Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       <---------HSFB2a(2)                                                     --------->HSFB2a(2)                                                 <----------DOF2                                           --------->ANAC58                                 ---------    --------->YAB1                         --------->ANAC46                          <---------------AGL15    --------->TOE2(3)                      --------->ANAC58                          --------------->AGL15    --------->TOE1(3)                    ---------->DOF2  --------->HSFC1(2)        <---------------- ---->MYB46(3)                         ------>ZmHOX2a(1)  <---------HSFC1(2)        <---------------- --->ANAC46                  --------->ANAC46 <---------ALFIN1 --------->TOE2(3)  --------->AHL20(2) --ALFIN1               --------->YAB1--------->TOE2(3) <---------ARR11(3)     <---------ICU4    ----   cattaaccataacaaatctctcactatcaccacaaaacttcctaaacgccactttccagatgtttccataaatgcttctaacaattacatttttaggcaa  24234500                                                   ------>ZmHOX2a(2)                                                  <------ZmHOX2a(2)                                                 <---------ARR14(2)                                                 <---------AGP1                                                 --------->ARR14(2)                                                 --------->ARR11(3)                                                 <---------ARR11(3)                                                <------ZmHOX2a(1)                                               --------->HSFB2a(1)                                               <---------HSFC1(2)                                               --------->HSFC1(2)                                               <---------HSFB2a(1)                                     =====================HOX2a_HOX2a                                     ====================HOX2a_HOX2a                                     ------>ZmHOX2a(1)          --------->DAG2           ----------------->AGL1                              <------------- <----------DOF2            ----------->GT1 <------ZmHOX2a(1)                         --------------- >ANAC46 ---------->DOF2   ----------->GT1  =============HOX2a_HOX2a      <---------ARR11(3) -AG----------->GT1     --------->CCA1(2)   ==============HOX2a_HOX2a     --------->GLK1(2) -AGL1   XXXXXXXXXXXXXXXXXXXX>MIR2937--------->LBD16  ---------->DOF2     --------->ARR11(3) ----->MYB46(3)    ---------->DOF2 <-----------------AGL1        --------->AHL20(2) <-----------GT1   cgactttggtaaaaagctgttgaaagagatgggtaattcctgaagaggaaggatctaaaagtttcaataaactaaaaatctacatataaccaaaaacaga  24234600                                             --------->ZAT14                                        <--------P                                      <---------ANAC55(2)                           --------->ANAC46  <---------ZAT18                           <---------HSFB2a(2)                           --------->HSFB2a(2)                          <---------LBD16    <---------ZAT14                                        -                       --------->At4g35610   <-------TEIL               --------->YAB1              -                    <---------ATHB12  ----------->GT1      <----------DOF2                          -                  ------>MYB46(1)   <-----------RAV1(2) --------->ARR11(3)    --------->ANAC46  ----- <---------ZAT14  ------>MYB83   --------->YAB1         <---------ARR11(3)  ----------->RAV1(1) ----- --AGL15        <---------MYB59 --------->ICU4   <----------DOF2       <---------ATHB12       ------- -->AGL3     <-----------GT1--------->LBD16  --------->ZAT18         --------->WOX13(1) ------>ZmHOX2a(1)   gagagaagtgtatttttaccaaatcatctccggaatcatcaggtaagtacactttgaagaactttggaagacaatcatccacagaaattcctgttccaaa  24234700                                                                          --------->TOE2(3)                                                                         --------->YAB1                                                                    ------>ZmHOX2a(2)                                                                  --------->ARR14(2)                                                                  <---------AGP1                                --------->ATHB12                  --------->ARR14(3)                               <---------YAB1                     <---------ARR14(3)                             --------->ANAC55(2)                  <---------ARR11(3) -------->ANAC58             <---------ANAC55(2)                  --------->ARR11(3) ---------->GT1         <------MYB83                              <-----------ARR10 -------->ANAC58    <------ZmHOX2a(1)                             <---------ARR14(2) ---->ANAC58    --------->TOE2(2)                --------->MYB46(3)<------ZmHOX2a(2) ---->ANAC58    --------->TOE1(2) <---------WOX13(1)             --------->RVE1(1) --->DOF2 --------->YAB1<------MYB46(1)  --------->GLK1(2)    ---------->DOF2             ---------->DOF2   gcaagaaaaaaatcagaacataggataggttatgtgattggagaatcaagaacaaacaatagcataaagatcttaacataaaaacaagagtctaaagaag  24234800                                                                                             <-------                                                                                          <---------ARR11(3)                                               ---------->DOF2                            --------->ARR11(3)                                             <---------ZAT6                           ---------->DOF2                               --------->TOE2(3)                                  ----------->GT1                       <----------DOF2 <----------DOF2                           --------->DAG2              <---------ICU4   --------->TOE1(3)       ----------->GT1          ---------->DOF2------   aaacctctgttcatcatcttcacctctttgaaaccctaactcttttagtgaaagtgaaggtgaaaatggttcttgaaaatagaaaagtaaaagagctttg  24234900                 *TSS              <----------DOF2             ------>ZmHOX2a(2)            <------ZmHOX2a(2)           --------->ARR14(2)                                                           ----------->TBP           <---------ARR11(3)          <---------DAG2                                 ---------------      ------>ZmHOX2a(2)                <---------------AGL15                          <--------------     <------ZmHOX2a(2)                 ==============================================================     <---------GLK1(1)                 --------------->AGL15                         ----------------     --------->GLK1(1)                 ==============================================================    --------->ARR11(3)              <-----------GT1                                  <---------------    --------->ARR14(2)          <---------ARR11(3)                                   ----------------    <---------ARR14(2)   <----------DOF2        --------->YAB1                       <---------------    <---------ARR11(3)  <---------ANAC58 <-----------TBP                             <---------------    <---------AGP1      <---------ANAC58<----------DOF2                   --------->HSFB2a(2)-------- ---DOF2   --------->ARR11(3)   <---------GLK1(2)                <------------CBF    <--------------- ----->GT1 <---------ARR14(2)   --------->ARR11(3)             <---------ZAT14   <------------CBF   ttaatagatctccgatcttttggtttgctttagagattttgccttttgtagcataacacagagactgtattgtcttctaggcttattgctacaaatggaa  24235000 --------->AHL20(2)                                                                             ----- >AGL15                                                                                         ===== -AGL15                                                                                  ------>MYB46(1) ==MADS_MADS       <---------DAG2                <---------ARR14(2)                    --------->AtMYB61 ->AGL2            <----------DOF2               --------->ARR14(2)                    <---------MYB59 =MADS_MADS    <---------MYB111(1)            --------->MYB46(3)                      --------->MYB46(3) --AGL3   --------->At4g35610               ------>MYB83 --------->AHL20(2)     <---------YAB1------>MYB46(1) ->AGL3 ------->MYC3                        --------->MYB52(1)            <---------AHL20(1)--------- --AG   <-------MYC2                        ------>MYB46(1)               --------->AHL20(1)<-------- --AGL1 <-------MYC3                      <---------MYB59<---------AHL20(2)    <-----------GT1------>MYB83 --->GT1------->MYC4                     --------->DEAR3(2)            --------->AHL20(2)------>MYB83 --AGL2 ------->MYC2                    ------->TEIL<---------YAB1 ----------->GT1 ------>ZmHOX2a(1)<   aaataaaacatgtgctaactacttttacttcaatgctccatgaaccgaaccgatatgattttaatcaaaccgaaaaaatattatcctaaccaaaccaaac  24235100                                                                                    --------->TOE2(2)                                                                                    --------->TOE1(3)                                                                                    --------->TOE1(2)                                                                                   ----------->RAV1(2)                                                                              <---------ICU4                                                                              --------->YAB1                               <---------AHL20(2)   ------------>CBF         <---------ATHB51 ---------->DOF2              <---------AHL20(2)  ------>NtERF2          ------------>CBF ------------>AGL3 <---------AHL20(2)          <---------LBD16   <---------------AGL15 ================================================================================MADS_MADS >AtMYB61         --------->AHL20(2)      ---------->DOF2        <----------DOF2 <-----------GT1 -MYB59 <---------WRKY38(1)   --------->AHL20(2)<---------RAP2.6(2)--------->AHL20(2)               < ---------ATHB12--------->GLK1(2)      <----------DOF2  <---------ATHB12--------->YAB1    <---------YAB1   caataaagggtgaacgagaatttaaaattcaaataaatgggctttaaagtccggcccaatcgatttgctttaaatgacaataataacctgagattataga  24235200                                                                --------->GLK1(2)                                                               --------->KAN4(2)                                                              <---------HSFB2a(1)                                                              <---------GLK1(1)                                                              <---------KAN4(1)                                                              --------->GLK1(1)                                                              --------->HSFB2a(1)                                                              --------->KAN4(1)                                                              <----------TaMYB80           <------ZmHOX2a(2)                                 --------->ARR11(3)          --------->ARR11(3)                                 ---------->TaMYB80          --------->ARR14(2)                                 <---------ARR11(3)          <---------ARR11(3)                                 <---------KAN4(2)          <---------ARR14(2)                                 <---------ARR14(2)        *TSS------>ZmHOX2a(2)                                --------->ARR14(2)    <---------MYB46(3)                                     <------NtERF2    <------MYB83<----------DOF2                           --------->LBD16    <---------DEAR3(2)                                    <------NtERF2                       <------NtERF2    <------MYB46(1)                                      <---------LBD16       <---------CCA1(2)  <---------MYB52(1)               <-----------GT1      <---------LBD16   ------->GAMYB  --------->MYB46(3) ---------HSFB2a(1)             <-----------GT1        ------>NtERF2     --------->MYB46(3)  --------   gaacgttggtccgatcttctttcaatttcaagtttttcaacctcttcccgcttacgaggccgggatattctatcaacagtcgtctcttccatcggccgaa  24235300                                                                                                -----                                                                                                =====                                                                                                =====                                                                                               <-----                                                                                           <---------GLK1(1)                                                                                           --------->GLK1(1)                                                                                          <---------ARR14(2)                     <---------GLK1(1)                                                  --------->LBD16                    --------->ARR11(3)                                                 <---------ANAC55(2)                    <---------GLK1(2)                                                  --------->ANAC55(2)                    --------->ARR14(2)                                                 <---------ANAC46                    <---------ARR14(2)                                             <---------GLK1(1)                   <------ZmHOX2a(1)         <---------GLK1(2)                     <---------ARR14(2)              ------>MYB83                   <---------ARR11(3)                    --------->ARR14(2)           --------->DEAR3(2)                --------->ARR11(3)                   ===================          <---------At5g28300               <---------RVE1(1)                     ===================         <-----------GT1                   ----------->ARR10              ------>MYB46(1) --------->ARR14(2)       <----------DOF2                 --------->LBD16         ----------->GT1    <------ZmHOX2a(1) - ->RAP2.6(2)  ------>MYB46(1)  --------->REM1(1)       <---------ZAT6     ------>MYB83<---------LBD16   caatttccgatttaccgactaggattttcgcctacaacttccgaagagattttctcagtgtaagtttgaaaaaacctagctataggattccggatttcct  24235400  Previous    Next  AGI:  At5g60142.1    Description:  DNA binding. similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:AT5G60130.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76392.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) Range:  from: 24233406    to: 24234917    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g60150.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO21780.1) Range:  from: 24235208    to: 24240592    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version