Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->LBD16                <---------HSFB2a(2)                --------->HSFB2a(2)           ------>ZmHOX2a(2)         --------->ARR14(2)         <---------ARR11(3)         --------->ARR11(3)         <---------AGP1                                                    <---------MYB52(1)         <-----------ARR10                                           <----------DOF2         <---------ARR14(2)                             <----------DOF2   --------->LBD16         ---        <---------CCA1(2)       --------->ALFIN1       <---------ANAC58   <-----------HVH21       ---      <---------HSFB2a(2)     <---------At4g35610      <---------ANAC46  --------->ANAC55(2)      ---      --------->HSFB2a(2)   <-----------RAV1(2)        <---------ANAC58  --------->ANAC46      ------     <---------LBD16   <---------ICU4             <---------ICU4 <---------ANAC58             <------   --------->ARR14(2)  --------->ATHB12          --------->ICU4  <---------ANAC58           <--------   <---------ARR14(2) --------->ICU4        ----------->GT1   <----------DOF2    --------->ZAT18 ----   cccaagttctggatcttcccagaaatgatttcaggtgtgagtgaagcagtaaacattgctttgactttcgtctttccgtcatttgcactaaatctgtcaa  24569500                                                                                     ------>ZmHOX2a(2)                                                                                    <---------GLK1(1)                                                                                    --------->GLK1(1)                                                                                    <------ZmHOX2a(2)                                                                                   --------->AGP1                                                                                   <---------AGP1                                                                                   --------->ARR11(3)    --------->YAB1                                                                 --------->ARR14(2) ------>TOE2(3)   --------->YAB1                                                   <-----------ARR10 ------>YAB1  <-------TEIL                                                         <---------ARR11(3) ---->GAMYB <---------ARR14(2) --------->At5g28300                         ------->GAMYB --->WOX13(1)<------ZmHOX2a(2) --------->DOF5.7(2)                        <---------MYB52(2)  ------- ---ETT(2)  --------->ARR14(2)----------->GT1                             --------->MYB46(3) <------- ---HVH21   --------->AGP1 --------->GLK1(2)                        --------->YAB1 <---------ARR14(2) ----->MYB46(3)--------->WOX13(1)                                  <---------YAB1 <---------CCA1(2)   ccaaaatcaaaacagatccatcagaacaaaatcggtaactaaaacccaaaactaggcaatatacaaactattatcaacaaacccagatctcttctatcat  24569600                         --------->GLK1(2)                    <---------YAB1                                                                 --                <---------ANAC58                                                --------->ANAC58   --      ---------->DOF2--------->YAB1          <---------WOX13(1)                 --------->ANAC58   --    <---------YAB1<---------CCA1(2)        --------->ATHB12         ---------->DOF2        <---------TOE2(3) -->YAB1        <---------ANAC58          <---------YAB1          <---------MYB59      --------->CCA1(2) --YAB1    <---------MYB46(3)           --------->YAB1     --------->ZAT6      --------->TOE1(2)   <-   agagtcatcaaagtcgttgcatatcataatctagctatacaattgtgattgagagaatataacactgacctaaagctggaacaagcgagatttaagaaat  24569700                                                               --------->CCA1(2)                                                               <------ZmHOX2a(2)                                   <---------ANAC55(2)        <---------ARR11(3)              =======                                   --------->ANAC55(2)        --------->AGP1             ============                         --------->ANAC58                     --------->ARR11(3)         <------ZmHOX2a(2)                         --------->ANAC58                     --------->ARR14(2)        --------->AGP1            <------ZmHOX2a(2)      <---------ANAC55(1)        <---------ARR14(2)   ==================           --------->ARR11(3)      <---------ANAC46   <------MYB46(1)              ------>ZmHOX2a(2)           <---------ARR11(3)      <---------ANAC58<---------MYB52(1)             =================== ------->ANAC58     --------->ANAC58               --------->ARR14(2)             <------ZmHOX2a(2) ------->ANAC58     --------->ANAC58  ---------->DOF2 <------MYB83               <---------ARR11(3) --------->GT1 <---------YAB1   --------->TOE2(2) <---------RAP2.6(3)            --------->ARR11(3) --------ANAC55(2)---------->DOF2  <---------ANAC58<---------ARR14(2)           ------->GAMYB ------>ZmHOX2a(2)   caagtaaaacccagatcatgaaaagccaaggaaacttacgtatagcgattgccgataggtttaagatccacaacttgaacaacgatctcagatcgatcgg  24569800                                                    --------->DEAR3(1)                                                 <---------WRKY38(1)                                                 <---------WRKY12                                                --------->ATERF1(1)           <------ZmHOX2a(1)             <---------At4g35610       ---------->DOF2   --------->MYB52(1)     ----------->HVH21 =================HOX2a_HOX2a            ----------->RAV1(2)                <---------ARR11(3)   <--- =================HOX2a_HOX2a            --------->At4g35610             --------------->AGL15   <--- =================HOX2a_HOX2a            <---------ZAT2       ------->TEIL  --------->ARR11(3)<------ =================HOX2a_HOX2a --------->ALFIN1 <-----------HVH21 <----------DOF2----------->GT1 <----   aagacgaatcaaaggatgggtttgacaaaacggtggagatggcatctggggtcaccgaagtctgcatctttctctctagatattgaaaaatgaaacgttt  24569900                                   <---------MYB52(1)                                  --------->LBD16                        <-----------TBP     <----------DOF2              <-----------HVH21              <---------TOE1(1) ---MYB46(1)                     <---------ANAC46                <---------TOE2(1) ---MYB83  --------->YAB1        <---------ANAC58               <-------TEIL                --------- ---MYB52(1)                ---------->DOF2                    --------->CCA1(2)          <----------DOF2 -----AtMYB61    ----------->GT1 <---------ANAC58*TSS         <---------SPL7  ---------->DOF2  <-----   ggtttctctttaatcagaatggtgaaaactaaaagccgtgagatagtgagaagaatgagagagaggtacgagggtttttgtaaaggagagagctttaagc  24570000                              <------NtERF2                             --------->LBD16                                       --------->ARR14(2)                             ------>NtERF2                                         <---------ARR14(2)                            --------->DEAR3(1)                                     --------->ARR11(3)                  <------------CBF                                                 <---------ARR11(3)                <---------AHL20(2)                                                 <---------ARR11(1)       --------->AHL20(2)   <---------ALFIN1                                       <-----------ARR10      --------->AHL20(2)    --------->ANAC46                                       --------->GLK1(2) <---------At4g35610       <---------LBD16                                 <----------DOF2          - ->DOF2<---------AHL20(2)  --------->MYB46(3)   <---------AHL20(2)      <----------DOF2       <------ ----LBD16      --------->AHL20(2)  ------------>CBF               <---------At5g28300<----------DOF2   gggagctattaaattcgattaattgttcccccgccgatttcaatttctatttttttggcaaaaaactcttaccgcttcttttcagtatctttccattttt  24570100    <----------DOF2                     --------->ANAC58            --------->ZAT14                 - <---------ANAC46           <----------DOF2--------->GLK1(2)       <-----------HVH21                < --------->ID1            ------->TEIL  --------->ANAC58     <----------DOF2        <---------TOE1(3) ---AHL20(2)      --------->YAB1      ---------->DOF2  ---------->DOF2              <---------TOE2(3)   ttggcgcattttgttttgtttgataatggactttgtatgcgaaagaaactgtgttacaaaagcctttcacttcaggcccatagtttatggttttgttttt  24570200                           --------->ANAC55(2)                           --------->ANAC46                           --------->ANAC55(1)                           --------->ANAC58                           --------->ANAC58           <---------AHL20(2)              --------->MYB46(3)                     --------->AHL20(2)             <<<<<<<<<GATA-4                --------->ARR11(3)             <<<<<<<<<GATA-2                <---------ARR11(3)             <<<<<<<<<GATA-3        <-------TEIL     <---------AHL20(2)   <---------AHL20(2)             <<<<<<<<<GATA-1    <---------YAB1       --------->AHL20(1)  --------->AHL20(2)            --------->ARR14(2)  --------->ICU4>>>>>>>>>RAP2.2            <---------AHL20(2)  --------->ALFIN1        <---------TOE1(2)--------->RVE1(1)   --------->MYB46(3)                 --- -------->ALFIN1     <-----------HVH21     --------->CCA1(1) ----------->RAV1(1)      ---------->DOF2 -----------RAV1(1) <---------CCA1(2)--------->YAB1  <---------AHL20(1)  <---------AHL20(1)    ------   atgtgtgggtcttgaatccaccgtatcacacgttatgattcataaatatctaaaatttatttccaacaaatacaatttttttgtttcttaaagaacacat  24570300                                           <------ZmHOX2a(2)                                       --------->LBD16                                      <---------LBD16      <---------YAB1                  <-----------RAV1(2)                                 <---------TOE2(3)   --------->ICU4                    --------->LBD16                               --------->GLK1(2)   <---------AHL20(2)            <---------ARR14(2)                   <-----------GT1 <----------DOF2   <---------YAB1      --------->AHL20(2)<------ZmHOX2a(1)          --------->AHL20(2)--------->TOE2(3) ------>ANAC46      ----------->GT1  <---------LBD16            --------->LBD16  --------->MYB46(3) --->TOE1(2)     ---------->DOF2 --------->ARR14(2)  --------->MYB46(3)     <---------ARR11(3)    <--   acgatattattatttcagaaaaagattaaatacaaaatccccaggatcaaaatcaaacaccaattccagattaaacaatatcaacaatctttaatgtttt  24570400  Previous    Next  AGI:  At5g61000.1    Description:  replication protein, putative. similar to replication protein, putative [Arabidopsis thaliana] (TAIR:AT5G08020.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71402.1); similar to 70 kDa subunit of replication protein A [Ipomoea nil] (GB:BAF64713.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64422.1); contains InterPro domain Replication factor-A protein 1, N-terminal; (InterPro:IPR007199); contains InterPro domain Replication factor-A, C-terminal (InterPro:IPR013955); contains InterPro domain Replication factor-a protein 1 Rpa1; (InterPro:IPR004591); contains InterPro domain Nucleic acid binding, OB-fold, tRNA/he Range:  from: 24566804    to: 24569949    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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