Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      <----------DOF2 ----->ZmHOX2a(2) -----ZmHOX2a(2) ------->GLK1(1) ------>ARR11(3) ------>AGP1 ---------ARR10 -------ARR14(2)                                                  <---------TOE1(2) ------>ARR14(2)                                         <---------ARR14(2) ------CCA1(2)                                           --------->ARR14(2) -TEIL                                                  <------ZmHOX2a(1) ->GLK1(2)                  <--------P                  ==============HOX2a_HOX2a ->ARR14(1)               ----------->GT1        <---------ARR14(2) -GLK1(2)            --------->YAB1        <---------ANAC58    ------>ZmHOX2a(2)  <---------ICU4 >ARR11(1)        --------->YAB1           <---------ANAC58------>ZmHOX2a(2)      --------->ATHB12 -ARR14(2)        <---------ICU4      <----------DOF2 <---------TOE2(3)<---------AHL20(2) >ARR14(2)     --------->YAB1  <---------ARR14(2)--------->ARR14(2)<---------YAB1--------->ICU4  ----   gatctactttctcttgttcataatcatatggtagatttgactttggcttcggatttgaggatcgatctcatgtttaatctgaaatgatttctatttcgat  24365500                                                      <---------MYB46(3)                                                    <---------WOX13(1)                                                  --------->ATHB12      --------->GLK1(2)        <---                                            <---------MYB52(1)         --------->ARR14(2)       <----            ---------->DOF2            <-----------GT1<------MYB46(1)  <---------GLK1(2)      <------        ---------->DOF2             <---------AHL20(2)<------MYB83  <---------HSFB2a(2)       <------     >>>>>>>>>TBF1                  --------->AHL20(2)----------->GT1  <---------ARR14(2)    -------- -->ZmHOX2a(2)               ----------->HVH21   <---------YAB1     --------->HSFB2a(2)      --------   cggagaagaagaaagaaaggaacgattttttgtgacatttatttctgttttttgattggttaaaagttttccagattctgacatcgattttagtatttat  24365600      --------------->AGL15     <-----------------AGL3     --------->TOE2(3)   --------->GLK1(2)  <---------GLK1(2)  <---------ARR14(2)  --------->ARR14(2)                         --------->YAB1                              --------->ARR11(3) --------GT1                            <---------YAB1                                   <---------ARR11(3) -----YAB1                          <---------ARR11(3)                                  --------->YAB1 ---AHL20(2)                        <---------GLK1(2)                                  <---------YAB1 ---ICU4                    <---------At4g35610                <---------MYB46(3) --------->CCA1(2) ->ICU4                     --------->At4g35610            --------->ATHB12      <---------ARR11(3) ->AHL20(2)            <---------At4g35610--------->WOX13(1)<------------CBF     --------->ARR11(1)   tacagattcttaatttgggttttgcatcggagctacaagattatcattcatctttggaaactcattggtttgggtaaatgaaagatttgatgatcatgtt  24365700                           <-------TEIL                          --------->ARR14(1)                         --------->ARR14(2)                         <---------ARR14(2)                   <---------WOX13(1)                  <------------CBF                 --------->ATHB12               <---------WOX13(1)                       <------------CBF              <------------CBF         <---------ARR11(3)             --------->ATHB12          --------->ARR11(3)               ------->GAMYB      <---------ARR14(2)            <---------YAB1--------->CCA1(2)      --------->CCA1(2)     --------->MYB46(3)  <---------GLK1(2)     <------------CBF    --------->ARR11(1) ---------->DOF2          --------->MYB52(1)    --------->ARR14(2)   cttcttatattgttttgattgattgaagattcgatggataagataataaagagatggagattgttttggagcaacggtcgaaatcagtgtccagatactg  24365800                   ---------->DOF2                 <---------TOE2(3)                 <---------YAB1              <---------ATHB12          --------------->AGL15          ------------>CBF          <---------------AGL15         ----------------->AG         <-----------------AG         ----------------->AGL2                      >>>>>>>>>TBF1         ----------------->AGL1          <---------HSFB2a(2)         <-----------------AGL1          --------->HSFB2a(2)                        <------------CBF         ----------------->AGL3     <---------ICU4>>>>>>>>>TBF1                <---------ANAC46       --------->WRKY38(1)    <----------DOF2  >>>>>>>>>TBF1       <XXXXXXXXXXXXXXXXXXXXMIR866-5P   ggacaagagttgcccaattaagaaagacttgtctttgatacttacagaagaagaagaagaagagtcttgacaaaatttgttgtttgtattgaaatagttg  24365900               <---------GLK1(2)           --------->LBD16             <------MYB83                 <---------ANAC46                                     <-----             <------MYB46(1)             --------->At4g35610                                xxxxxxxxx           <--------P                    <---------At4g35610                                <--------          <-------GAMYB                  <------NtERF2                                   <---------At4g35610         --------->MYB55(2)              <---------LBD16                              <---------At4g35610         <---------MYB46(3)             <---------ERF1                                xxxxxxxxxxxxxxx        <---------TOE2(3)              <---------RRTF1(3)                          <---------At4g35610        <---------AtMYB61              <---------RAP2.3(3)                      <---------At4g35610      <---------ANAC46                 <---------DEAR3(1)                    <---------At4g35610  <--   <-----------RAV1(1)         --------->TOE2(3)------------------------>ANAC81 xxxxxxxxxxxxxxxx>smallRNA(i)   tttttgtgttgtggttggattctttgtattatacattaatggctgcggaagagcattcgaataagagaagagaagtctctgcttctgcttctgcttctgc  24366000                                                                   <------ZmHOX2a(2)                                                                  <---------ARR14(2)                                         <---------TOE2(3)        --------->ARR14(2)                                     <------ZmHOX2a(1)         <------MYB83                                  <------ZmHOX2a(1)            <------MYB46(1) <---------At4g35610            --------->ALFIN1         <-----------RAV1(2) ----At4g35610               <------ZmHOX2a(1)   <---------WRKY38(1)------>ZmHOX2a(2) xxxxxxx>smallRNA(i)        <------MYB83<---------DOF5.7(2)  --------->ALFIN1                       < -At4g35610                 <------MYB46(1)      <---------WRKY12 --------->ARR11(3)               -- x>smallRNA(i)            <--------P =====================================HOX2a_HOX2a              -- -------At4g35610     <---------ANAC46  --------->MYB52(1)   <--------P              ----------------   ttctgcttctgtagttgtgaatttgagggtaggagaggaggataacgatggtcatcgcctcaggttgggatctagtgactcagttctccctggtcttatc  24366100                          <---------ANAC58                          <---------ANAC58        <---------ANAC58  <---------bZIP60(2) <---------ANAC58            <---------ANAC58  <---------ANAC58    <---------ANAC46         ------>ZmHOX2a(1)  <---------ANAC58    <---------ANAC58      <---------YAB1 ---------TGA2(2) <---------ANAC58         <-----------GT1 --------->HVH21  <---------ANAC58      <---------GLK1(2)<---------ANAC46 --------->TGA1------->GAMYB           <---------At4g35610 ----->WRI1 <-----------GT1        <-----------HVH21 <-----------HVH21             >>>>>>>>>>WRKY26   gatgacgttgctcttaactgtcttgcttgggttccaaggtcagattatccttccttgtcatgtgtaaacaagaagtacaataagttgatcaacagtggtc  24366200                                                                          <---------TOE2(3)                                    --------->ARR11(3)                 <--------P                                    --------->ARR14(2)                 <---------WOX13(1)                                    <---------ARR14(2)                <-------GAMYB                                    <---------ARR11(3)                <---------ANAC58                                    --------->GLK1(2)                 <---------ANAC58                                    <-----------ARR10                --------->MYB55(2)                                 <---------ANAC46                    --------->MYB52(2)                                 <---------ANAC58                    <------MYB83                                 <---------ANAC58                    <---------MYB46(3)                               <---------ZAT18                       <------MYB46(1)                               <---------ZAT14                      --------->MYB111(1)                               --------->ZAT14                      <---------AtMYB61      ----------             ---------->DOF2   --------->ZAT18             =================================HOX2a_HOX2a       <----------DOF2    <---------ARR14(2)               ------>ZmHOX2a(2)               ==========      <---------ANAC58 <---------ANAC46            <---------ANAC46<--------P           --------->YAB1      <---------ANAC58<---------LBD16         <---------AtLEC2   <---------MYB46(3)  ------>ZmHOX2a(1)   atttgtttgctttgagaaaggaattggggatagtggagtatcttgttttcatggtttgtgatccgagaggttggttgatgttttctcctatgaaaaagaa  24366300                           =====================MYC_MYB                           =================================bZIP_DOF                           <---------O2                           <---------bZIP60(2)                           <---------TGA1a                           <---------ANAC58                           <---------ANAC46                        ----------->TGA1           <---------MYB59 <---------ANAC58      ---------->DOF2           --------->TOE1(3)               <-------MYC3           --------->TOE2(3)               ------->MYC3     <---------ZAT6     ----------->HVH21  <---------LBD16                              <---------HSFB2a(2)   <------MYB83        <-----------HVH21  --------->ANAC46                      <---------AtMYB61   <------MYB46(1)--------->ZAT18       ------->GAMYB                ----------->HVH21  --------->HSFB2a(2)  <---------AtMYB61 <---------ANAC46    <---------ALFIN1           <---------At4g35610 <---------LBD16 >DOF2    <---------ANAC55(2)          --------->MYB46(3)<----------DOF2     <----------DOF2 ====================================bZIP_DOF--------->LBD16       --------->At4g35610<---------LBD16   atggatggtgttacctaaaatgccctgtgacgagtgcttcaaccacgcggataaagagtctttggctgtagatgacgagcttttggtcttcgggagagag  24366400  Previous    Next  AGI:  At5g60570.1    Description:  kelch repeat-containing F-box family protein. similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G26930.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21832.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 24365939    to: 24367266    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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