Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     --------->ARR14(2)                ------->GAMYB                   --------->GLK1(1)                --------->LBD16                --------->ZAT18                <---------ARR14(2)               <---------HSFB2a(2)                <---------ZAT18                --------->ARR14(2)               --------->HSFB2a(2)               --------->ANAC58            --------->At4g35610            ------>ZmHOX2a(2)             --------->MYB52(1)      --------->DEAR3(1)                  <------ZmHOX2a(2)             ---------->DOF2         ------->GAMYB                      ------->TEIL          --------->TOE2(3)         <------------AtMYB77                <-----------ARR10          ------->GAMYB             --------->DEAR3(2)                  <---------ARR14(2)          --------->TOE1(3)         --------->MYB46(3)                  <---------AGP1     <------NtERF2                --------->ARR14(2)                    --------->ARR14(2)        <--    ------>NtERF2                 <---------ARR14(2)                 <---------ANAC46       ---------   --------->ATERF1(2)   <---------ZAT18   <---------ZAT2            --------->ANAC55(2)    ---------   <---------ATERF1(2)   <---------ZAT14   --------->ZAT2            <---------ANAC55(2) --------->ARR14(2)  --------->RAP2.6(3)    --------->ZAT14 ------>NtERF2            <---------ARR14(2)  --------->ANAC58 ------MYB46(3)--------->ANAC58   --------->MYB52(1) --------->LBD16<---------LBD16<---------ARR14(2) >HVH21 -------->P     --------->ZAT14  --------->DEAR3(1)        --------->ARR14(2)  --------->ANAC58   tgttgacggcaaccctaacgcactctgtgctctccataaccgccgagcagaaacccagaaaacctctggttacggatctaatccagaaacgaaacctcaa  24539800                              --------->MYB52(1)                             --------->ARR14(2)                             <---------ARR14(2)                    ------------>CBF                   <------ZmHOX2a(2)                                   <------ZmHOX2a(1)                   =========================HOX2a_HOX2a             <---------LBD16                  <---------ARR14(2)                           --------->KAN4(2)       --------->ANAC46    --------->LBD16                    --------->HSFB2a(1)       --------->ANAC58   <---------HSFB2a(2)             ----------->GT1       --------->ANAC58   --------->HSFB2a(2)         --------->HSFB2a(2)<---------GLK1(1)  --------->ANAC46<---------ARR11(3)        ----------->GT1   <---------HSFB2a(1) -------ATHB12    --------->AGP1   --------->ALFIN1   <---------HSFC1(1)<---------ARR14(2) >TOE1(3)         --------->ARR11(3)   --------->ZAT2 --------->HSFC1(1)--------->ARR14(2) >TOE2(3)         --------->ARR14(2) <------ZmHOX2a(1)<---------HSFB2a(2)--------->GLK1(1)   atcaacaccacgaaaatgtagatccaatccagaaacggaggagctagggtaattttcgagaagaaaattctcaggaaatgcgatttttgagaattcaaat  24539900                                                                   --------->ANAC58                 <                                                          --------->AHL20(2)                        -                                                     ------------>CBF                       <--------                                                   <---------WRKY38(1)         --------->TOE2(3)   --                                                   <---------WRKY12--------->ANAC58      <---------YAB1                                      <---------AHL20(2)  --------->YAB1----------->GT1  --------->ICU4              ---------->DOF2  <----------DOF2    --------->WRKY18(1)---------->DOF2 <---------------   tttgaagagagagagagaaagagagaagggggacttttgtttattttgagaggtcaacaattaaaaaacaagaaaggcaaaacttaaaaccattatggaa  24540000                                                           <-----------HVH21                                                         ------->PIF4                                                         <-------PIF5                                                         ------->MYC4                                                         <-------MYC4                                                         ------->MYC3                                                         ------->PIF5                                                         <-------MYC2                                                         <-------PIF4                                                         ------->MYC2                                                         <-------MYC3                                                        --------->O2                                                        <---------O2                                                        --------->TGA1a               --------->At4g35610                      --------->ANAC55(2)               ------>NtERF2                            <---------ANAC55(2)              --------->DEAR3(1)                        <---------TGA1a              --------->RAP2.3(2)                      ------->TEIL             --------->DEAR4(2)                        ------------>OsbHLH66         --------->ARR11(3)             --------->RAP2.3(1)                    --------->ANAC58    <---------YAB1<---------YAB1             --------->ATERF1(1)                    <---------ANAC55(2)--------->ARR11(3)             --------->ORA47(2)                     --------->ANAC58   <---------ARR11(3)             <------NtERF2                       <---------MYB52(1) ------->MYC3     <---------ARR11(3)            <---------RAP2.3(1)                 ==================MYC_MYB<---------ICU4 <---------YAB1<---------At4g35610              <-----------HVH21 ------->TEIL      --------->RVE1(1) ---------AHL20(2)      --------->ANAC58        <-------GAMYB  --------->AtLEC2     --------->CCA1(1) -------->AHL20(2)      --------->ANAC58    ------------>MYB.PH3(1) <-------MYC3--------->AHL20(2) -TOE2(3)  --------->ANAC46                 ======================MYC_MYB--------->YAB1--------->YAB1 ------->AHL20(2) <-----------RAV1(2)  ===========================bZIP_DOF  --------->ZAT6        --- --AG--------->YAB1    <-------TEIL    <----------DOF2<------------OsbHLH66<---------YAB1         ---   attaaaattataagcgccgctcaggtacgaattcaaattttctttgagaccgttacgcacgtgtcatgcacatgatcatcactaaaatatcataggccca  24540100                                                                                      <----------DOF2                             ---------->DOF2                                         ================                           <---------YAB1                                            ================            <---------At4g35610                                                      ================  <---------AHL20(2) --------->AHL20(2)                              <------------CBF------>ZmHOX2a(2) ------>AHL20(2)     <---------AHL20(2)              <---------At4g35610           <---------ARR11(3) ------>ATHB51   <---------CCA1(2)    <---------MYB52(1)        --------->AHL20(2) --------->ARR11(3)   ttattttatatttcagcccatattttaatatcaaaggcccattagtttatatttcagcccatagttttaaatattggcccatgttgatctttgtttctga  24540200                             ----------->HVH21                           <---------O2                           --------->ANAC55(2)                           <---------ANAC55(2)                                               --------       <------ZmHOX2a(1)   --------->TGA1a                                                  <--------    *TSS                   --------->O2                                                     <--------    <------ZmHOX2a(1)<---------WOX13(1)                                             --------->HSFB2a(1)  --------->ALFIN1  <-------GAMYB       <---------ZAT2                              <---------HSFB2a(1) <------ZmHOX2a(1)  =================MYC_MYB           --------->GLK1(2)            ----------->GT1 =======HOX2a_HOX2a<---------MYB46(3)   <---------At4g35610                         <------MYB46(1) =============HOX2a_HOX2a>>>>>>>>>>>>WRKY18          ------>NtERF2                  <------MYB83    < ==========HOX2a_HOX2a----------->HVH21 --------->At4g35610                      <------ZmHOX2a(1)  -   agaggaggaggaagaagacgatggttgacacttgacagagtaagctcagaaatggcgactctggtttcgaattgaacttgtgaggaaggtttttagggtt  24540300                                          <---------ARR14(2)                                          --------->ARR14(2)                                      --------->ATERF1(1)                                     <---------At4g35610       ---------->DOF2               --------->At4g35610              <---------At4g35610          <- ----------->GT1                     <---------ZAT2                   --------->At4g35610     <------ --->GT1                             --------->ZAT2           <----------DOF2                 ------- -TOE1(3)                      --------->CCA1(2)           --------->ARR11(3)            <---------At4g35610 -TOE2(3)                     <---------ARR14(2)           <---------ARR14(2)        <---------REM1(1) ---------TOE2(3)             --------->ARR14(2)           <---------ARR11(3)    <---------YAB1    <- -------->DAG2              ----------->ARR10        ----------->GT1  <---------ZAT2<---------YAB1---   ataaggtgataaagaaaatggggaatagtggagatttggagcaggctctgcaagatgggaatatctttagacagctcaatgctcttattgtagctcatct  24540400                                                                                 --------->ANAC58                                                                                 --------->ANAC46                                                                                 --------->ANAC58                                                                                --------->SPL7                                                                     <----------DOF2    --------->YAB1                                    --------->GLK1(2)         ------->TEIL ----------HVH21                                     <---------GLK1(2)       --------->ANAC58 ---At4g35610                                       <---------At4g35610      --------->ANAC58 -->At4g35610                                       --------->At4g35610      --------->ANAC46 ----------TGA1                            --------->At4g35610    ------->TEIL <---------ALFIN1    <- ------>ANAC46                             <---------At4g35610   <---------CCA1(2)                 --   ccgtcatcacaatctctcacaagtatgtttttgctatcgttcttcatctcactcagattccaattttgtatctttacatacgcacgccaatttggattgg  24540500             --------------->AGL15             <---------------AGL15            <-----------------AGL2            ----------------->AGL3            <-----------------AGL3  <---------LBD16 --------GLK1(1)                                                                   <-----------GT1 -- ------->GLK1(1)                             <-------TEIL             ---------->DOF2      <---------ZAT6   gatttctgggtctatctatttttggattgttttttgaaactttgaaattcatttatagatgaagtaagtgctaaaagtttggatttttcattactgttga  24540600                                               <--------P                                              <-------GAMYB                                             <---------MYB46(3)                                            <---------RAP2.6(2)                                           --------->ZAT18                                           <---------ZAT18       --------->bZIP60(1)                                          --------->ALFIN1  --------->YAB1                                         ------->PIF5    ----------->RAV1(1)                                <---------TOE2(3)      --------->At4g35610         --------->ARR14(2)                                <---------TOE1(3) <---------ANAC58                 <---------ARR14(2)                                --------->MYB59<---------MYB52(1)<---------bZIP60(1)   ------>ZmHOX2a(1)          <---------YAB1        <---------AtMYB61 <---------ANAC58              <---------TOE2(3) --------->GT1        <------ZmHOX2a(2)  <-------PIF5  <---------At4g35610      <---------TOE1(3) <--   atggttaaaattttgatttttgagatcaaatgtttaggttgcaagtgcggttgcttcagcaacaatgacaccattgaatattgaggttcctccaaaccgt  24540700  Previous    Next  AGI:  At5g60930.1    Description:  chromosome-associated kinesin, putative. similar to KICP-02, microtubule motor [Arabidopsis thaliana] (TAIR:AT3G50240.1); similar to FRA1 (FRAGILE FIBER 1), microtubule motor [Arabidopsis thaliana] (TAIR:AT5G47820.1); similar to FRA1 (FRAGILE FIBER 1), microtubule motor [Arabidopsis thaliana] (TAIR:AT5G47820.2); similar to hypothetical protein OsJ_008067 [Oryza sativa (japonica cultivar-group)] (GB:EAZ24584.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61605.1); similar to hypothetical protein OsI_008726 [Oryza sativa (indica cultivar-group)] (GB:EAY87493.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752 Range:  from: 24532624    to: 24539737    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g60940.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62445.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 24540204    to: 24543038    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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