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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ANAC58
<---------
ANAC58
<----------
DOF2
<---------
At4g35610
--------->
ARR11(3)
--------->
ZAT2
<---------
ARR11(3)
--------->
At4g35610
--------->
HSFB2a(2)
<----------
DOF2
<------
NtERF2
--------->
ZAT6
<---------
HSFB2a(2)
<---------
ZAT2
------>
NtERF2
<---------
ZAT2
--------->
ARR14(2)
--------->
At4g35610
--------->
ANAC46
<-------
TEIL
<---------
ARR14(2)
<---------
At4g35610
--------->
RAP2.6(2)
<---------
ARR14(2)
<----
ttttgaaataggttctgcaagagcttttgcttcagctcctttccatttccatctaggcgccat
ggaattgag
ctgcatatatagcactaaaaatcaaacc
24268200
<--
<--
--------->
ANAC58
<---------
GLK1(1)
--------->
ANAC58
<----------
DOF2
--------->
GLK1(1)
--------->
ANAC46
-
---------->
DOF2
--------->
YAB1
--------->
At4g35610
<--
---------->
DOF2
--------->
REM1(1)
<------
ZmHOX2a(1)
--------->
ZAT6
<---
----------------->
AGL1
------>
MYB83
--------->
TOE1(2)
<-----------
HVH21
------
-----
DAG2
----------->
GT1
------>
MYB46(1)
--------->
TOE2(2)
<---------
ICU4
<-------
ttttgaccaaaagatgtaaaagcttttcttagtctattaccaactacaactcttataatctaggaaatcagataaacattgtcactacgacatagttgtt
24268300
--------->
ARR11(3)
<---------
TOE2(3)
<---------
TOE1(3)
---------------
AGL1
-------
TOE2(3)
-------->
TOE2(3)
<----------
DOF2
-------
TOE1(3)
<---------
YAB1
------
DOF5.7(2)
<----------
DOF2
<---------
DAG2
--
--->
DOF5.7(2)
<---------
ARR11(3)
<----------
DOF2
--------->
WOX13(1)
--
MYB46(3)
<------
ZmHOX2a(1)
--------->
ARR11(3)
<---------
ALFIN1
------------>
CBF
aacgtttaaggtatcttgaagaaccaagtaggaattggaatgagcaaaaccaagagcttttgattcttttcccacttttgtattcaaaaatcaatcgtct
24268400
--------->
YAB1
--------->
WOX13(1)
------------>
CBF
--------->
ANAC58
---
----------->
HVH21
--------->
ANAC58
-----
----------->
GT1
<---------
RVE1(1)
<---------
WOX13(1)
<----
<---------
ARR14(2)
<---------
CCA1(1)
<---------
YAB1
<---------
ATHB12
<----
--------->
ARR14(2)
--------->
ARR11(3)
<---------
AHL20(2)
-----
--------->
At4g35610
<---------
ARR11(3)
<---------
AHL20(2)
-----
<---------
At4g35610
---------->
DOF2
----------->
GT1
<------------
CBF
------>
ZmHOX2a(1)
-------->
DOF2
--------->
AtLEC2
<---------
TOE2(3)
--------->
AHL20(2)
---------->
ID1
atgaagcggaaactgtgacattcaaattcacaacaaaggtattttgaaatagtaaacacattttaattgaagaagcaatcacattcagacttgtcctcac
24268500
--------->
ICU4
--------->
ANAC58
<---------
HSFB2a(2)
--------->
ANAC46
<---------
WOX13(1)
--------->
HSFB2a(2)
-------->
HVH21
<------
MYB46(1)
<------------
CBF
<------
ZmHOX2a(1)
---->
O2
----------->
GT1
<---------
ANAC58
<---------
ARR14(2)
-----
TGA1a
<------
MYB83
<---------
ANAC46
--------->
ARR14(2)
-----
O2
--------------->
AGL15
--------->
ANAC58
--------->
ATHB12
<------
ZmHOX2a(1)
---------
---->
ANAC55(2)
--------->
CCA1(2)
<---------
ANAC58
--------->
MYB52(1)
<---------
LBD16
---->
TGA1a
----------->
ARR10
----------->
RAV1(2)
----------->
GT1
--------->
CCA1(2)
<--------
atgacagtaaccatgaagagaagagatttggttaaaaacgaaac
ctggcgtattgatttatgaagaaaaaacagaggatatgaaggactcgggaagcagg
24268600
<---------
ICU4
--------->
ATHB51
-------->
ATHB1
--------->
ATHB12
<---------
ATHB51
--------->
AHL20(1)
<---------
ICU4
--------->
CCA1(2)
--------->
ANAC58
<---------
AHL20(2)
------>
ZmHOX2a(2)
--------->
ANAC55(2)
<------
ZmHOX2a(2)
<---------
ANAC55(2)
<---------
ARR14(2)
--------->
ANAC58
--------->
ICU4
--------->
ARR14(2)
--------->
ANAC55(1)
<---------
YAB1
----
<------
ZmHOX2a(1)
--------->
ANAC46
<---------
YAB1
-----
------------>
CBF
--------->
HSFB2a(2)
<---------
ZAT6
--------->
ICU4
---------
>
ZAT2
<---------
HSFB2a(2)
----------->
GT1
----------->
GT1
<--------
-
ZAT2
<---------
YAB1
<---------
ATHB12
----------->
GT1
<---------
ANAC55(2)
<---------
YAB1
gtctaca
atggagagagctatgcttcgaggatccaatggagagctatgcggtagtgaaaaac
gtaatctcgtaaaaattattgttgatttcgattgcaca
24268700
------>
ZmHOX2a(2)
<---------
GLK1(1)
--------->
GLK1(1)
<------
ZmHOX2a(2)
<---------
ARR11(3)
<---------
ARR14(2)
--------->
ARR14(2)
<-----------
ARR10
<---------
AGP1
--------->
GLK1(2)
--------->
ARR11(3)
--------->
ARR14(2)
<-------
TEIL
<---------
ARR14(2)
--------->
ARR14(1)
<---------
ARR11(3)
--------->
GLK1(2)
--------->
ARR11(3)
<---------
GLK1(2)
<---------
GLK1(2)
<---------
ARR14(2)
--------->
HSFB2a(1)
--------->
ARR11(1)
--------->
LBD16
----->
At5g28300
--------->
HSFC1(2)
--------->
HSFB2a(2)
<---------
CCA1(2)
<--
------>
GT1
<---------
HSFC1(2)
<------
ZmHOX2a(2)
--------->
ARR14(2)
--------->
LBD16
>
ZAT18
<---------
HSFB2a(1)
==============
HOX2a_HOX2a
--------->
CCA1(2)
<---------
LBD16
-
ZAT14
---------->
DOF2
----------->
ARR10
<------
ZmHOX2a(1)
----------->
ARR10
----------->
RAV1(2)
gtgaaaatagaaaagaaatagccacgaagattcttcgaaatcgagag
gaagagatcgagaattgaaacgagattcggatctctctctccctggggaagac
24268800
-
-
<
<
<---------
PCF2
<
<---------
ANAC58
--
<---------
ANAC58
<--
--------->
ZAT2
----
<---------
At4g35610
<---------
AHL20(2)
--------->
At4g35610
<---------
AHL20(1)
-
----------->
RAV1(1)
<---------
AHL20(2)
<
----------->
HVH21
--------->
ALFIN1
--------->
AHL20(2)
>
--------->
LBD16
<-----------
RAV1(1)
--------->
AHL20(1)
<
<---------
LBD16
--------->
GLK1(2)
*
TSS
<---------
ZAT14
<---------
At4g35610
<-----
---------
HVH21
<---------
ZAT2
------>
NtERF2
--------->
ZAT14
--------->
At4g35610
------
agtcgcgcgactcgagcagcagagattgtggtgcctactgagtacctcgtgtga
agtctaaaaacagcgtcgttttcagctaaataaaattctacaaaaa
24268900
-------->
O2
-------->
bZIP60(1)
---------
O2
---------
bZIP60(1)
---------
ANAC46
--------->
STF1
-------
TGA2(2)
------->
TGA1
---------
-------->
TGA2(1)
<-----------
GT1
<------
NtERF2
<-----------
GT1
-----
---------
TGA2(1)
<---------
AHL20(2)
--------->
ZAT6
<---------
AHL20(2)
>>>>>>>>>
HY5
--------->
At4g35610
--------->
LBD16
--------->
AHL20(2)
-
---------
bZIP60(2)
<---------
At4g35610
--------->
ANAC58
--------->
AHL20(2)
<----
----
ICU4
<---------
YAB1
<-----------
TBP
--------->
ANAC58
<---------
AHL20(2)
-----
--->
YAB1
--------->
ICU4
------>
NtERF2
<---------
LBD16
<---------
ZAT14
--------->
YAB1
--
tgacgtcgtttggaataattttgtttgggctgcctatttatacatgtctaggcccgcgaattttaagtctacagtatttatttaaacatcatacacaaaa
24269000
<---------
ICU4
<-----------
GT1
--------->
YAB1
----------->
GT1
<---------
AHL20(2)
>
ANAC46
--------->
ICU4
--------->
AHL20(2)
---->
GLK1(2)
--------->
HSFC1(2)
<----------
DOF2
<---------
ICU4
-------->
LBD16
--------->
MYB52(1)
----------->
GT1
<---------
ANAC58
-----
ARR14(2)
----------->
GT1
--------->
MYB52(1)
--------->
AHL20(2)
--------->
TOE2(3)
---->
ARR14(2)
<---------
YAB1
<---------
MYB52(2)
<------
ZmHOX2a(1)
<---------
ANAC58
---------
------->
ANAC46
<-----------------
AGL1
<---------
HSFC1(2)
<------
ZmHOX2a(1)
<---------
AHL20(2)
<---
tccgaaacagataattttgattcaaattggtaactatcggaagtatcggatgagaaggaggaaaaaaatgctttgcttatttcattaattactaccttga
24269100
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AGI:
At5g60230.1
Description:
SEN2 (SPLICING ENDONUCLEASE 2); tRNA-intron endonuclease. Identical to tRNA-splicing endonuclease subunit Sen2-2 (SEN2) [Arabidopsis Thaliana] (GB:Q9LSS3;GB:Q3E887); similar to ATSEN1 (SPLICING ENDONUCLEASE 1), tRNA-intron endonuclease [Arabidopsis thaliana] (TAIR:AT3G45590.1); similar to ATSEN1 (SPLICING ENDONUCLEASE 1) [Arabidopsis thaliana] (TAIR:AT3G45590.2); similar to unknown [Populus trichocarpa] (GB:ABK93461.1); contains InterPro domain tRNA-intron endonuclease; (InterPro:IPR006676); contains InterPro domain tRNA intron endonuclease, catalytic C-terminal; (InterPro:IPR006677); contains InterPro domain Endonuclease TnsA, N-terminal/re
Range:
from: 24267317
to: 24268839
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At5g60240.1
Description:
unknown protein
Range:
from: 24268608
to: 24268854
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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