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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
AHL20(2)
--------->
TOE2(3)
--------->
ICU4
--------->
At5g28300
----------->
GT1
--------->
YAB1
--------->
AHL20(2)
<------
ZmHOX2a(2)
<---------
ARR11(3)
--------->
ARR11(3)
--------->
AHL20(2)
--------->
ARR14(2)
<------
ZmHOX2a(1)
<---------
ARR14(2)
--------->
LBD16
--------->
TOE2(3)
<---------
YAB1
--------->
LBD16
<---------
ZAT2
<-----------
ARR10
--------->
YAB1
->
LBD16
<---------
LBD16
--------->
ZAT2
<------
ZmHOX2a(1)
<---------
YAB1
-
aaaaaaaaaacccccgaggatgaaattaaaacaaataacacagcttgaacaaaacatcaaaaacagaggatcatcacagtaaatattaatacttgaacaa
24861100
<--------
<---------
ANAC55(2)
<---------
ANAC58
--------->
ANAC55(2)
<---------
ANAC58
<---------
ANAC46
<---------
YAB1
<---------
TGA1a
--------->
TOE2(3)
<---------
AHL20(2)
<--
--------->
At5g28300
--------->
AHL20(2)
---
--------->
YAB1
--------->
AHL20(2)
--------->
YAB1
--------->
O2
<------
ZmHOX2a(2)
<---------
ICU4
<---------
O2
<---------
ARR11(3)
--------->
TOE2(3)
============
--------->
ARR11(3)
--------->
TOE1(3)
--------->
TOE1(2)
<------
ZmHOX2a(1)
<---------
AHL20(2)
--------->
At5g28300
--------->
TOE2(2)
--------->
CCA1(2)
--------->
ICU4
--------->
ZAT14
<--------
HAHB4
<---------
TOE1(2)
---------->
DOF2
----------->
GT1
---------->
DOF2
<---------
ZAT14
<---------
ATHB12
--------->
TGA1a
-------->
TOE2(3)
<---------
YAB1
<---------
AHL20(2)
<---------
ALFIN1
--------->
ICU4
------>
ZmHOX2a(1)
aacatcaaaaagataggatcatcacagtaaatattaatatgcataaagaagagaatcaccacagtgaaaaccctaatcattttatattcctacgtgtcaa
24861200
<----
-----
<----
-----
<----
--------->
ANAC58
--------->
ANAC58
--------->
ZAT14
--------->
ANAC46
--------->
ICU4
--------->
ZAT2
----------->
GT1
----------->
GT1
--------->
ANAC58
<---------
YAB1
<---------
ZAT14
<------------
AtMYB77
<----
---
HVH21
--------->
YAB1
<---------
ANAC58
------------>
CBF
<-----
-------
ATHB51
--------->
YAB1
---------->
DOF2
<---------
ANAC58
------->
GAMYB
<---------
ZAT2
------>
ICU4
<---------
ICU4
---------->
DOF2
--------->
DAG2
<<<<<<<<<
TAC1
--------->
ANAC58
=====================================
bZIP_DOF
---------->
DOF2
--------->
ZAT2
--------->
ANAC46
attatgaatggtcataatcagagtagagaaaaagaatgtcgatgaaagaaaaagtttgacttgttaagtcccaactgtcaatttcccagcaagacacata
24861300
--------->
REM1(1)
--------->
ANAC46
<-----------
GT1
<----------
DOF2
<-
-------
ARR10
-----
---->
ARR14(2)
<--------
-----
ARR11(3)
---------
---->
ARR11(3)
<------------
CBF
<-----------
GT1
-----
ARR11(1)
--------->
ATHB12
<---------
KAN4(2)
<---------
AHL20(2)
-----
ARR14(2)
<----------
DOF2
----------->
TBP
----------->
TBP
--------->
AHL20(2)
----
CCA1(2)
--------->
ANAC46
--------->
YAB1
---------->
DOF2
--------->
TOE1(2)
<-----
tcttcttttacatcacattacatctacacataaatgctttattgcaaaaatagcgatataaaaaaagaatatacaaaaacctagtatttattttctagat
24861400
<---------------
AGL15
------------>
CBF
--------->
ANAC58
--------->
ANAC58
---------->
DOF2
<-----------
RAV1(1)
<---------
ICU4
<---------
At4g35610
---------
DOF2
--------->
ICU4
--------->
WOX13(1)
---------->
DOF2
---->
GLK1(2)
----------->
GT1
--------->
DAG2
----------->
GT1
-
HSFB2a(2)
<---------
ANAC58
------------>
CBF
--------------->
AGL15
<---------
ZAT6
>
HSFB2a(2)
----------->
TBP
--------->
ALFIN1
---------->
DOF2
---------->
DOF2
---------->
DOF2
----
GLK1(2)
<---------
ANAC58
<-----------
GT1
--------->
At4g35610
----------->
GT1
tctttactgttgtatatatagaagttgctcgagtggtcatttttacaataaagcaatctgctcaaaagagtaaagaaagagagaaaaagagagtgataga
24861500
<-------
<-------
--------
<-------
<---------
LBD16
------>
MYB46(1)
--------->
AtMYB61
--------->
ANAC58
<---------
ALFIN1
<---------
TOE1(3)
--------->
ANAC58
--------->
DEAR3(1)
------>
ZmHOX2a(1)
<---------
PCF2
--------->
ZAT2
------>
ZmHOX2a(2)
--------->
ALFIN1
--------->
AtMYB61
<------
ZmHOX2a(2)
--------->
LBD16
<---------
ALFIN1
------->
TEIL
<---------
LBD16
--------->
DEAR3(1)
--------->
ARR14(2)
--------->
KAN4(2)
--------->
MYB46(3)
<-
--------->
ARR11(3)
<----------
TaMYB80
--------->
ANAC58
--
<---------
GLK1(2)
<---------
ANAC46
--------->
MYB52(1)
--------->
ANAC58
--
----------->
GT1
<---------
ARR14(2)
<---------
ANAC58
------>
MYB83
<---------
MYB46(3)
--------->
LBD16
----------->
GT1
<---------
TOE2(3)
<---------
ANAC58
--------->
MYB46(3)
--------->
ANAC46
<----
gagagagagaaaaatagatt
atggatcctgaaggtttcacgagtggcttattccggtggaacccaacgagagcattggttcaagcaccacctccggttcc
24861600
--------->
At4g35610
--------->
ATERF1(1)
----------->
HVH21
--------->
At4g35610
--------->
ZAT14
----------->
HVH21
<-----------
HVH21
--------->
ARR14(2)
------->
GAMYB
--------->
LBD16
<---------
ARR14(2)
<---------
At4g35610
--------->
DEAR3(1)
--------->
ANAC58
--------->
At4g35610
<---------
At4g35610
--------->
ANAC58
<---------
At4g35610
--------->
ANAC58
--------->
SPL1(2)
--------->
ZAT14
--------->
ANAC58
--------->
SPL7
----------->
RAV1(2)
<---------
ALFIN1
<---------
SPL1(1)
--------->
At4g35610
--------->
bZIP60(1)
<---------
MYB52(1)
<---------
At4g35610
<---------
bZIP60(1)
--------->
SPL1(1)
--------->
LBD16
--------->
LBD16
<---------
At4g35610
<---------
SPL7
====================
RAV
--------->
DEAR3(1)
<---------
SPL1(2)
--
TCP16(1)
<---------
MYB55(2)
<---------
DEAR3(1)
<---------
ANAC58
--
TCP20
--------->
At4g35610
<-----------
RAV1(2)
<---------
ANAC58
->
ARR14(2)
=============================
RAV
--------------->
AtSPL3
--
ARR14(2)
----------->
RAV1(1)
<---------
ATERF1(1)
<---------------
AtSPL3
--------
ALFIN1
----------->
GT1
<---------
ATERF1(1)
--------->
MYB59
<-
------->
DEAR3(1)
--------->
At4g35610
<---------
ARR14(2)
<--
------->
AtMYB61
<---------
DEAR3(1)
<----------
DOF2
<---------
ANAC46
<------------------
SPL14
-----
ALFIN1
--------->
MYB46(3)
--------->
RAP2.6(3)
<---------
MYB46(3)
------------------>
SPL14
acctccgctgcagcaacagccggtgacaccgcagacggctgcttttgggatgcgacttggtggtttagagggactattcggtccgtacggtatacgtttc
24861700
--------->
MYB52(1)
<---------
ANAC46
--------->
RAP2.3(1)
--------->
ATERF1(1)
<------
NtERF2
<---------
ATERF1(1)
------>
NtERF2
<---------
ERF1
<---------
DEAR4(2)
<---------
ORA47(2)
<---------
RAP2.3(1)
<---------
ANAC46
<---------
RAP2.3(2)
--------->
ANAC58
<---------
RAP2.3(3)
--------->
ANAC58
<---------
RRTF1(3)
--------->
ZAT2
<---------
DEAR3(1)
<---------
At5g28300
--------->
DEAR3(1)
<---------
LBD16
<---------
ANAC46
<-
<---------
ABI4(1)
<------
MYB46(1)
<---------
ZAT18
<------
ZmHOX2a(1)
-----
<---------
ATERF1(1)
<------
MYB83
<---------
ZAT2
--------->
ALFIN1
<----
--------->
ANAC46
--------->
MYB59
--------->
ZAT18
<---------
TOE2(1)
<---------
YAB1
<----
--------
ALFIN1
<---------
At4g35610
--------->
ANAC58
<---------
TOE1(1)
--------->
ICU4
<-----
-------
REM1(2)
--------->
At4g35610
--------->
ANAC58
<------
ZmHOX2a(1)
--------->
CCA1(2)
--------
tacacggcggcgaagatagcggagttaggttttacggcgagcacgcttgtgggtatgaaggacgaggagcttgaagagatgatgaatagtctctctcata
24861800
<---------
At4g35610
--------->
At4g35610
<---------
ZAT2
<---------
ZAT2
--------->
At4g35610
<---------
HSFC1(2)
--------->
ANAC58
--------->
HSFC1(2)
--------->
ANAC58
<---
<---------
HSFB2a(1)
--------->
SPL1(2)
----
<---------
MYB46(3)
<---------------
AtSPL3
----
<---------
MYB52(1)
--------------->
AtSPL3
<---------
At4g35610
---------
<-------
GAMYB
<---------
DOF5.7(2)
---------->
DOF2
<--------
<---------
ANAC58
--------->
MYB52(1)
<---------
MYB52(1)
---------
<---------
ANAC58
<---------
WRKY38(1)
<---------
RAP2.6(3)
<--------
---------
DOF2
<------
MYB83
----------->
GT1
<-----------
HVH21
--------->
ARR14(2)
---->
ARR11(3)
<---------
MYB46(3)
--------->
ZAT2
----------->
HVH21
--------->
GLK1(2)
-----
ARR11(3)
<------
MYB46(1)
<---------
At4g35610
<---------
KAN4(2)
-----
ARR11(1)
<--------
P
<---------
SPL7
<-------
GAMYB
--------->
ATHB12
<------
ZmHOX2a(1)
----
CCA1(2)
<-----------
RAV1(1)
---------->
DOF2
--------->
At4g35610
<------
ZmHOX2a(1)
->
YAB1
--------->
HSFB2a(1)
--------->
SPL7
------>
NtERF2
--------->
MYB52(1)
<------
ZmHOX2a(1)
<---
tctttcgttgggagcttcttgttggtgaacggtacggtatcaaagctgccgttagagctgaacggagacgattgcaagaagaggaggaagaggaatcttc
24861900
<------
NtERF2
<---------
MYB52(1)
<---------
RAP2.6(3)
------>
NtERF2
<-----------
HVH21
<---------
YAB1
--------->
RAP2.3(2)
<---------
ICU4
--------->
RRTF1(3)
-------->
HAHB4
--------->
RAP2.6(2)
--------->
YAB1
--------->
DEAR3(1)
--------->
ICU4
--------->
RAP2.3(3)
<---------
ICU4
--------->
RAP2.3(1)
<--------
ATHB1
<------
NtERF2
--------->
ATHB51
------>
NtERF2
<---------
ARR14(2)
--------->
YAB1
<---------
ATERF1(1)
--------->
At4g35610
<--------
HAHB4
--------->
ANAC46
<---------
At4g35610
<---------
ATHB51
------
HSFC1(1)
------>
NtERF2
--------->
AHL20(2)
----->
HSFC1(1)
--------->
DEAR3(1)
--------->
ANAC58
<---------
ATHB12
----->
HSFB2a(2)
--------->
RAP2.3(1)
--------->
ANAC58
--------->
ICU4
>
HSFC1(2)
--------->
LBD16
<---------
MYB52(1)
<-------
TEIL
-
HSFB2a(1)
------>
NtERF2
<---------
LBD16
----------->
GT1
>
HSFB2a(1)
<---------
ATERF1(1)
--------->
YAB1
<---------------
AtSPL8
-
HSFC1(2)
--------->
ANAC46
--------->
LBD16
--------------->
AtSPL8
------
HSFB2a(2)
--------->
DEAR3(1)
<---------
ICU4
<-----------------
AGL1
----
tagacgccgtcatttgctactctccgccgctggtgattccggtactcatcacgctcttgatgctctctcccaagaag
gtacaataattatgaatacatat
24862000
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AGI:
At5g61850.1
Description:
LFY (LEAFY); transcription factor. Identical to Protein LEAFY (LFY) [Arabidopsis Thaliana] (GB:Q00958;GB:Q8LSH2;GB:Q8LSH3); similar to LEAFY transcription factor [Brassica juncea] (GB:ABF06559.1); contains InterPro domain Floricaula/leafy protein; (InterPro:IPR002910)
Range:
from: 24861521
to: 24864159
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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