Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                --------->YAB1              <---------ICU4             <---------ATHB51             --------->ICU4                             --------->At5g28300  <---------ARR14(2)                                    <-----------HVH21              --------->ANAC58  --------->ARR11(3)                                  <---------DEAR3(1)             --------->MYB52(1)  --------->ARR14(2)                                  <---------ANAC46              <---------SPL7  <-----------ARR10                                ----------->HVH21           <---------LBD16      -  <---------ARR11(3)                               ----------->TGA1            <---------At5g28300 --  --------->GLK1(2)                          --------->ALFIN1 <---------O2    --------->MYB52(1)  <-- <---------ARR14(1)                >>>>>>>>>TBF1<---------AtMYB61        <---------YAB1--------->ANAC58 <---------GLK1(2)      <-----------HVH21 <---------DEAR3(1)  --------->O2  ------->TEIL  --------->MYB52(1)   agagaatcttcagaaataatgaaacctgtcaatggaagaagaagacggtgatggtgacggtgagacgagacgactatgaatcacggcgaacgaaacagag  24944500                                                          <---------HSFB2a(2)                                                      <---------SPL7                                                    <---------------AtSPL3                                              <-----------HVH21                                        *TSS <------MYB46(1)                                      --------->MYB52(1)--------->SPL7                                      ---------->DOF2------>ZmHOX2a(2)                                 <------ZmHOX2a(2)  <------ZmHOX2a(2)                                --------->ARR11(3) --------->ARR14(2) -------->At5g28300             <---------ARR11(3) <---------ARR14(2) --------->GT1              <---------YAB1   <------MYB83 ----------->GT1       <-----------GT1 -------DEAR3(1)          --------->CCA1(2) --------->MYB59        <---------TOE2(3) <---------MYB52(1)   acggtgaatgggttttagaatggctaagttatgagatcactaaaggaaggtcagatcgtacgggaaattagggattttagttaaaccgttctggtttatt  24944600              ----------->TBP        <------MYB46(1)        ----------->GT1              <----------DOF2                                           ------        <------MYB83             <------ZmHOX2a(2)                                         ----------       --------->MYB59          <---------ARR11(3)                                       <-----------GT1       <---------AtMYB61  ------>MYB83                                                  <---------AHL20(2)     <---------MYB52(1)   ------>MYB46(1)                                       --------->At4g35610   <------MYB83         <---------MYB59                                         <---------At4g35610   <------MYB46(1)     --------->DEAR3(2)   <----------DOF2                 --------->TOE2(3)<-------   ttgttcggtttggtttataaatcggaccgaaccagatcacttttgacttttgaaaaaatgtccaaactccaaacgatacctcagctaaaatttatcgtac  24944700                                                                                                   <-                                                                                                  ---                                                                                                  ---                                                                                      --------->GLK1(2)                                                                                   --------->ICU4 <--                                                                              ----------->GT1     <--                                                                            <------------CBF      ---                                                                          <---------AHL20(1)      <--                                                                      <---------AHL20(2)       ------                                                                     --------->AHL20(2)        ------                                                           <---------YAB1 --------->AHL20(1)  <------                                                        ---------->ID1--------->AHL20(2)     <-------                                                       <-------GAMYB --------->AHL20(1)      --------        --------->ARR11(3)                            --------->MYB52(2)  --------->AHL20(2) -------- --->SPL7--------->GLK1(1)                   --------->ARR11(3)      <---------AHL20(2)      <------- ----->AtSPL3      <----------DOF2           <---------ARR11(3)      <---------AHL20(1)    <---------YAB1 --SPL7 <---------ARR11(3)        ---------->DOF2     <---------MYB46(3)  <---------AHL20(2)---------   catgtgagaagatttctatgtcttttttttttttgctaaagaagatagattttagtttgttgtaatagaaatttaatttattgtaaaaattctattataa  24944800     --------->YAB1    <---------YAB1   <-----------GT1 --------AHL20(2) ------>ARR11(3) ------>AHL20(2) -------AHL20(2) -------AHL20(1)                         --------->YAB1 ------>AHL20(1)                        ----------->GT1 -------ARR11(3)                      <------------CBF --->AHL20(2)                       <---------AHL20(2) --->YAB1                           --------->AHL20(1) ---YAB1                           --------->AHL20(2) --AHL20(1)                   ------------>CBF              ---------->DOF2         <---------AHL20(2) ->AHL20(2)           <---------------AtSPL8    --------->AHL20(1)        ------->TEIL ->AHL20(1)           <---------ICU4<---------AHL20(1)------->TEIL        <---------ARR14(2) --AHL20(2)           --------------->AtSPL8   --------->AHL20(2)         --------->ARR14(2) >YAB1        <---------MYB52(1)   --------->YAB1--------->CCA1(2)       <---------CCA1(2)<---------CCA1(2)   tatattttcattatccgtttcgaattagtactcacaattatattgataaatatatgaacatgtaaagccctcgttgtatcttccatataatcaaatctct  24944900                                                                    --------->LBD16                                                                   <---------ANAC46             <----                                                                   ----------->GT1            -------      --------->ANAC55(2)                                 <---------DEAR3(1)     --------->STY1(1)     <---------TOE1(3)   ---------->DOF2   <---------ARR11(3)      <---------ANAC58     --------->DAG2     <---------TOE2(3)--------->ANAC58     --------->ARR11(3)      <---------ANAC58    ---------->DOF2    <-----------GT1   --------->ANAC58     <-----------ARR10<------NtERF2        <---------STY1(1)   agggtttaacgtgatgaagagaagaagcaaagagagcaactacaatatctcatcacaacgtcgtcgataccgtgaaatctccactagggaaaagtcccgt  24945000                                         --------->HSFC1(2)                                         <---------HSFC1(2)                                         --------->HSFB2a(1)                                     --------->ANAC46                                          ------                                     --------->ANAC58                                         -------                                     --------->ANAC58                                         <------                              <---------ARR14(2)                                              <------                              --------->ARR14(2)                                           <---------WRKY12                              --------->ARR11(3)           --------->O2       --------->HSFB2a(2) ---     --------->GLK1(1)        <---------ARR11(3)           <---------O2       <---------HSFB2a(2)<---     <---------GLK1(1)      ----------->ARR10              <---------TGA1a<---------ANAC58 <---------WRKY45 -----MYB52(1)           --------->ALFIN1<---------HSFB2a(1)      <---------ARR14(2)       <---------WRKY38(1) ---->GT1           --------->MYB52(1) <---------GLK1(2)   --------->TGA1a<---------ANAC58--------->WRKY18(1)   tatattgatatccctctcgatataacggtggagatactcaagaaactccctgcgaagtctctcgtgaggttccaatgcgtctcgaaacaatggtcaacca  24945100                                                                 <---------ANAC46                                                               <---------MYB46(3)                                                              <---------AtMYB61                                                              --------->ALFIN1        <---------ANAC46                                  <---------At4g35610      ------>ZmHOX2a(2)                                   --------->ZAT14     <------ZmHOX2a(2)                                    <---------ZAT2    <---------ARR14(2)                                    --------->ZAT2                        -----    --------->ARR14(2)                                    --------->At4g35610                  <----- --->YAB1--------->LBD16                                 ----------->RAV1(1)                  ------>MYB83 -->MYB46(3)                                           --------->LBD16                --------->ZAT6 -----------AGL3               ------>ZmHOX2a(2)      --------->ANAC46           <---------At4g35610 ---ATHB12             --------->ATHB12  --------->SPL7--------->At4g35610       --------->At4g35610 ------>ATHB51       <---------WOX13(1) <---------MYB52(1)<---------ZAT14  ------>ZmHOX2a(1)  ------>MYB46(1) ------YAB1        --------->ATHB12 <---------ANAC46 <---------LBD16  --------->GLK1(1)      --------   ttatcggatcccgtagagacttcattgattcgatcgtggcccgttcgatgactcatccgcagcagtggtgggatgtccttctcatcttccactaccaatc  24945200                                                                           <---------WRKY38(1)                                                                           <---------ETT(2)                                                                           <---------WRKY12         <----------DOF2                                                 <-----------HVH21   --------->ARR11(3)                                                   ------->GAMYB   --------->ARR14(2)                                                 <---------At5g28300   <---------ARR14(2)                                                <-----------GT1   <-----------ARR10                                                 --------->MYB52(1)   <---------ARR11(3)                     --------->MYB46(3)   --------->LBD16                <------ ---->YAB1                               -------->P           <---------LBD16    <---------MYB52(1) ----ATHB12       <---------ICU4    --------->ZAT6            --------->LBD16   <-------GAMYB <------ ->WOX13(1)  <-----------GT1  ------>ZmHOX2a(1)          --------->WOX13(1)--------->ETT(2)  <-------TEIL   agacaaatcttcttttttcatcttcactcatcctctaaacactaaccaagaattagtatcaatccctggattaacggtcgactgttatggctacattcgt  24945300                                                                                           <---------YAB1                                                                                   ------>ZmHOX2a(2)                                                                                  --------->CCA1(2)                                                                                  <------ZmHOX2a(2)         <-----------RAV1(1)                                                     --------->ARR11(3)        <---------TOE2(3)                                                        <---------AGP1      <---------AHL20(2)                  <-----------GT1                        --------->AGP1 ---ANAC58                        ---------->ID1------->GAMYB                    <---------ARR11(3) ---ANAC58                      <-----------RAV1(1)                          ---------->DOF2   ggtttgattttatgttgttcagatagttctatttctgtcgctatatacaaccctactacgaggcagtctcttctcttaccaaagatctaaatgctcatag  24945400  Previous    Next  AGI:  At5g62050.1    Description:  OXA1 (Oxidase assembly 1); P-P-bond-hydrolysis-driven protein transmembrane transporter. Identical to Inner membrane protein OXA1, mitochondrial precursor (OXA1) [Arabidopsis Thaliana] (GB:Q42191;GB:Q42190); similar to OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE) [Arabidopsis thaliana] (TAIR:AT2G46470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69547.1); contains InterPro domain 60 kDa inner membrane insertion protein; (InterPro:IPR001708) Range:  from: 24941000    to: 24944540    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g62060.1    Description:  F-box family protein. Identical to Putative F-box protein At5g62060 [Arabidopsis Thaliana] (GB:Q9FIT3); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G32420.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70090.1); contains InterPro domain F-box associated type 3 (InterPro:IPR013187); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 24944914    to: 24945924    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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