Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              <----------DOF2             ----------->GT1                                       <---------TOE2(3)                <           --------->At4g35610                         ---------->DOF2      <---------DAG2      <---- -------At4g35610      ---------->DOF2        ---------->DOF2      <---------TOE1(3)         <-------   agcaaatcaaatgggctgaaataacaaaagagaataaggcccagttacaaaagagaataaagttttgttaagggttaacttttttttttgttttcctttt  24577300                        <---------YAB1                        --------->AHL20(1)                        <---------AHL20(2)                        --------->AHL20(2)                       --------->AHL20(2)                   <---------YAB1                  --------->AHL20(2)                                                             ----                  <---------AHL20(1)                                                             ----                  <---------AHL20(2)                                                           <-----  --------->AHL20(2)   <---------AHL20(2)                                           --------->ANAC46 ----------DOF2  --------->YAB1                                        --------->YAB1          <----- -----CCA1(2)   <---------YAB1 ----------->RAV1(1)             <------ZmHOX2a(1)    --------->ANAC55(2) ---DOF2        <---------AHL20(2)--------->YAB1       <---------TOE2(3)     --------->YAB1 <--------   atcttttaatacttctatattataattttattgcaacaatattcaaactagaagtttaatgtataggattcaattacaaaaattatacgtagttttacca  24577400                            --------->AHL20(1)                            <---------ARR11(3)                            <---------AHL20(1) -->MYB46(1)    <---------AHL20(2)        ----------->GT1 -->MYB83   ----------->GT1 --------->ARR11(3)                           <---------ANAC46 ----MYB59 --------->DAG2  --------->RVE1(1)                       <---------AHL20(2)              <- ----MYB46(2)   --------->AHL20(2) --------------->AGL15       <----------DOF2                    --- ---GT1   ---------->DOF2  --------->CCA1(1)                  --------------------->WRI1       ------   aacttctaagaaaaaagtttaatttcgaaatatctttctaagttaagttaatcttcgaattcttcctttttattttcgtttaaaaaccaaaatagagaga  24577500                                                                    --------->ANAC55(2)                                                                    <---------ANAC58                                                                    <---------ANAC58                                                                    <---------ANAC55(2)                                                                   --------->SPL7                                                                   <-------TEIL                                                                   ------->TEIL                                                        --------->YAB1                                                   --------->MYB46(3)     <---------YAB1                              -------->P      <---------SPL7 --------AHL20(2)                             <---------ANAC58  --------->TOE2(1)              <----- ------>AHL20(2)                 <---------ANAC55(2)   <---------ATHB12        <---------YAB1<------- ----->GT1                   <-----------HVH21<---------ANAC58  --------->TOE1(1)          <---------ARR11(3)   ttaaatcgttataggcttagagctactgggctgtcacataaacgaatgacttacccaatgaaaaccccgtacgtgtctaatatgattttccaaaatcatt  24577600                         <---------ARR14(2)                         <---------ARR14(3)                         --------->ARR14(2)                         <---------AGP1                         --------->AGP1                         --------->ARR14(3)                         --------->ARR11(3)                         <---------ARR11(3)                <---------WOX13(1)                                                    --------->ANAC58              --------->ATHB12                                                     <---------SPL7             <---------YAB1                                                     <-----------GT1             --------->ICU4------>ZmHOX2a(2)           --------->HSFB2a(2)      --------->MYB52(1)     --------->MYB52(1) <---------CCA1(2)              <---------HSFB2a(2)   *TSS  ------->GAMYB   <-------TEIL<------------CBF                       <---------LBD16     <---------TOE2(3) ----YAB1<-----------HVH21<------ZmHOX2a(2)        <----------DOF2    <----------DOF2 --------->ANAC58 --ICU4 ------->GAMYB  ----------->ARR10  ----------->TBP          ----------->GT1--------->MYB46(3)   ttagattcaacggtcacgattgactcagatcttgcaacttcgctacataaaccctttctgggagaagtagggttttaagttttaacggacgcgagaaatc  24577700                            <---------ZAT18                            --------->ZAT14                            <---------ZAT14                                          <-------TEIL                         <-------TEIL                                             --------->HSFB2a(1)                     <---------------AtSPL3                            --------->At4g35610                     <---------------AtSPL8                         <---------MYB52(1) <----------DOF2                     --------------->AtSPL3              <----------DOF2          <---------HSFC1(2)                     <---------ZAT6                    --------->At4g35610        --------->HSFC1(2)                 <---------ZAT14      --------->ANAC58 <---------At4g35610       <---------TOE1(3)                 --------->REM1(2)    --------->ANAC58 --------->ZAT2  <---------At4g35610      <----                 --------->ZAT14   <---------REM1(2)   <---------ZAT2 --------->MYB52(2)   <---------   <------ZmHOX2a(1) --------------->AtSPL8    <-----------GT1------->TEIL       <---------TOE2(3)   acagaggaagcgaagtcagtgtagaggtacttcactcttcacgctcatttcactctcagctttgaatctcgttagctgttttgaaggttctttcttttct  24577800                                                                  <---------TOE2(3)                                                                  --------->ANAC55(2)                                                                  <---------ANAC55(2)                                                                 <---------At5g28300                                                                <-----------GT1                                                         <----------DOF2                                                        ------>ZmHOX2a(2)                                                       <------ZmHOX2a(2)                                                      <---------ARR11(3)       <---------ZAT14                                --------->ARR14(2)    <---------ANAC58                                  <---------ARR14(2)    <---------ANAC46                             <---------ARR14(2)                         ------>ZmHOX2a(1)    <---------ANAC58       <---------DAG2        --------->ARR14(2)                        --------->TOE2(3)  <---------YAB1           <----------DOF2    <---------TOE2(3)<---------SPL7    <---------DAG2 -----YAB1     <---------MYB52(1)             --------->MYB59<---------ZAT6      <----------DOF2 -DOF2 --------->ZAT14 ---------->ID1<---------AtLEC2 --------->ARR11(3)      <-----------GT1   gattttgagtgttctctgttatttcttcgcttttcattttcatggatttaggttccgatctttgtgttacggtattgaattcactttttggttccttagt  24577900                                        ---------->ID1                                     <---------WOX13(1)                                    >>>>>>>>>ARR2<---------TOE2(3)                                  <---------YAB1 <---------TOE1(3)                 ------->TEIL <----                                <----------DOF2  <---------YAB1            --------->DAG2       <----                           ---------->DOF2     <-----------GT1            ---------->DOF2     -------      ------->TEIL  ----------->GT1--------->ATHB12<---------GLK1(2) ----------->GT1          <------   agttcatgtatttgcagagtacgagttaaaaaagctttgattgtcgtttttaagattcccttcttcttaagggggaaaaagtatgaaacttgctaatttc  24578000                        <---------ICU4                        <--------HAHB4                        --------->ATHB12                        --------->YAB1             <---------At4g35610                          <----                       <---------YAB1              <------NtERF2                 <---------ARR11(3)                       --------->ICU4              --------->At4g35610          <---------GLK1(1)<---           <------ZmHOX2a(1)                      <---------MYB46(3)            --------->GLK1(1)==== -----ANAC58         --------->YAB1        --------->ARR14(2)                  --------->ARR11(3)<--- -----ANAC58      --------->bZIP60(1)      <---------ARR14(2)            <---------YAB1         <---- -->ARR11(3)      <---------bZIP60(1)  <-----------GT1          ---------->ID1 <---------ARR11(3)---- ---AHL20(2)    --------->YAB1<----------DOF2 <-----------RAV1(1) <----------DOF2--------->ARR11(3)   ttgatagaaaataggaaatgatatcatcattactttgaaattgactatctggtggctgaagtatttgtctttttcatgctagatatctaattgcgatggc  24578100                                                                                                    -                                                                                              <------    ----------->GT1                                                                    --------->ANAC58 -----ANAC58 --------->HSFB2a(2)         --------->ANAC46             --------->ANAC58 --------->ANAC46 -------DOF2 <---------HSFB2a(2)         --------->ANAC58             --------->ANAC58 --------->ANAC58 ===============================================================================================MADS_MADS ------------AGL15         --------->At4g35610          <---------TOE1(3)       <----------DOF2  ---- -----ANAC58<---------LBD16<---------At4g35610         <-----------RAV1(2)      <---------DAG2------- ----------->AGL15 --------->ARR11(3)    --------->ANAC58      <----------DOF2  --------------->AGL15   ttttttgagtaaattcgggaacatattgaagcagaccacaaacaagcaactcaatgctcaggtttctttatcaagcccttcgctttttcaagcaataagg  24578200  Previous    Next  AGI:  At5g61030.1    Description:  GR-RBP3 (glycine-rich RNA-binding protein 3); RNA binding. similar to GR-RBP5 (glycine-rich RNA-binding protein 5), RNA binding [Arabidopsis thaliana] (TAIR:AT1G74230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64431.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71872.1); contains InterPro domain RNA recognition motif, glycine rich protein (InterPro:IPR015465); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 24577677    to: 24579532    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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