Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    -                                                                                                   <-                                                                                                  ---                                                                                                 <---                                                   --------->ANAC58                              ----                                                   --------->ANAC46                              ----                                           <---------YAB1                                       <----                                         --------->YAB1                                     <-------- ----->DOF2---------->DOF2          ----------->GT1--------->ANAC58                         ---------   aagaaatttgtaagaaaggggagacatttcacagagaatggtatcatgaaaacaagacagacctgaagaacaccgtagattacaagagtagacataatgc  24089900   --------->TOE1(2)   --------->ATHB51 ---------ARR14(2)  --------->TOE2(3) -------->ARR14(2)  <---------------AGL15 -----NtERF2        --------------->AGL15           --------------->AGL15 ------>LBD16      =================================================MADS_MADS                     --- ------ANAC46      ----------------->AGL3           <---------------AGL15                         --- ----->LBD16   <---------DAG2                  --------->DOF5.7(2)                   --------->ZAT14 ----->RAP2.6(2)<----------DOF2                <---------MYB52(1)             <---------ALFIN1    --- -----LBD16 <-----------GT1            --------->ANAC46 <---------ICU4       --------->MYB46(3)  ---- -ICU4   --------->ARR14(2)       <----------DOF2  <-----------------AGL2   ------>MYB83  --------->ANAC46 ->DOF2  <---------ARR14(2)  ---------->ID1------>ZmHOX2a(1)                ------>MYB46(1)     -----   cggaaactgcgaatacacctttccataatttgttctctttcactcctccgtttactaattctggctcagccatggaccatccacctctgaacacaaaacc  24090000         ------->TEIL     <---------TOE2(3)           --------->ZAT2    --------->YAB1     --------->ANAC46                                                         -----  <---------YAB1       --------->ANAC58                                                         <---- --->MYB46(1)          --------->ANAC58                                                         <---- -------->RAV1(1)   <---------ATHB12                                --------->At5g28300    <--------- --->MYB83   ------>MYB83       --------->ANAC58                 <---------At5g28300   <---------ALFIN1 ----->ANAC46------>MYB46(1)    --------->ANAC58      <---------ANAC58               <---------ALFIN1 ---->MYB46(3)<-----------ARR10 --------->ANAC46      <---------ANAC58           --------->At5g28300   caccattaatgaaccaaatctaatcacacaatacaagctccgattttgtaatgtaagcgtgagaaatcacagtgactagtgactgtaacacacctttgag  24090100                                                          ----------->GT1                                                     ----------->ARR10                                                  <-----------HVH21                        <---------WOX13(1)       --------->LBD16                       --------->ARR14(2)      <---------LBD16                  --------->MYB52(1)           ------>ZmHOX2a(2)     --------->GLK1(1) <---------ARR14(2)    <---------ARR14(2) ---->ZAT2--------->ANAC58                   --------->ARR14(2)                              <------- -----At4g35610  ----------->HVH21   --------->MYB52(1) <------ZmHOX2a(2)              --------->ANAC46 -----ZAT2--------->ANAC46<------MYB46(1)  ----------->HVH21                           --------->ANAC58 -DOF2    --------->ANAC58<------MYB83 --------->MYB46(3)------>ZmHOX2a(2)             --------->ANAC58   ctcggagatttcaagctagacgacggattggtaagagtacaacggctgatccggtgagatcggagaaaaattgtctctgtctctctctcacgctcctttt  24090200                                            --------->MYB46(3)                                  --------->ARR14(2)                               =============================HOX2a_HOX2a                               ===================HOX2a_HOX2a                              <------ZmHOX2a(2)                                         <---------TOE2(3)              <---------ATERF1(1) <---------ARR14(2)                              <----------DOF2              ------>NtERF2   ==============================HOX2a_HOX2a           <---------DAG2             --------->DEAR3(1)------>ZmHOX2a(2)       <----------DOF2           *TSS  ==============           ------>NtERF2     <---------ARR14(2)      ------>ZmHOX2a(1)        ------>NtERF2        <-           --------->LBD16<---------HSFB2a(2)    --------->ORA47(1)           --------->LBD16     ---           <---------ATERF1(1)====================HOX2a_HOX2a             <-----------GT1         <--          <---------DEAR3(1) --------->ARR14(2) --------->DEAR3(1)    <---------MYB52(1)<---------TOE1(3)     <---------MYB52(1)   --------->HSFB2a(2)<---------ALFIN1        <----------DOF2<-----------TBP== ---DOF2 <---------LBD16----------->RAV1(2)------>ZmHOX2a(1)        --------->TOE2(3)  ---------->DOF2   gtaaaccgttctccggcgacttctccgtctggatccgatttgctcctccaccgtcctctttctctcaattcctttatttccgccctttttaaagttgtgt  24090300                             ------------>CBF                             --------->At4g35610                            --------->ANAC58                            --------->ANAC58                          --------->TGA2(2)                         <-----------TGA1                         <-----------HVH21                        --------->ANAC58                        --------->bZIP60(2)                        --------->O2                        --------->bZIP60(1)                        <---------bZIP60(1)                        ==========================bZIP_DOF                        ==========================bZIP_DOF                        <---------O2                        <<<<<<<<<<AtbZIP1                        <---------TGA1a                        --------->TGA1a---------->DOF2                           --------->ANAC55(2)   <---------TOE2(3)    --------->ANAC46                                   <---------ANAC46 =================================bZIP_DOF                              <---------ARR14(2) ------GAMYB            --------->ANAC58                               --------->GLK1(1) ------>MYB52(2)       <-----------bZIP910(1)                   <-----------RAV1(2)             ----- -------MYB46(3)   --------->ANAC46<----------ID1       ---------->DOF2<---------GLK1(1) --------->ARR11(3) =================================MYC_MYB ----------->GT1   <------ZmHOX2a(1)<---------MYB52(1) <----   tcgttgatgttttccaagtataggccacgtcagcaataagacaaaggtcaaaaccttctaaaggacccagagggtttccgtttatgtgatagttcttcat  24090400                                                                                                    -                                                        ----------->GT1                             -       --------->ALFIN1                       <----------ID1                                      ---       <-----------RAV1(1)                 ----------->TGA1                                       ---      <-------MYC3                      <---------TOE1(1)                                         ---      ------->MYC3                      <---------TOE2(1)                                <-----------GT1 ---->ICU4                         <---------------AtSPL8        --------->TOE2(3)       ---------->ID1 -----YAB1                   <---------MYB52(1)    ---------->DOF2------>ZmHOX2a(1)     <-----------GT1   gatcaacatgtgtggcccatgagaaacaccagttaagttagtacgatgacgacgaaagaagataaatcctaaactcgtggtcgtgatttttttcccttcc  24090500                                                                                           --------->ZAT2                                                                                       <---------TOE1(2)                                                                                     --------->TOE2(2)                                                                                     --------->TOE1(2)                                                                                   --------------->AtSPL3 *TSS                                                                             --------->ARR14(2) -------->TOE1(3)                                                          --------->At4g35610 -------->TOE2(3)                           <---------ANAC46            ---------->DOF2--------->SPL7 --->MYB46(1)                     --------->ARR11(3)               --------->CCA1(2) <---------SPL7-- --->MYB83                        <---------GLK1(2)               <----------ID1  --------->GLK1(2)<- ----->P                          <---------ARR14(2)          ---------->DOF2     <---------ARR14(2)-   aaccttaaaaatatgtctgaaattttaaaattttcagattttggttttgtgttgagaacaactccaaagagacgagaagcagcgaatcgtacgagcagag  24090600                                                            ----------->HVH21                                                          <---------At4g35610                                                    <----------DOF2           <---------ANAC58                                                 --------->ARR14(2)           <---------ANAC58                                                 <---------ARR11(1)           <---------ANAC46                                 <----------DOF2 <---------ARR14(2)    <---------YAB1                          <---------ARR14(2)     --------->GLK1(2)   --------->REM1(1)              <---------ANAC46   <---------DAG2  ------->TEIL    <---------At4g35610 ------->ARR11(3)         --------->ARR14(2)    <---------CCA1(2)--------->At4g35610          <------ --------ARR11(3)         <---------GLK1(2)     <---------ARR14(1)  <-------TEIL              <------ -------->CCA1(2)      <---------WOX13(1)    ------>ZmHOX2a(1)   --------->ZAT2              ------>ZmHOX2a(1)   agatatatgtttcattacgtcgatgatggattctgctttatatcatcctcgaatctttttcgctcacagcttcatcaatggcttgtatagttctcctagg  24090700                                                                                                    -                                                                                                    -                                                                                             --------                      <---------MYB52(1)                                                   <---------MYB52(1)                      <--------P                                                         ------>ZmHOX2a(1)                    <------MYB46(1)                               ------>ZmHOX2a(2)  <---------ARR14(2)                    <------MYB83                                  ==============================HOX2a_HOX2a       <---------ANAC58                                           ===================================       <---------ANAC58 --------->MYB52(2)           <---------ZAT6                  --------->ARR11(3)      <---------ICU4<---------MYB46(3)     <------ZmHOX2a(2)  <---------ZAT6         --------->ARR14(2) ---TOE2(2)<---------ANAC58               --------->ARR11(3)--------->YAB1           --------->GLK1(2) ---TOE1(2)<---------ANAC58              --------->GLK1(1)<---------ZAT14        --------->YAB1<-----   tttgctaatacttgctggagattggttagtcgttcaagttgggagatcaaggctagtgagaatagtgatcgcaatgtgttcgatgaaaatcctgttagga  24090800  Previous    Next  AGI:  At5g59740.1    Description:  UDP-galactose/UDP-glucose transporter-related. similar to ATUTR5/UTR5 (UDP-GALACTOSE TRANSPORTER 5), galactose transmembrane transporter [Arabidopsis thaliana] (TAIR:AT3G46180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21724.1); contains InterPro domain UAA transporter (InterPro:IPR013657) Range:  from: 24087277    to: 24090281    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g59750.1    Description:  riboflavin biosynthesis protein, putative. similar to ATGCH (ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II), 3,4-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II [Arabidopsis thaliana] (TAIR:AT5G64300.1); similar to GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAO72560.1); similar to hypothetical protein OsI_019555 [Oryza sativa (indica cultivar-group)] (GB:EAY98322.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21723.1); contains InterPro domain 3,4-Dihydroxy-2-butanone 4-phosphate synthase; (InterPro:IPR000422); contains InterPro do Range:  from: 24090501    to: 24092768    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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