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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                 <---------AHL20(2)
                                                                                --------->TOE2(3)
                                                                              --------->ICU4
                                                                          --------->At5g28300
                                                                         ----------->GT1
                                                                   --------->YAB1--------->AHL20(2)
                                                                  <------ZmHOX2a(2)
                                                                 <---------ARR11(3)
                                                                 --------->ARR11(3)
                      --------->AHL20(2)                         --------->ARR14(2)
              <------ZmHOX2a(1)                                  <---------ARR14(2)
           --------->LBD16                         --------->TOE2(3) <---------YAB1
          --------->LBD16             <---------ZAT2             <-----------ARR10 --------->YAB1
->LBD16 <---------LBD16               --------->ZAT2            <------ZmHOX2a(1)<---------YAB1    -
 
aaaaaaaaaacccccgaggatgaaattaaaacaaataacacagcttgaacaaaacatcaaaaacagaggatcatcacagtaaatattaatacttgaacaa  24861100
                                                                                           <--------
                                                                                        <---------ANAC55(2)
                                                                                        <---------ANAC58
                                                                                        --------->ANAC55(2)
                                                                                        <---------ANAC58
                                                                                        <---------ANAC46
                             <---------YAB1                                             <---------TGA1a
                            --------->TOE2(3)                                <---------AHL20(2)  <--
                      --------->At5g28300                                   --------->AHL20(2)   ---
               --------->YAB1--------->AHL20(2)                          --------->YAB1 --------->O2
              <------ZmHOX2a(2)                                          <---------ICU4 <---------O2
             <---------ARR11(3)                                    --------->TOE2(3)    ============
             --------->ARR11(3)                                    --------->TOE1(3) --------->TOE1(2)
            <------ZmHOX2a(1)<---------AHL20(2)            --------->At5g28300       --------->TOE2(2)
         --------->CCA1(2)--------->ICU4                --------->ZAT14  <--------HAHB4<---------TOE1(2)
    ---------->DOF2  ----------->GT1    ---------->DOF2 <---------ZAT14 <---------ATHB12--------->TGA1a
-------->TOE2(3) <---------YAB1<---------AHL20(2)      <---------ALFIN1 --------->ICU4------>ZmHOX2a(1)
 
aacatcaaaaagataggatcatcacagtaaatattaatatgcataaagaagagaatcaccacagtgaaaaccctaatcattttatattcctacgtgtcaa  24861200
                                                                                               <----
                                                                                               -----
                                                                                               <----
                                                                                               -----
                                                                                               <----
                                                                                       --------->ANAC58
                                                                                       --------->ANAC58
                  --------->ZAT14                                                      --------->ANAC46
          --------->ICU4                                                            --------->ZAT2
     ----------->GT1----------->GT1                                                --------->ANAC58
<---------YAB1    <---------ZAT14                                     <------------AtMYB77     <----
---HVH21--------->YAB1                                 <---------ANAC58  ------------>CBF     <-----
-------ATHB51 --------->YAB1            ---------->DOF2<---------ANAC58------->GAMYB<---------ZAT2
------>ICU4<---------ICU4 ---------->DOF2      --------->DAG2         <<<<<<<<<TAC1--------->ANAC58
=====================================bZIP_DOF ---------->DOF2        --------->ZAT2--------->ANAC46
 
attatgaatggtcataatcagagtagagaaaaagaatgtcgatgaaagaaaaagtttgacttgttaagtcccaactgtcaatttcccagcaagacacata  24861300
      --------->REM1(1)
      --------->ANAC46
    <-----------GT1
 <----------DOF2                                                                                  <-
-------ARR10                                                                                   -----
---->ARR14(2)                                                                              <--------
-----ARR11(3)                                                                              ---------
---->ARR11(3)                       <------------CBF                                    <-----------GT1
-----ARR11(1)                      --------->ATHB12             <---------KAN4(2)   <---------AHL20(2)
-----ARR14(2)                    <----------DOF2      ----------->TBP----------->TBP--------->AHL20(2)
----CCA1(2)             --------->ANAC46    --------->YAB1 ---------->DOF2  --------->TOE1(2) <-----
 
tcttcttttacatcacattacatctacacataaatgctttattgcaaaaatagcgatataaaaaaagaatatacaaaaacctagtatttattttctagat  24861400
                                                         <---------------AGL15
                                                ------------>CBF
                                               --------->ANAC58
                                               --------->ANAC58    ---------->DOF2
   <-----------RAV1(1)              <---------ICU4     <---------At4g35610
---------DOF2                      --------->ICU4 --------->WOX13(1)   ---------->DOF2
---->GLK1(2)                  ----------->GT1 --------->DAG2    ----------->GT1
-HSFB2a(2)             <---------ANAC58 ------------>CBF --------------->AGL15           <---------ZAT6
>HSFB2a(2)----------->TBP    --------->ALFIN1---------->DOF2---------->DOF2      ---------->DOF2
----GLK1(2)            <---------ANAC58<-----------GT1 --------->At4g35610 ----------->GT1
 
tctttactgttgtatatatagaagttgctcgagtggtcatttttacaataaagcaatctgctcaaaagagtaaagaaagagagaaaaagagagtgataga  24861500
                                                                                            <-------
                                                                                            <-------
                                                                                            --------
                                                                                            <-------
                                                                                        <---------LBD16
                                                            ------>MYB46(1)           --------->AtMYB61
                                                         --------->ANAC58             <---------ALFIN1
                           <---------TOE1(3)             --------->ANAC58             --------->DEAR3(1)
                        ------>ZmHOX2a(1)              <---------PCF2                --------->ZAT2
                      ------>ZmHOX2a(2)             --------->ALFIN1               --------->AtMYB61
                     <------ZmHOX2a(2)            --------->LBD16                  <---------ALFIN1
                    ------->TEIL                <---------LBD16                    --------->DEAR3(1)
                    --------->ARR14(2)       --------->KAN4(2)                 --------->MYB46(3) <-
                    --------->ARR11(3)      <----------TaMYB80                --------->ANAC58    --
             <---------GLK1(2)            <---------ANAC46  --------->MYB52(1)--------->ANAC58    --
   ----------->GT1  <---------ARR14(2)    <---------ANAC58  ------>MYB83<---------MYB46(3)--------->LBD16
 ----------->GT1 <---------TOE2(3)        <---------ANAC58--------->MYB46(3)  --------->ANAC46 <----
 
gagagagagaaaaatagattatggatcctgaaggtttcacgagtggcttattccggtggaacccaacgagagcattggttcaagcaccacctccggttcc  24861600
                                 --------->At4g35610
                                 --------->ATERF1(1)
                            ----------->HVH21
                          --------->At4g35610
                          --------->ZAT14
                   ----------->HVH21
                  <-----------HVH21                                                    --------->ARR14(2)
             ------->GAMYB--------->LBD16                                              <---------ARR14(2)
        <---------At4g35610 --------->DEAR3(1)                                     --------->ANAC58
     --------->At4g35610  <---------At4g35610                                      --------->ANAC58
     <---------At4g35610--------->ANAC58                                          --------->SPL1(2)
     --------->ZAT14    --------->ANAC58                                          --------->SPL7
  ----------->RAV1(2) <---------ALFIN1                                           <---------SPL1(1)
  --------->At4g35610 --------->bZIP60(1)                                        <---------MYB52(1)
  <---------At4g35610 <---------bZIP60(1)                                        --------->SPL1(1)
  --------->LBD16--------->LBD16 <---------At4g35610                            <---------SPL7
  ====================RAV--------->DEAR3(1)                                     <---------SPL1(2)
--TCP16(1)  <---------MYB55(2) <---------DEAR3(1)                              <---------ANAC58
--TCP20 --------->At4g35610<-----------RAV1(2)                                 <---------ANAC58
->ARR14(2)=============================RAV                                    --------------->AtSPL3
--ARR14(2)----------->RAV1(1)<---------ATERF1(1)                              <---------------AtSPL3
--------ALFIN1   ----------->GT1<---------ATERF1(1)                       --------->MYB59         <-
------->DEAR3(1) --------->At4g35610                                   <---------ARR14(2)        <--
------->AtMYB61 <---------DEAR3(1)    <----------DOF2      <---------ANAC46  <------------------SPL14
-----ALFIN1 --------->MYB46(3)--------->RAP2.6(3)        <---------MYB46(3) ------------------>SPL14
 
acctccgctgcagcaacagccggtgacaccgcagacggctgcttttgggatgcgacttggtggtttagagggactattcggtccgtacggtatacgtttc  24861700
             --------->MYB52(1)
      <---------ANAC46
     --------->RAP2.3(1)
     --------->ATERF1(1)
     <------NtERF2
    <---------ATERF1(1)
    ------>NtERF2
    <---------ERF1
    <---------DEAR4(2)
    <---------ORA47(2)
    <---------RAP2.3(1)
   <---------ANAC46
   <---------RAP2.3(2)                 --------->ANAC58
   <---------RAP2.3(3)                 --------->ANAC58
   <---------RRTF1(3)               --------->ZAT2
   <---------DEAR3(1)        <---------At5g28300
   --------->DEAR3(1)        <---------LBD16 <---------ANAC46                                     <-
  <---------ABI4(1)    <------MYB46(1)<---------ZAT18         <------ZmHOX2a(1)                -----
 <---------ATERF1(1)   <------MYB83 <---------ZAT2          --------->ALFIN1                   <----
--------->ANAC46      --------->MYB59 --------->ZAT18     <---------TOE2(1)   <---------YAB1   <----
--------ALFIN1<---------At4g35610  --------->ANAC58       <---------TOE1(1)--------->ICU4     <-----
-------REM1(2)--------->At4g35610  --------->ANAC58     <------ZmHOX2a(1)--------->CCA1(2)  --------
 
tacacggcggcgaagatagcggagttaggttttacggcgagcacgcttgtgggtatgaaggacgaggagcttgaagagatgatgaatagtctctctcata  24861800
         <---------At4g35610
         --------->At4g35610            <---------ZAT2
         <---------ZAT2                 --------->At4g35610
         <---------HSFC1(2)   --------->ANAC58
         --------->HSFC1(2)   --------->ANAC58                                                  <---
         <---------HSFB2a(1) --------->SPL1(2)                                                  ----
     <---------MYB46(3)  <---------------AtSPL3                                                 ----
   <---------MYB52(1)    --------------->AtSPL3     <---------At4g35610                    ---------
  <-------GAMYB        <---------DOF5.7(2)       ---------->DOF2                           <--------
 <---------ANAC58      --------->MYB52(1)      <---------MYB52(1)                          ---------
 <---------ANAC58     <---------WRKY38(1)     <---------RAP2.6(3)                          <--------
---------DOF2      <------MYB83----------->GT1<-----------HVH21                           --------->ARR14(2)
---->ARR11(3)      <---------MYB46(3)   --------->ZAT2----------->HVH21                   --------->GLK1(2)
-----ARR11(3)      <------MYB46(1)      <---------At4g35610                               <---------KAN4(2)
-----ARR11(1)    <--------P<---------SPL7     <-------GAMYB      --------->ATHB12       <------ZmHOX2a(1)
----CCA1(2)    <-----------RAV1(1)   ---------->DOF2--------->At4g35610           <------ZmHOX2a(1)
->YAB1   --------->HSFB2a(1) --------->SPL7------>NtERF2--------->MYB52(1)     <------ZmHOX2a(1)<---
 
tctttcgttgggagcttcttgttggtgaacggtacggtatcaaagctgccgttagagctgaacggagacgattgcaagaagaggaggaagaggaatcttc  24861900
     <------NtERF2
     <---------MYB52(1)
    <---------RAP2.6(3)
    ------>NtERF2
    <-----------HVH21                                                                <---------YAB1
   --------->RAP2.3(2)                                                             <---------ICU4
   --------->RRTF1(3)                                                              -------->HAHB4
   --------->RAP2.6(2)                                                             --------->YAB1
   --------->DEAR3(1)                                                             --------->ICU4
   --------->RAP2.3(3)                                                          <---------ICU4
  --------->RAP2.3(1)                                                           <--------ATHB1
  <------NtERF2                                                                 --------->ATHB51
 ------>NtERF2                  <---------ARR14(2)                              --------->YAB1
 <---------ATERF1(1)    --------->At4g35610                                     <--------HAHB4
--------->ANAC46        <---------At4g35610                                    <---------ATHB51
------HSFC1(1)          ------>NtERF2                                          --------->AHL20(2)
----->HSFC1(1)         --------->DEAR3(1)      --------->ANAC58                <---------ATHB12
----->HSFB2a(2)       --------->RAP2.3(1)      --------->ANAC58                --------->ICU4
>HSFC1(2)            --------->LBD16 <---------MYB52(1)                    <-------TEIL
-HSFB2a(1)           ------>NtERF2<---------LBD16                       ----------->GT1
>HSFB2a(1)           <---------ATERF1(1)  --------->YAB1               <---------------AtSPL8
-HSFC1(2)           --------->ANAC46--------->LBD16                    --------------->AtSPL8
------HSFB2a(2)     --------->DEAR3(1)    <---------ICU4        <-----------------AGL1          ----
 
tagacgccgtcatttgctactctccgccgctggtgattccggtactcatcacgctcttgatgctctctcccaagaaggtacaataattatgaatacatat  24862000
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AGI:  At5g61850.1   
Description:  LFY (LEAFY); transcription factor. Identical to Protein LEAFY (LFY) [Arabidopsis Thaliana] (GB:Q00958;GB:Q8LSH2;GB:Q8LSH3); similar to LEAFY transcription factor [Brassica juncea] (GB:ABF06559.1); contains InterPro domain Floricaula/leafy protein; (InterPro:IPR002910)
Range:  from: 24861521    to: 24864159    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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