<---------
ARR14(2)
<---------
AGP1
--------->
ARR14(2)
--------->
ARR14(3)
--------->
AGP1
--------->
ATHB12
--------->
ARR11(3)
<---------
YAB1
<---------
TOE2(3)
<---------
ARR11(3)
--------->
ANAC58
--------->
YAB1
<---------
TOE1(3)
<---------
CCA1(2)
----------
<---------
ICU4
<---------
ANAC58
<----------
DOF2
--------->
ANAC58
<----------
DOF2
<-----------
HVH21
<---------
ICU4
--------->
ANAC58
xx>
smallRNA(i)
<---------
YAB1
<---------
ANAC46
--------->
YAB1
--------->
ANAC58
----------
DOF2
--------->
ICU4
<---------
ANAC58
<---------
ATHB12
---------->
DOF2
ctcttttatgactttggttatgatgactggtcactggcttgtttagggtttcaatctttacagatcttgtggcagaaaaaatcaagtcaaagcaagaaaa
24982300
<---------
O2
--------->
TGA1a
=================
bZIP_DOF
================================================
bZIP_DOF
<---------
ANAC55(2)
======================================
MYC_MYB
--------->
ANAC55(2)
--------->
O2
--------->
ANAC58
---------->
DOF2
----------->
GT1
--------->
MYB52(1)
<-------
GAMYB
--------->
CCA1(2)
--------->
ANAC58
---------->
DOF2
--------->
MYB52(2)
---
->
GT1
<------
ZmHOX2a(1)
--------->
ANAC46
<----------
DOF2
<---------
MYB46(3)
<--
atggttagaggaaagatagagatgaagaaaatagaaaacgcaacgagtagacaagtgactttctcaaaaagaagaaatggtttgttgaagaaagcttatg
24982400
Previous
Next
AGI:
At5g62165.1
Description:
AGL42 (AGAMOUS LIKE 42); transcription factor. similar to AGL20 (AGAMOUS-LIKE 20), transcription factor [Arabidopsis thaliana] (TAIR:AT2G45660.1); similar to MADS-box protein [Vitis vinifera] (GB:ABF56527.1); similar to SOC1 [Glycine max] (GB:ABC75835.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487)
Range:
from: 24981926
to: 24985746
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
printer-friendly version