AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                                                                             <---------ICU4
                                                                           <---------ARR11(3)
                                                                           --------->ARR11(3)
                                                                          --------->YAB1
                                                                         <---------YAB1
                                                                    <--------HAHB4         <--------
                                                                    <---------ICU4         <--------
                                                                    --------->ATHB51       <--------
                                                                    <--------ATHB1         <--------
                                                            --------->At4g35610            <--------
                                                            <---------At4g35610 <---------AHL20(2)
                                                       --------->ZAT18 -------->HAHB4      <--------
                                                       <---------ZAT18 <---------ICU4   <---------MYB52(1)
                                                       --------->ZAT14 --------->YAB1  --------->LBD16
  <---------YAB1                                --------->ATHB51    --------->YAB1    <---------ANAC55(2)
---->MYB46(1)                    <---------TOE2(3)     <---------ZAT14--------->ICU4  --------->HSFB2a(2)
---->MYB83                <---------AHL20(2)    --------->ATHB12 --------->YAB1 <-----------GT1   <-
------>ANAC46         --------->YAB1         <---------------AGL15 --------->AHL20(2) --------->ANAC46
----->TOE1(2)         --------->AHL20(2)     --------------->AGL15 <---------ATHB12   <---------HSFB2a(2)
------>RAV1(2)        <---------AHL20(2)    <-----------------AGL3 --------->ICU4     --------->ANAC55(2)
->TEIL        <-----------GT1  ---------->DOF2 <---------YAB1   --------->REM1(1)     <---------ANAC58
-----GT1  <----------DOF2 --------->AHL20(2)<-----------------AGL2 <---------ATHB51   <---------ANAC58
 
ctgccacgattgtcttttttctcaattatataaataaaggttgaaatactataattggtgcacagctacaataattatgatatttacttccgtaacgtga  24981500
     <---------ARR11(3)
     --------->ARR11(3)     <---------AHL20(2)
    --------->CCA1(1)   --------->AHL20(2)
-ANAC58     <---------AHL20(2)
-ANAC55(2)  --------->AHL20(1)
-ANAC58     <---------AHL20(1)      --------->ZAT18
-ANAC55(1)  --------->AHL20(2)      --------->ZAT14                                  <-----------GT1
-ANAC46    --------->AHL20(2)       <---------ZAT14                               <---------ICU4
-O2 --------->RVE1(1) --------->AHL20(2)                    ----------->GT1      ------->TEIL    ---
-----ZmHOX2a(1) <-----------GT1   --------------->AtSPL8  ----------->GT1    <---------TOE1(2)   <--
 
aggagaaatatctaataaattacatttttatataaaaactgtactaacttacttaaaatgagagtgaaaatactaaatcgtatgaatattacagtagtat  24981600
                                           <-----------GT1
                                      --------->AHL20(2)
                                      <---------AHL20(2)
                                    --------->AHL20(2)
                                    <---------AHL20(2)
                                  <---------AHL20(2)
                                  --------->AHL20(2)
        --------->AHL20(1)      --------->AHL20(2)                                               <--
        <---------AHL20(1)      <---------AHL20(2)                                           <------
        --------->AHL20(2)    <---------AHL20(2)                --------->ANAC46      <---------ATHB12
        <---------AHL20(2)    --------->AHL20(2) --------->ARR11(3)                 --------->WOX13(1)
   <---------YAB1           --------->AHL20(2)   <---------ARR11(3)                <---------AHL20(2)
 <-----------GT1            <---------AHL20(2)--------------->AGL15                --------->AHL20(2)
------>AHL20(2)           <---------AHL20(2) =======================================================
-------AHL20(2)           --------->AHL20(2) ----------------->AGL3               --------->AHL20(2)
 
ttaattaccattttattgaaatttgatatatatatatatatatatataaccatatattggtatatacacacatttttgttgacaaataaatcaattctta  24981700
                  --------->LBD16
                 --------->HSFB2a(2)
                 <---------HSFB2a(2)
                 --------------->AGL15                --------------->AGL15                        -
          <---------MYB46(3)                         <-----------------AGL1                       <-
        <---------ANAC58                             <-----------------AGL3                       --
        <-------GAMYB                                <---------ANAC58                             <-
        <---------ANAC58                             <---------ANAC46                             --
       <---------MYB46(3)               --------->YAB1<---------------AGL15 ------>ZmHOX2a(1)     --
       <------MYB83           --------->AHL20(2)     <-----------------AG<---------YAB1         ----
      <---------AtMYB61   --------->AHL20(1)         <---------ANAC58   <-----------GT1   --------->ALFIN1
      --------->MYB59     <---------AHL20(2)         <-----------------AGL2 <----------DOF2 <------ZmHOX2a(1)
---------GT1     =====================================================MADS_MADS    <-----------RAV1(1)
---YAB1<------MYB46(1)    --------->AHL20(2)    ------>ZmHOX2a(1)      --------->YAB1   <---------ANAC46
=================================MADS_MADS  <-----------GT1      <---------At4g35610 --------->ALFIN1
 
taaccaagtttggttgttttccagataaataaaataaaaacaagaattatcctgtttcttgttttggcatctaattatccttttgtatgtggggaggaga  24981800
                                          --------->YAB1
                                       --------->YAB1
              --------->AHL20(2)       <---------ICU4
            --------->AHL20(2)        <---------YAB1                                 ----------->HVH21
-------->CCA1(2)                   <---------YAB1                              <---------AHL20(2)
--------ARR14(2)                   <---------AHL20(2)                          <---------AHL20(1)
------->ARR11(3)                 <---------ICU4                                --------->AHL20(1)
--------ARR11(3)           --------->YAB1<---------YAB1            <---------ICU4<------------CBF
------->ARR14(2)           --------->ANAC55(2)                  --------->YAB1 --------->AHL20(2)
------->ARR11(1)           --------->ANAC46               --------->YAB1--------->bZIP60(1)
------->ARR10<---------AHL20(2) --------->ICU4           ----------->GT1<---------bZIP60(1)  -------
 
agatatggacacaaatttaaaatactctatacataatttttattattatcaagaacagaaatgaaaataagaatggcatcattttattgtgacccataaa  24981900
                                                                                                   -
                                                                                                   -
                                                                                                 <--
                                                                                                 ---
                                                                                       <---------YAB1
                                                                                      --------->KAN4(2)
           ----------->GT1                         --------->TOE2(3)                <------ZmHOX2a(2)
          ----------->GT1             --------->YAB1                                ================
       --------->DAG2              <---------HSFB2a(2)                             --------->ARR11(3)
      ---------->DOF2              =================================================================
 ---------->DOF2                   <---------------AGL15                           <---------ARR11(3)
--->DOF2----------->GT1  *TSS      --------->HSFB2a(2) <---------TOE2(3)     ----------->HVH21   ---
 
acaaaaaagaaaagtgataaaacataaaaaaaaactttctataaaaaaaaaaaacattaagaaacttgccccttccttctctcacagatcattctagggc  24982000
                                                                                 <----------DOF2
             ------>MYB83  <----------DOF2                                      ------>ZmHOX2a(2)
 <<<<<<<GRF7 ------>MYB46(1)  ----------------->AG                            <---------ARR11(3)
----->ZmHOX2a(1)         ------>ZmHOX2a(1)                    ------>ZmHOX2a(1) ==============HOX2a_HOX2a
---------->HVH21      ---------->ID1                          =========================HOX2a_HOX2a
-------At4g35610   <----------DOF2                --------->ARR11(3)         --------->YAB1
------>At4g35610<---------ARR11(3)                <---------ARR11(1)   --------->YAB1         ------
======HOX2a_HOX2a <---------DAG2                 <---------CCA1(2)<---------ATHB12     ------>ZmHOX2a(1)
================================================MADS_MADS<----------DOF2    <---------ATHB12  <-----
-------->RAV1(2)--------->ARR11(3)        <---------GLK1(2)  --------->TOE2(3)--------->ARR11(3)
 
tcctgacagaaaaaccaaataccttttcctctttccatttttgtagaatttcaaatctttctttcctcaatctttcacaatgatcttttcctgtgaagtt  24982100
                                                        <---------DDF1                  ------>ZmHOX2a(2)
                                                       ------->GAMYB                   <------ZmHOX2a(2)
                                                       >>>>>>>>>>DREB1C                <---------GLK1(1)
                                                       >>>>>>>>>>DREB1B                --------->GLK1(1)
                                                       >>>>>>>>>>DREB1A               <---------ARR11(3)
                                                       --------->At1g77200            --------->ARR11(3)
                                                       --------->DREB2C(2)            xxxxxxxxxxxxxx
         <-----------GT1         <---------CCA1(2)     >>>>>>>>>>AtTINY2         <-----------HVH21
    --------->AHL20(2)         <---------CCA1(2)       >>>>>>>>>>DREB2A     --------->ARR14(2)
--->ARR11(3)                 <---------ANAC58         --------->DEAR3(2)    <---------ARR14(2)
----ARR11(3)  <----------DOF2<---------ANAC58  <-----------GT1          <-----------------AGL1     <
 
cttgattttaaatcaccctttcttcactactagcttatctcttcttcaattttctctaccgacattcaattactctccctattcggtgagatctctctct  24982200
                                                               <-----------RAV1(1)
                                                             ------>ZmHOX2a(2)
                                                            <------ZmHOX2a(2)
                                                           <---------ARR14(3)
                                                           <---------ARR14(2)
                                                           <---------AGP1
                                                           --------->ARR14(2)
                                                           --------->ARR14(3)
                                                           --------->AGP1
                    --------->ATHB12                       --------->ARR11(3)
                   <---------YAB1        <---------TOE2(3) <---------ARR11(3)             --------->ANAC58
                 --------->YAB1          <---------TOE1(3)<---------CCA1(2)               ----------
                 <---------ICU4  <---------ANAC58   <----------DOF2                       --------->ANAC58
        <----------DOF2  <-----------HVH21         <---------ICU4                     --------->ANAC58
xx>smallRNA(i)  <---------YAB1   <---------ANAC46  --------->YAB1                     --------->ANAC58
----------DOF2  --------->ICU4   <---------ANAC58 <---------ATHB12                  ---------->DOF2
 
ctcttttatgactttggttatgatgactggtcactggcttgtttagggtttcaatctttacagatcttgtggcagaaaaaatcaagtcaaagcaagaaaa  24982300
                                                 <---------O2
                                                 --------->TGA1a
                                                 =================bZIP_DOF
                                                 ================================================bZIP_DOF
                                                 <---------ANAC55(2)
                                                 ======================================MYC_MYB
                                                 --------->ANAC55(2)
                                                 --------->O2
                                  --------->ANAC58                                    ---------->DOF2
                     ----------->GT1 --------->MYB52(1)                        <-------GAMYB
            --------->CCA1(2)     --------->ANAC58             ---------->DOF2--------->MYB52(2) ---
->GT1 <------ZmHOX2a(1)           --------->ANAC46     <----------DOF2        <---------MYB46(3) <--
 
atggttagaggaaagatagagatgaagaaaatagaaaacgcaacgagtagacaagtgactttctcaaaaagaagaaatggtttgttgaagaaagcttatg  24982400
<- Previous    Next ->

AGI:  At5g62165.1   
Description:  AGL42 (AGAMOUS LIKE 42); transcription factor. similar to AGL20 (AGAMOUS-LIKE 20), transcription factor [Arabidopsis thaliana] (TAIR:AT2G45660.1); similar to MADS-box protein [Vitis vinifera] (GB:ABF56527.1); similar to SOC1 [Glycine max] (GB:ABC75835.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487)
Range:  from: 24981926    to: 24985746    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version