Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    --------->CCA1(2)                                  <---------GLK1(1)                                 --------->ARR11(3)                                 <---------ARR14(2)                                 <---------ARR11(3)                                 --------->ARR11(1)                                 --------->ARR14(2)                                    --------->TOE2(3)                             ---------->DOF2                                         <---------ARR11(3)     <---------AtLEC2   <---------------AGL15                                        --------->ARR11(3) <---------GLK1(1)      --------------->AGL15                                        --------->AHL20(1) --------->GLK1(1)     ----------------->AGL3                                       --------->RVE1(1) ------TOE2(3)        <<<<<<<<<GATA-1                                               --------->CCA1(1) ------TOE1(3)       <-----------GT1                           --------->YAB1   --------->AHL20(2) ---------------->TaNAC69(2)<---------AHL20(2)     <---------ICU4             --------->ANAC58 -ZAT6             <---------AHL20(2)             <---------YAB1              --------->ANAC58   <---   agggtttccatgtctctatattttatctatataaagatatgcctaagagtttataattccatcactcataagattaatgcaagaaaatatcttagagact  24156900                                                                                           <---------                                                                                      --------->YAB1                                                                                --------->YAB1                                                                               <---------AHL20(2)           <---------CCA1(1)                                                   --------->AHL20(2)           <---------RVE1(1)                                           <---------ALFIN1 <---------YAB1          --------->ARR11(3)                                          --------->ZAT14 <---------ICU4          <---------ARR11(3)               --------->GLK1(1)          <---------ZAT14 <--------HAHB4          <---------AHL20(1)               <---------GLK1(1)        --------->ANAC46 <---------YAB1          --------->AHL20(1)   <---------YAB1                     <-----------GT1  <---------ICU4         --------->YAB1--------->TOE2(3)  --------->ARR11(3)   <---------ARR14(2)  --------->YAB1    <-------TEIL     <---------YAB1       <---------ARR11(3)   --------->ARR14(2) --------->ICU4 ------REM1(2)      --------->KAN4(2)   <---------TOE2(3)   --------->LBD16  <----------DOF2   acaaggttcaaagatatttgtttattcttagttatgttttctaagatttctctaaattttgcccgaattcacaacacagctttaattatcattatactct  24157000                                                                                         --------->At5g28300                                                                                  <---------YAB1                                                                             --------->YAB1                                                                             -------->ATHB1                                                                             <---------ICU4                                                                       --------->YAB1   ----------->GT1                           --------->WOX13(1)                         <---------YAB1   --------->ANAC46             --------->ANAC58 --------->YAB1                  --------->YAB1 --------->ATHB12     --- --GT1       --------->ANAC58<---------ATHB12           <---------ARR11(3)  <---------YAB1    -------   tccagttttatctgtaagaaactagaatgcaatcagactcattgttatgcgatagcatgatcacttatagttatgaaaatcattgttatacggtaacata  24157100                                                                                              -------                                                                               --------->LBD16<------                                                                               <------NtERF2  <------                                                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                              --------->LBD16 -------                                                                             <---------LBD16 --------                                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                          <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                         --------->ATERF1(1)<xxxxxxxx                                                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                        <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                        <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                                       <---------ANAC58   --------->LBD16        <---------AHL20(2)                                             <---------ANAC58  <xxxxxxxxxxx   <---------AHL20(1)                                               <xxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->AHL20(1)                                             --------->MYB52(1)     <xxxxxxxxxxx   --------->ARR11(3)                          ----------->GT1    <---------ICU4<xxxxxxxxxxxxxxxxsmallRNA(s) -------->GT1                     --------->AHL20(2)             <---------ATHB51<xxxxxxxxxxxxxxxxxxx -->ARR11(3)         --------->ANAC46         <---------TOE2(3)  <---------AHL20(2)     <xxxxxxxxxxxx   ttgaaaatattgaattgctatacaccgaatggccaagtatatataaccaaggtaaaaatatgtcaaaataatggcttcgcccgggttcgaaccggagacc  24157200                              --------->ANAC46                              <xxxxxxxxxxxxxxxsmallRNA(se3)                             <xxxxxxxxxxxxxxxxsmallRNA(i)                             <xxxxxxxxxxxxxxxxsmallRNA(se3)                            <xxxxxxxxxxxxxxxxxsmallRNA(le3)                            <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                            <xxxxxxxxxxxxxxxxxsmallRNA(si3)                           <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                           <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                          <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          ------>MYB46(1)                          <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                          ------>MYB83                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       --------->MYB46(3)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               <---------O2<xxxxxxxxxxxxxxxxxxsmallRNA(si3)               =====================================MYC_MYB               <---------ANAC46               <---------ANAC55(2)               --------->O2<xxxxxxxxxxxxxxxsmallRNA(si3)               <---------bZIP60(1)               --------->ANAC55(2)               --------->bZIP60(1)           *TSS               =================MYC_MYB    -------->P               ================================================bZIP_DOF               <---------ANAC58            ------>MYB83               --------->TGA1a<xxxxxxxxxxxxxxxsmallRNA(si3)               <---------ANAC58    --------->ANAC58               <---------TGA1a<xxxxxxxxxxxxxxxsmallRNA(le3)               <---------bZIP60(2) --------->ANAC46                     <-----------TBP -->ARR14(3)   <---------ANAC55(1) --------->ANAC58                     --------->AHL20(2) ---ARR14(3)  <-----------------------TaNAC69(2)                        <---------AHL20(2) ---ARR11(3)  ----------->STF1--------->REM1(1)     <----------DOF2   --------->AHL20(2) -->ARR11(3)----------->HVH21<xxxxxxxxxxxxxxxxsmallRNA(s)             ----------->TBP ->GLK1(1)  ----------->TGA1<xxxxxxxxxxxxxxxxxsmallRNA(se3)          <---------AHL20(1) xxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->AHL20(1) xxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------ARR11(3)             - xxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ------------>CBF                  <-- xxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->TOE1(3)          --------->MYB52(1) xxxxxxxxxxsmallRNA(se3)------->GAMYB      ------>MYB46(1)  --------->TOE2(3)<-------TEIL       <----   ttcagtgtgttagactgacgtgataaccaactacaccacgaaacctacatgcttctttctaacctcaacaatatatatatacatatagataactgtttaa  24157300                       *TSS                     <------NtERF2          <----------DOF2                   <---------RAP2.6(2)     ------>ZmHOX2a(2)                   --------->ETT(1)       <---------RVE1(1)                   <---------ANAC46       <------ZmHOX2a(2)                   <---------DEAR3(1)    --------->ARR11(3)                  --------->RAP2.6(3)    <---------AGP1<----------DOF2           >>>>>>>>>>>>>>>>>LFY          --------->ARR14(2)     <---------ANAC46<---------At4g35610 <---------ARR11(3) ---------->GT1  <-----------HVH21       <---------ARR14(2) ----------CBF  --------->ALFIN1        <---------CCA1(2) -----YAB1<-----------GT1        <----------DOF2   <---------At4g35610   tattgtaacttgtaaccagtgtcggctaatttcgacttttgtagatctttttctgctctttctctctctctctctctctctctctctctctctctctctc  24157400                          ---------->DOF2                       <------NtERF2                      ------>NtERF2                     --------->RAP2.3(3)                     --------->RAP2.3(2)                    --------->RRTF1(1)                    --------->RAP2.3(1)                    <------NtERF2                   --------->LBD16                   <---------ATERF1(1)                   ------>NtERF2                  <---------ALFIN1                  --------->DEAR3(1)                                                           ------                  --------->ANAC46<-----------------------TaNAC69(2)                   ------>NtERF2-                 <---------LBD16  <---------HSFC1(2)         <---------ETT(2)         --------->ANAC46                 --------->MYB46(3)              <---------HSFB2a(1)      --------->CCA1(2)<---------YAB1                <---------ATERF1(1)             --------->GLK1(2)      ----------->ARR10   --------->ICU4      <-----------GT1--------->DEAR3(1)   ------>ZmHOX2a(2)  --------->ETT(2)      <---------ETT(2) -   ttgtattatttctatctcccccgccgtcgaaagagaaacgtcgatcggagaacctttgaaatgtcgactggattagatatgtctctcgacgacatgatcg  24157500                               <---------ALFIN1                             <---------ATERF1(1)                             ------>NtERF2                                         ------->GAMYB                            --------->PCF2                                         --------->TOE1(3)                            <---------TCP20                                        <---------------AGL15                            <---------TCP15(1)                                     --------->TOE2(3)                            --------->PCF5                                         --------------->AGL15                            --------->DEAR3(1)                                    ----------------->AGL1                           <------NtERF2                                          ----------------->AGL2                           --------->ATERF1(1)                                    <-----------------AGL1                         --------->ATERF1(2)                                   --------->MYB46(3)                         --------->DEAR3(1)                                    <---------MYB52(2)                         --------->RAP2.6(2)          ------>ZmHOX2a(2)        <---------MYB111(2)                        <------NtERF2                 <---------LBD16          <---------MYB55(2)                        --------->DEAR3(2)           <------ZmHOX2a(2)     ------>NtERF2                        --------->ATERF1(1)         <---------ARR14(2)     --------->LBD16                       <---------ATERF1(1)          --------->ARR14(2)     <------NtERF2                      --------->TCP16(1)          --------->LBD16         --------->ANAC46                      <---------PCF2<-------PIF5<---------LBD16<-----------HVH21------->GAMYB              <---------O2<---------ATERF1(1)  <------ZmHOX2a(2)          --------->RAP2.6(2)              <---------ANAC46<------NtERF2   --------->ARR14(2)          --------->RAP2.3(2)        --------->SPL7<---------ARR14(2)  <---------LBD16      <---------ARR14(2) <-----------------AG       <---------MYB52(1)<---------RAP2.6(2)  <---------ARR14(2)          --------->DEAR3(1)      --------->At5g28300<---------ATERF1(2)--------->LBD16    --------->ARR14(2)-------->P  <---------ARR14(2)  --------->ARR14(2)--------->TCP20 --------->LBD16   --------->RRTF1(2)  --------->ARR14(2)  --------->TCP20   --------->ARR14(2)--------->ARR14(2)   <---------ALFIN1 --------->MYB46(3)  --------->ATERF1(1)--------->TCP16(1)<---------ARR14(2) ----------->RAV1(1) >ZmHOX2a(2)  --------->O2------>NtERF2 <---------ARR14(2)--------->SPL7 --------->RAP2.3(1) <------- -------->ANAC58   --------->ALFIN1 ------->PIF5------>ZmHOX2a(2)--------->SPL7<---------MYB111(1)--- -------->ANAC58--------->ALFIN1    ----------------------->TaNAC69(2) --------->ANAC46      --------   ccaagaaccgtaagtctcgtggtggagccggccccgctcgtggaaccggatccggatccggaccgggtccgactcgccgcaacaaccctaatcggaaatc  24157600                                                                                           <---------                                                                                          ------>ZmHOX2a(2)                                                                                         <------ZmHOX2a(2)                                                                                        <---------ARR11(1)                                                                                        <-----------ARR10                   <---------ATHB12                                                     --------->ARR14(2)       --------->At4g35610                                                              <---------ARR11(3)     ------>ZmHOX2a(2)                                                                  <---------AGP1    <------ZmHOX2a(2)                                              <<<<<<<<<TBF1        <---------ARR14(2)   --------->ARR14(2)                                           <<<<<<<<<TBF1           --------->ARR11(3)   <-----------ARR10                                      <<<<<<<<<TBF1                <---------ARR14(1)   <---------ARR14(2)                              <------------------------ANAC81    --------->LBD16 --GLK1(1)        ------>MYB46(1) <---------ARR14(2)    <------------------------ANAC81<---------CCA1(2) ----->P          ------>MYB83    --------->ARR14(2) <----------DOF2                 <---------TOE1(2) ->GLK1(1)       --------->WOX13(1)         --------->REM1(1)<<<<<<<<<TBF1          <---------LBD16 -   aacccgatctgctccataccaatcagccaaggtccaaatccgttctacatctgttctttcttcttcttcttcttctctctagtttcgccggatctttctt  24157700               --------->ICU4             --------->YAB1            <-------TEIL    ------>ZmHOX2a(2)   --------->CCA1(2)   <------ZmHOX2a(2)  --------->AGP1                               <----------DOF2  <---------AGP1<---------ICU4         <---------TOE2(3)  <-----------ARR10                    <---------TOE1(3)  --------->ARR14(2)                  <---------DOF5.7(2)  <---------ARR11(3)                 ----------->HVH21                                 ----------->GT1  <---------ARR14(2)                 --------->WRKY12                               <---------ANAC55(2)  --------->ARR11(3)                 --------->WRKY38(1)                            <---------ANAC46 <---------CCA1(2)                  --------->DOF5.7(2)      <---------AtMYB61      <---------ANAC58 -DOF2    <---------ARR14(2)       <-------GAMYB          <----------DOF2           <---------ANAC58 ---------->ARR10  ----------->GT1<---------ANAC46   ---------->DOF2    --------->WOX13(1)   ctcagatctgccgattcataatggaaaatagactctgcgttgacgttttctttaaaaaagcttttggtgttgatcaatctctcaatacgtggaaaatatc  24157800  Previous    Next  AGI:  At5g59945.1    Description:  pre-tRNA. tRNA-Val (anticodon: AAC) Range:  from: 24157172    to: 24157245    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g59950.1    Description:  RNA and export factor-binding protein, putative. similar to RNA and export factor-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G02530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21699.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 24157323    to: 24159084    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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