Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               ------>MYB46(1)                                                             --------->MYB52(1)                                                             ------>MYB83                                                            --------->MYB55(1)                                                           <---------MYB46(2)                                             --------->GLK1(2)                                             <---------ARR14(2)                                       <----------ID1      <---------MYB59                                     <-----------GT1   <---------ARR14(2)                                 ------>MYB46(1)       --------->ARR14(2)            ---------->DOF2      ------>MYB83<-----------ARR10                      --------->YAB1--- <-----------GT1               <---------MYB59     <---------At4g35610       --------->ZAT6      <--- -----GLK1(2)          ----------->RAV1(2)   --------->ARR14(2) --------->TOE1(2)  <---------ATHB12   ttctcaccatttttcaaagctcaaaacctgataccaaattaacaacaaatctgagccgataccaaacgtactaatgctaacaccaataaacattgactaa  24130400                                                                               ------->GAMYB                                                                              --------->MYB46(3)                                                                              <---------MYB52(2)                                                                         --------->ANAC58                                                             <------NtERF2<---------ATHB12                             --------->ARR14(2)              <---------At4g35610                             <---------ARR14(2)              <---------ZAT2 --------->MYB52(1)           <----------DOF2  <------ZmHOX2a(1)       --------->ZAT14      --------->ANAC58 ------>YAB1          ---------->DOF2               <---------ZAT14     --------->WOX13(1) ------ATHB12   <---------ZAT6 <-------TEIL --------->ZAT18  --------->At4g35610 ------->TEIL   tcaaatttagtctcttttgtgttaaaaagaggattcatgcttcaaatgcacaactatagtggcagctaaatcgacaatcaacgaacttgattctaatatt  24130500                                ------->GAMYB                               --------->ANAC46                               --------->ANAC58                             --------->MYB52(1)                           <---------ATHB12                           --------->MYB46(3)                                                  ------                          --------->ANAC58                           <------------CBF          ------                       ------------>CBF                           ------>ZmHOX2a(2)           -------                   --------->MYB52(1)                            <------ZmHOX2a(2)            <------                   ------>MYB46(1)                              --------->AGP1               <-------           --------->YAB1 --------->ANAC58      --------->ANAC58<---------AGP1       --------->ANAC46         ------------>CBF--------->WOX13(1)     --------->ANAC58--------->ARR11(3)   --------->ANAC58 --------->ICU4    ------>MYB83--------->ANAC58 --------->ANAC46<---------ARR11(3)   --------->ANAC58   gaaatgaatacaacaataaccaaatggcaatcaacgaaacatagaactataagcaaactttcgatagatctaattgtattctggtccaagaaactaatgt  24130600                                                                          <---------WOX13(1)                                                                         <------------CBF                                                                        <---------ICU4                                                                        --------->ATHB12                                                                       --------->ICU4                                                                       <---------YAB1                                                                   <-----------TGA1                                                                  --------->ANAC55(1)                                                                  <---------O2                                                                  ================================bZIP_DOF                                                                  <---------bZIP60(1)                                                                  --------->bZIP60(1)             ---                                                                  ================================bZIP_DOF                                                                  --------->O2                  =====                                                                  --------->ANAC58              -----                                                                  --------->bZIP60(2)          <-----                                                                  --------->ANAC58             ======                                                                  --------->ANAC55(2)         -------                                                                  --------->TGA1a             -------                                                                  <---------TGA1a             <------                                                                  <---------ANAC55(2)         <------                                                                  --------->ANAC46           <-------                                                                <-----------GT1              -------- --->TOE2(3)                --------->TOE1(2)                <---------GLK1(1)    <---------ARR14(2) --->YAB1                 ------->TEIL                       --------->GLK1(1)--------->At4g35610 <-- ---->GT1              <---------YAB1                       <---------ARR14(2)<---------At4g35610 --- ---ZAT6     --------->At4g35610    <---------KAN4(2)=======================bZIP_DOF        --------- --TOE2(3)   <---------At4g35610--------->HSFB2a(2)  ---------->DOF2--------->TGA2(2)  ---------->DOF2   taatcgatagcatcgagctcaaactatgaaactacgagaattttcagagaattttaaaagcagatttcacgtcatgattgagcagaaatgaaagcagatc  24130700                                     ------>ZmHOX2a(2)                                    --------->GLK1(1)                                    <------ZmHOX2a(2) ---------->DOF2                    <---------GLK1(1) --->ZmHOX2a(1)                    <---------ARR14(3)                --------->RAP2.3(2) ==================HOX2a_HOX2a     <---------ARR11(3)                --------->RAP2.6(2) ->ZmHOX2a(2)                      <---------ARR14(2)                ----------->RAV1(1) -ZmHOX2a(2)                       --------->ARR11(3)                --------->DEAR3(1) ==================HOX2a_HOX2a     --------->ARR14(2)               --------->ATERF1(1) -->ARR14(2)                      --------->GLK1(1)                 --------->RAP2.3(1) -->ARR11(3)              <---------ZAT2                           <------NtERF2 ---ARR14(2)              --------->ZAT2                           <---------ATERF1(1) ---ARR11(3)    ---------->DOF2   <---------GLK1(1)                <---------At4g35610 --GLK1(1)  <------ZmHOX2a(1) --------->ALFIN1                     --------->ZAT2 ->GLK1(1)  ===============================HOX2a_HOX2a             <---------ZAT2 -------HSFB2a(2)         --------->At4g35610        --------->GLK1(1)           <---------LBD16 ------>HSFB2a(2)         <---------At4g35610        <---------GLK1(1)--------->LBD16 -->ARR10   ================================HOX2a_HOX2a            --------->At4g35610   ---------->DOF2   ctagaaaggaaacaggaataaagctcgtagctgtggagatctctctaacctttggaaatcgaaaatggcagccgcacaaaaactctggagcaaaagacga  24130800                                                                ------>NtERF2                                                               <---------DEAR3(1)                                                              <---------ZAT18                                                              --------->ATERF1(1)                                                        <------------CBF                                                       --------->ATHB12                                                      <---------AHL20(2)                                                      <---------YAB1        <----------DOF2                                                     <-----------TBP     ------->TEIL                                                   <---------DAG2<------NtERF2                                                   <----------DOF2    <---------YAB1                <                                                  <---------ANAC58<---------DAG2                  ---                                                  <---------ANAC58<----------DOF2                 <--                                           *TSS <-----------GT1<---------RAP2.6(2)                <--          <-----------GT1                <---------TOE1(3)   <---------ATERF1(1)       ----------->GT1   ---------->DOF2                       <---------TOE2(3)  <---------RAP2.3(3)   <---------ZAT14<---   agaggcaaagtttaacaagagaactaaatacaagatgcgaattagggtttttgctttttattggggcgccttatgaaactttactagactggttaatgga  24130900                                                                                      --------->ATHB12                                                                                     <---------AHL20(2)                                                                                <---------MYB52(1)                                                                                <------NtERF2                                                                               <-----------HVH21                                                                               ------>NtERF2                                                                              --------->RAP2.3(2)                                                                              --------->DEAR3(1)                                                                              --------->RAP2.3(3)           <----------DOF2                                                   --------->ATERF1(1)   <---------YAB1                                                            --------->ORA47(2)  --------->AHL20(2)                            <---------YAB1               --------->RAP2.3(1)  <---------AHL20(1)                          <---------ICU4               ==========================  <---------AHL20(2)                      <---------TOE2(3)<---------ARR14(2)--------->DEAR4(2)  --------->AHL20(1)                      <---------YAB1   <---------ARR11(3)--------->ERF1 --------->YAB1                  <---------ARR11(3)        --------->ARR11(3)<------NtERF2 ---------YAB1                   --------->ARR11(3)      ----------->ARR10 ------->GAMYB ------>YAB1                    --------->RVE1(1)<-----------GT1          --------->MYB46(3) ------HAHB4               --------->TOE2(3)--------->TOE2(3)      <---------CCA1(2) --------->AHL20(2) -------ICU4               --------->YAB1<---------DOF5.7(2) ------>ZmHOX2a(2)--------->RRTF1(3) ---ZmHOX2a(2)          <----------DOF2--------->DOF5.7(2) --------->ARR14(2)--------->RRTF1(1)  ----   tcattataatgggctttattttgggcctttcttaatatctcgttaacattatcacagcctagatcgtctatatccaagcgccgtcgtttaattggaggta  24131000                                     <-----------HVH21                                     <-----------TGA1      ==================================bZIP_DOF      <---------TGA1a            <----------DOF2      ==================================bZIP_DOF    --------->REM1(1)      --------->TGA1a <---------TOE2(3)  <---------At4g35610                    <---------DAG2 ===============MYC_MYB      <----------DOF2  --------->ZAT14                   <----------DOF2 ------->ARR10        <---------TOE1(3)  --------->At4g35610              <-----------GT1           <   agactctcacttgtgtttcaaattcaggtttctttctttcgtcagcagtatgctacaactttgcacatctccagtttttctgcttttctcagtttttgaa  24131100                                                   <---------ATHB12                                                 --------->WOX13(1)                                         --------->AtMYB61                                         ----------->RAV1(1)                                        --------->ANAC46                                      --------->ZAT6                               <---------At4g35610                                      --------->ANAC46                    <----------DOF2                                 --------->At4g35610                     <---------DAG2                                 <---------At4g35610                     <----------DOF2         <---                         =============================HOX2a_HOX2a      ------>NtERF2        ---------                         <------ZmHOX2a(1)     <------ZmHOX2a(2)      <---------RAP2.6(2)  <---------GLK1(2) ---------YAB1        <---------AtLEC2--------->REM1(1)       <---------At4g35610  --------->At4g35610   tttttattctcaaactgttctcttgcaggactctctgcttacaccacagatcaatcactgaggcaactgtttgcgccttttggtcagattacagaatcga  24131200                 <---------ANAC55(2)            --------->YAB1                                                         --------->MYB52(1)           --------->ICU4                                                        <---------MYB52(2)     <---------RAP2.6(2)                                                         --------->MYB46(3)    <---------At5g28300                                                         --------->At4g35610    <---------LBD16                  <---------ANAC46                          --------->ANAC58   <--   <-----------GT1      <---------ZAT14                                        --------->ANAC58 ----- ------TOE1(2)   --------->ANAC55(2) <---------ANAC58                      <------ZmHOX2a(1)    ----- >GLK1(2)  <---------YAB1            <---------ANAC58                    <---------TOE2(3)    <------   atgttttacggctatgattatgtgtctgaactaattgtgtcgtttgtatgctactgtcttatagctcgtcttattaaggaccagcaaacgcagagaccta  24131300  Previous    Next  AGI:  At5g59850.1    Description:  40S ribosomal protein S15A (RPS15aF). Identical to 40S ribosomal protein S15a-1 (RPS15AF) [Arabidopsis Thaliana] (GB:P42798;GB:Q7GD83); similar to RPS15A (RIBOSOMAL PROTEIN S15A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G07770.1); similar to RPS15A (RIBOSOMAL PROTEIN S15A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G07770.2); similar to unknown [Solanum tuberosum] (GB:ABA46758.1); contains InterPro domain Ribosomal protein S8; (InterPro:IPR000630) Range:  from: 24129426    to: 24130843    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g59860.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G46020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21708.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 24130688    to: 24131675    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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