Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           ---------->DOF2     --------->AHL20(2)     <---------AHL20(2)    --------->AHL20(2)    <---------AHL20(2)     --------->TOE2(3)    --------->AHL20(1)   --------->AHL20(1) ---------AHL20(2)       <-----------ARR10         <------ZmHOX2a(2) ----->TOE2(3)           <---------AHL20(1)       <---------ARR11(3)               --------->AHL20(2) --->ARR11(3)            --------->ARR11(3)       --------->ARR11(3)               <---------AHL20(2) ----ARR11(3)            <---------ARR11(3)     ----------->ARR10       <----------DOF2 ---CCA1(2)             <---------CCA1(2)---------->DOF2                --------->TOE2(3)     -------   cttaaatttaataaagaaatattccaatatcttaaccagtactaaaagagaagatcagaaaatttcttataaaactttaatctaataaaatcatctacga  24975100                                                                     <----------DOF2                                                          --------->ARR11(3)                                                         <---------CCA1(2)                    <---------YAB1           --------->AHL20(2)<----------DOF2              <---------AHL20(2)           <----------DOF2<---------ARR11(3)                    <----           <---------AHL20(1)      --------->ANAC55(2) --------->ANAC55(2)                     ------           <---------ARR11(3)    <-----------GT1     <---------AHL20(2)                       -------      <---------ATHB12      <---------AHL20(2)    <---------ICU4  ---------->ID1  ---------->DOF2 -->ANAC46 --------->AHL20(1)    <---------AHL20(2)  <-----------GT1 <---------DAG2--------->DAG2  <-   ctctaccattcaatatttttttgttattgttttatttacatatttcttttaatatttacatatctcttttcctttttgctaaaaaaaagttggcataaaa  24975200                                 <---------ICU4                                 -------->ATHB1                                 <---------AHL20(2)                                 --------->ATHB51                                 -------->HAHB4                                 --------->ATHB12                                <---------YAB1                                <---------ATHB51                                --------->ICU4                             <---------AHL20(2)                   --------->ATHB12                             --------->AHL20(1)                --------->CCA1(2)                             --------->AHL20(2)               --------->ARR14(2)                         --------->AHL20(2)              <------ZmHOX2a(1)                         <---------AHL20(2)     --------->ICU4<---------ARR14(2)                        <---------AHL20(1)    <---------------AGL15                        --------->AHL20(1)   ----------------->AG<---------YAB1                        <---------AHL20(2)   ----------------->AGL3 -----ICU4              --------->AHL20(2)   ----------------->AGL1                    ---------->DOF2 --->ICU4          --------->AHL20(2)        <-----------------AGL2                ---------->DOF2<-- -->AHL20(2) ----------->GT1--------->AHL20(2)--------------->AGL15            ----------->GT1    --- ----------GT1     <---------AHL20(2)        <-----------------AGL3        <------ZmHOX2a(1)---------   attactaaattttaagcgtaaaaaaataaaattaattattgtctattgccatttttggaggatggatatgatttggaggaatagttaaagaaagtgctaa  24975300                                     --------->ANAC58                                     --------->ANAC46                                 --------->ANAC46                                <---------LBD16                               <---------At5g28300                              <---------ALFIN1                            <-----------HVH21                        <---------WRKY18(1)                       --------->WRKY12                                  --------->ANAC46                       --------->WRKY45                              ----------->RAV1(1)                       ----------->HVH21                            --------->ANAC46     <---------MYB52(1)--------->WRKY38(1)                        --------->ANAC46                  <    <----------DOF2   --------->DOF5.7(2)                       ----------->RAV1(1)                 < -------ARR11(3)      <---------MYB52(1)                        ------>MYB83                        < ------>ARR11(3)   --------->MYB46(3)--------->ANAC58           ------>MYB46(1)                   --- -->GT1         --------->MYB46(3)  ---------->DOF2            --------->ANAC46           ---------->DOF2   aatctcctttagtgagtcacaaccgttgaccttcaccgcaaggcacaagagaccaagtctctaacccaacacaacacaaaacccataaactgaaaagact  24975400         <---------ANAC58       --------->ARR14(2)       <---------ARR14(2)      <---------CCA1(2)   <-----------------AGL1  ------>MYB83                          ----------->GT1  -------->P                           ------->TEIL   ------>MYB46(1)  ------>MYB46(1) ----------->TBP      <---------TOE2(2) <---------AHL20(2) ---------MYB59   <---------AHL20(2)--------->ANAC58  ------>MYB83 ---------MYB111(1)            --------->ANAC58     <---------MYB59*TSS ---------MYB46(2)--------->AHL20(2)--------->ANAC58--------->TOE2(3)    ---------->DOF2 ----->P <---------ANAC58      --------->ANAC58  <-----------GT1 <-------TEIL   ---------->DOF2   aacctaccctatcttgccatataaatccctctcgagcaacgcatgttaaataaacctaatttatacattcattctcaaagtcaaaaggagacagggagag  24975500                                                                                                  <--                                                                                                 <---                                                                                               <-----                                                                                               ------                                         ---------->DOF2           <---------ARR14(2)         <------                                        <---------AHL20(2)         --------->ARR14(2)  <------MYB46(1)                                        --------->AHL20(2)         <---------ARR11(3)  <------MYB83<-                                    <---------AHL20(2)            <---------GLK1(2) <---------ANAC58                  ---------->DOF2   --------->AHL20(2)  <-------TEIL<-------TEIL    <---------ANAC58<   agagagagagagagagaattcaaagcgttttttttttataaattaaaggcatgagaggttcaagaacaggttcttcagacatgagtgcttggtgttctgc  24975600  <---------ZAT6 -----GAMYB <----------DOF2 --------RAV1(1) ----At4g35610 --->At4g35610                                                                   ------->GAMYB<------ZmHOX2a(1) -----RAV1(1)  --------->YAB1                                                   --------->ANAC58 --------MYB52(1)                                                               --------->ANAC46 ---------ANAC46    <----------DOF2                                             --------->ANAC58    <   tgttgtgttattgtctttaatacttttgttatctgttcgtgaaaacaacgcttctaattcgattagaggttctcaattctcaacgaaaccttgtgaggag  24975700                                                   ------>NtERF2                                                   <---------ATERF1(1)                                                  --------->DEAR3(1)                    --------->ARR11(3)                                                  ----------->HVH21              --------->ARR14(2)                                                 <------NtERF2<---------ANAC46   <---------ARR14(2)                                                 ------>NtERF2<---------ANAC58  <---------CCA1(2)                                                 --------->ATERF1(1)            --------->GLK1(1)                                                 --------->ORA47(2)          --------->LBD16                                --------->AtMYB61--------->RAP2.3(1)        --------->ANAC58                             --------->ANAC46   <---------RAP2.3(1)         --------->ANAC58                          --------->ZAT14       --------->LBD16 --------->ALFIN1<---------GLK1(1)                         <-----------HVH21      <---------ATERF1(1)     --------->ARR14(2)          <------NtERF2 --------->ANAC46       <---------DEAR3(1)       <---------ARR14(2)  ---------        <---------DEAR3(1)<---------ZAT14      <---------RAP2.6(2) <---------ANAC46     <---------ARR11(3)      <-----------HVH21 --------->bZIP60(2)   <---------LBD16 <---------ANAC58 ---------->TaMYB80 -----------GT1 <------ZmHOX2a(1)  <---------DEAR3(1)    <---------MYB52(1)<---------LBD16------>ZmHOX2a(2)   atttacatcgtcggagaaggagagacacttcacaccatcggcgataaatgcggcgacccgtttatcgtggagcgaaacccgcatatccatgatcccgatg  24975800                                      --------------->AGL15                                      <---------------AGL15                                     <-----------------AGL1                                   <-----------GT1                               <----------DOF2                              <---------DAG2                         ============================HOX2a_HOX2a                         ------>ZmHOX2a(2)                        --------------->AtSPL8                                   <-----------GT1                        =============================HOX2a_HOX2a             <----------DOF2                        <------ZmHOX2a(2)                              --------->ANAC55(2)         --------->ARR11(3) ------->TEIL                               <---------ANAC55(2)         <---------ARR11(3) <---------TOE1(2)                         <-------TEIL  <----------DOF2  <----------DOF2      <---------ARR11(3)                           --------->ARR14(2)              < >LBD16--------->LBD16 --------->ARR11(3)     <------ZmHOX2a(1)     <---------ARR14(2)    <----------DOF2   atgtctttccaggtcttgttctcaagatcgcacctttttacttcaacaggaaattgtaagacatataacaaatacgtttcttttttctttctcttttctc  24975900                                                                     --------->AHL20(2)                              --------->TOE2(3)        --------->MYB52(1)                              --------->TOE1(3)<---------ARR11(3)    <---------AHL20(2)                         <---------DAG2        --------->AHL20(1)  --------->YAB1            XXXXXXXX           <---------YAB1<----------DOF2     ------->TEIL  <------ZmHOX2a(1)         ---------->DOF2 ----------DOF2     --------->YAB1       ------->TEIL  ---------->DOF2           --------->CCA1(2)   ttcttttaaaattttgtttgaagcatactttaccttaagtatgtatgtatatattactaaaggattcaaaaataaatacagagatttgaaagaaacagag  24976000  Previous    Next  AGI:  At5g62150.1    Description:  peptidoglycan-binding LysM domain-containing protein. similar to peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G25433.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24588.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62985.1); contains InterPro domain Peptidoglycan-binding LysM; (InterPro:IPR002482) Range:  from: 24975467    to: 24975995    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version