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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ATERF1(1)
<------
NtERF2
------>
NtERF2
<---------
DEAR3(1)
--------->
DEAR3(1)
----------->
HVH21
--------->
ATERF1(1)
------>
NtERF2
<---------
ORA47(2)
<---------
RAP2.3(1)
<---------
RRTF1(1)
<---------
ERF1
<---------
ATERF1(1)
<---------
DEAR3(1)
<---------
RAP2.3(3)
--------->
ATERF1(2)
<---------
ANAC46
<---------
ATERF1(2)
<---------
RAP2.3(2)
--------->
DEAR3(1)
------>
NtERF2
<------
NtERF2
<---------
RAP2.3(1)
<---------
RRTF1(1)
<---------
ATERF1(1)
<-------
PIF5
--------->
ATERF1(1)
------->
PIF5
<---------
ABI4(1)
<---------
ANAC58
--------->
RAP2.3(1)
--------->
O2
<---------
DEAR4(2)
--------->
TGA1a
<---------
RAP2.6(2)
<---------
DEAR3(1)
<---------
RAP2.3(2)
--------->
DEAR3(1)
<---------
RRTF1(2)
<-------
GAMYB
--------->
ETT(2)
<---------
DEAR3(1)
--------->
MYB46(2)
---
------>
ZmHOX2a(2)
--------->
ATERF1(1)
--------->
MYB111(1)
<--
<------
ZmHOX2a(2)
--------->
ARR14(2)
<---------
ANAC58
--------->
MYB52(2)
<------
--------->
ARR14(2)
<---------
MYB46(3)
<---------
ANAC46
<---------
MYB46(3)
------>
ZmHOX2a(1)
<---------
ARR14(2)
--------->
ALFIN1
<---------
ATERF1(1)
--------->
MYB55(2)
--------
--------->
LBD16
<---------
ANAC58
<------
NtERF2
--------->
MYB111(2)
<---------
MYB52(1)
---------
LBD16
--------->
HSFB2a(2)
<---------
RAP2.6(1)
<------
MYB46(1)
--------->
DOF5.7(2)
----->
TEIL
<---------
O2
<---------
ANAC46
------>
NtERF2
<------
MYB83
<---------
ANAC46
---------
------
SPL7
<---------
TGA1a
<---------
ARR14(2)
<---------
ANAC58
<--------
P
---------->
ID1
<-
-->
At4g35610
<---------
HSFB2a(2)
<---------
DEAR4(2)
--------->
MYB59
<---------
AtMYB61
<---------
YAB1
gtaccggatcgtcgacgtctggacgtggtggatgcggcggcgacgacttgcgtttctag
tttggtttgggtagttgtggtttgtttagtcgttatcctaa
24864200
--------------->
AGL15
<----------
DOF2
---------->
ID1
<-----------
GT1
<<<<<<<<<<
GT-3b
------>
AHL20(2)
--------->
AHL20(2)
-------
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
---
---
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
ANAC46
->
TOE2(3)
--------->
AHL20(2)
--------->
AHL20(1)
<----------
DOF2
--------->
ANAC58
>
YAB1
<----------
DOF2
<---------
AHL20(1)
--------->
TOE1(3)
--------->
ANAC58
----------
GT1
<---------
AHL20(2)
--------->
TOE2(3)
<---------
REM1(2)
ttaactattagtctttaatttagtcttcttggctaatttatttttctttttttgtcaaaacctttaatttgttatggctaatttgttatacacgcagttt
24864300
<---------
ARR14(2)
--------->
ARR14(2)
---------->
DOF2
<-----------
GT1
--------->
MYB52(1)
--------->
WRKY18(1)
<---------
ZAT14
---
<---------
DOF5.7(2)
<------
MYB46(1)
<-------
TEIL
--------->
ZAT18
<-----
--------->
DOF5.7(2)
<------
MYB83
--------->
CCA1(2)
----------->
GT1
------
------>
TOE2(3)
--------->
MYB59
<---------
TOE2(3)
--------->
ZAT14
--------->
YAB1
tcttaatgcgttaacggattttaaaaccaatttggtcaaactcaaaagtactaagatacatttgagttaagagcactgaaaataaccattcatacatcga
24864400
--------->
YAB1
<--------
ATHB1
<---------
ICU4
--------->
ATHB51
--------->
WOX13(1)
--------->
AHL20(2)
<---------
AHL20(2)
<
<---------
YAB1
----------------->
AGL1
---
<---------
ICU4
<------------
ATHB5
--------->
CCA1(2)
<----
--------->
ICU4
<---------
ATHB51
--------->
AHL20(1)
<---------
ANAC46
------->
DOF2
<---------
bZIP60(1)
--------->
ICU4
--------->
ARR11(3)
<---------
ANAC58
----
HSFB2a(2)
--------->
bZIP60(1)
<---------
ATHB12
--------->
AHL20(2)
<---------
ANAC58
--->
HSFB2a(2)
<-----------
HVH21
<---------
ATHB12
<----------
ID1
<----------
ID1
<---------
DEAR3(1)
gaaagaactgtgaaggtgtcatcagtataattaatcaataatgggccagtttgagacaaatatatgggcctggtttgagacaaatagatgggccgtggat
24864500
<---------
ANAC58
<---------
ANAC46
------------------------>
ANAC81
<---------
ANAC58
<---------------------
WRI1
---------
AHL20(2)
------------------------>
ANAC81
<-------
-------->
TBP
<------------
CBF
--------->
GLK1(2)
<---------
ARR14(2)
<-------
-------
TBP
<-----------
HVH21
---------->
DOF2
*
TSS
--------->
ARR14(2)
<-------
atataaacttgtgtgtcagaaattgcaaacgaagaaaacaaaagagaatttg
agaaacgactgtttgaaattcgaatccatttctcttcggacttgtgtg
24864600
<---------
DEAR3(1)
--------->
RAP2.3(1)
------>
NtERF2
<---------
ANAC46
---
--------->
LBD16
<---------
ATERF1(1)
--------->
ALFIN1
------>
NtERF2
--------->
LBD16
---------->
DOF2
--------->
ANAC58
--------->
ANAC46
--------->
ANAC46
<--
--------->
ANAC58
--------->
GLK1(2)
<---------
LBD16
------
--------->
ANAC46
--------->
HSFB2a(1)
<---------
REM1(2)
---------
<---------
GLK1(1)
<---------
LBD16
<---------
HSFB2a(1)
<------
NtERF2
===============
--------->
GLK1(1)
<---------
GLK1(1)
--------->
HSFC1(2)
------>
NtERF2
<------
ZmHOX2a(1)
--
ANAC58
--------->
GLK1(1)
--------->
LBD16
--------->
ANAC46
<------
NtERF2
----
--
ANAC46
------>
ZmHOX2a(1)
--------->
ANAC46
<---------
DEAR3(1)
===============
--
ANAC58
------>
ZmHOX2a(1)
<<<<<<<<<<
E2Fa
<---------
LBD16
<---------
LBD16
<---------
LBD16
<-----
ataactgatttcctcctaca
atggagttcccgccaagagcgttttatccacggagattccaggcctctccggcgcaatacacggcggaggaaagtgctgc
24864700
<---------
GLK1(1)
<------
ZmHOX2a(2)
--------->
GLK1(1)
--------->
ARR14(2)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
ARR14(2)
<---------
AGP1
--------->
ARR14(3)
--------->
AGP1
<------
NtERF2
--------->
ATERF1(1)
----------->
RAV1(1)
------>
NtERF2
--------->
ANAC46
--------->
DEAR3(1)
--------->
RAP2.3(1)
<---------
RAP2.3(1)
<---------
DEAR3(1)
<---------
ANAC46
<---------
ARR14(2)
--------->
ZAT2
<---------
ANAC58
--------->
ARR14(2)
--------->
At4g35610
<---------
ANAC58
---
------>
At4g35610
--------->
CCA1(2)
--------->
ZAT18
--------------->
AtSPL8
<----
-------
At4g35610
--------->
LBD16
------>
ZmHOX2a(2)
<-----------------------
TaNAC69(2)
--->
At4g35610
<---------
ARR14(3)
--------->
ETT(2)
<---------------
AtSPL8
<-----
>
At4g35610
<---------
CCA1(2)
--------->
ANAC46
--------------->
AtSPL3
<-----
======================
HOX2a_HOX2a
<---------
ALFIN1
----------->
GT1
------>
ZmHOX2a(2)
------->
RAV1(1)
------>
ZmHOX2a(2)
<<<<<<<<<<<<<<<<<
LFY
---------->
DOF2
<------
ZmHOX2a(2)
=====================
HOX2a_HOX2a
----------->
RAV1(1)
--------->
ANAC58
--------->
SPL7
<---------
ARR14(2)
----
At4g35610
<-----------
ARR10
----------->
HVH21
--------->
ANAC58
<---------
SPL7
--------->
ARR14(2)
agcagtatcggcgccagatctccgagataagctcgcgacactggtcgatcgcaccaagaaagtgaaaatggcgtaccatcaactccaatcgcagatcgcg
24864800
<---------
HSFB2a(2)
<---------
ARR14(2)
--------->
HSFB2a(2)
<---------
ARR11(3)
<---------
ANAC58
--------->
ARR11(3)
<---------
ANAC58
<-------
TEIL
<-----------
ARR10
------>
NtERF2
--------->
ARR14(1)
------>
ZmHOX2a(2)
------>
SPL7
<---------
GLK1(2)
<---------
AGP1
-----
SPL7
--------->
ARR11(1)
--------->
CCA1(2)
----
ANAC58
----------->
GT1
<---------
MYB46(3)
--------->
AGP1
----
ANAC58
---------->
DOF2
--------------------->
WRI1
<------
ZmHOX2a(2)
------->
TEIL
-
ttcggccttgtcgaa
gtaaagataaatgctcttctctagtttgttagattcgatttctaagtagatctaagcttgattcaaacgaatttgagagaggtaa
24864900
<---------
ZAT18
--------->
ZAT18
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<-------
TEIL
<---------
ANAC46
--------->
CCA1(2)
<---------
ANAC58
<---------
ARR14(2)
--------->
ANAC55(2)
--------->
ARR11(1)
<---------
ANAC58
<--------
P
<---------
ANAC55(2)
<------
MYB46(1)
--------------->
AtSPL3
<---------
ANAC46
--------------->
AtSPL8
<------
MYB83
<---------
ZAT6
<---------
AtMYB61
<-----------
RAV1(1)
<
--------->
MYB111(2)
--------->
LBD16
<---------
AHL20(2)
--
--------->
MYB59
--------->
ATHB12
--------->
ALFIN1
<---
--------->
MYB111(1)
<---------
ANAC58
<---------
AHL20(2)
<---
--------->
MYB46(2)
<---------
ANAC58
--------->
AHL20(2)
<----
<---------
MYB46(3)
<-----------
GT1
<---------
ANAC46
<--------
P
--------->
TOE2(3)
<-----
----->
ZmHOX2a(1)
--------->
ARR14(2)
--------->
GLK1(2)
<----------
DOF2
--------->
YAB1
<-------
tcctattatctggtttggtagattcgagcttgatttgaacgattccgagtgttgcgtactctttaaattggtagtttcaagcttaatttgaacaattgtg
24865000
<---------
At4g35610
--------->
At4g35610
<------
MYB46(1)
<--------
P
<---------
ANAC58
--------->
MYB52(2)
------->
TEIL
<------
MYB46(1)
<------
MYB46(1)
-------
GAMYB
--------->
At4g35610
<----------
DOF2
<------
MYB83
------->
ALFIN1
<------
MYB83
<------
ZmHOX2a(2)
<---------
ANAC46
------
ANAC58
<---------
At4g35610
--------->
ARR14(2)
<-------
GAMYB
<---
------
ANAC58
---------->
DOF2
<---------
ARR14(2)
<---------
ANAC58
<-
-----
MYB46(3)
<---------
AHL20(2)
<---------
ANAC58
<---------
MYB46(3)
----
ANAC46
--------->
GLK1(2)
<-----------
RAV1(2)
<---------
ANAC58
--------->
MYB55(2)
----
RAV1(1)
<---------
YAB1
<---------
AHL20(2)
<---------
GLK1(2)
<------
MYB83
----
ggtgttgcaacgaatttgatagagaatttgataatttaaag
gcaggtgaagttttcgattctctggcgatccctttgatgaagttggttgggctgaaaac
24865100
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AGI:
At5g61850.1
Description:
LFY (LEAFY); transcription factor. Identical to Protein LEAFY (LFY) [Arabidopsis Thaliana] (GB:Q00958;GB:Q8LSH2;GB:Q8LSH3); similar to LEAFY transcription factor [Brassica juncea] (GB:ABF06559.1); contains InterPro domain Floricaula/leafy protein; (InterPro:IPR002910)
Range:
from: 24861521
to: 24864159
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At5g61865.1
Description:
similar to hypothetical protein [Vitis vinifera] (GB:CAN73072.1)
Range:
from: 24864553
to: 24867018
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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