Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    <---------------AGL15 <---------TOE2(3)                <----------DOF2 --------MYB52(1)                <-----------------AGL3                <---------ANAC58 --------DOF2               ---------->ID1                      <-----------HVH21    ------->GAMYB ---WRKY18(1)           <---------ANAC58                   --------->MYB46(3)       --------->ZAT6 --->HVH21              <---------ANAC58      --------->ZAT6   --------->AtMYB61  <-----------GT1 -WOX13(1)         <<<<<<<<<TBF1 --------->TOE2(3)  <----------DOF2    <---------ANAC58 --DOF2         <<<<<<<<<TBF1    --------------->AGL15    --------->ANAC46       <-----------GT1   ctttaggtttcggttttcttcttcttccttgtcttcctttactaggtaagactactttccactcaccatcactgcttgagtttttaacagtcgtttccat  24018800                                                                                                    -             --------->GLK1(2)                                                                      -          --------->ANAC46                                                            <---------MYB46(3)          --------->ANAC58                                                   --------->ATHB12       -          --------->ANAC58             <---------ALFIN1                      --------->YAB1       <--      --------->HSFB2a(2)             <---------ZAT14                        <---------ICU4       <--      <---------HSFB2a(2)           --------->ANAC46                         <--------ATHB1       <-- --------->HSFC1(2)          ------>ZmHOX2a(2)                              <---------YAB1       <--- <---------HSFC1(2)        <---------ARR11(3)            <---------TOE1(3)  --------->ICU4 <---------YAB1 <---------At4g35610       --------->AGP1                <---------TOE2(3)  <---------ATHB12     ---- --------->HSFB2a(1)     ------>ZmHOX2a(1)      --------->LBD16   --------->ANAC46  <---------MYB52(1)   tgaagcttccacaagaaactggttttcctgatctacttactccacagtcccccaaaattagggtttctactcaatgcaatgattccattggttccgatta  24018900           <---------AHL20(2)           --------->AHL20(2)         --------->WOX13(1)           --------->AHL20(1)       <---------YAB1           <---------AHL20(1)      <-----------GT1  --------->YAB1                  <---------ICU4 ----->MYB46(1)                   --------->YAB1 ----->MYB83                     --------->ICU4 -------->MYB52(1)             ------>MYB83 -------MYB111(1)            <---------MYB59                                        --------->ARR11(3) -------MYB59  <-----------GT1 ------>MYB46(1)       --------->ZAT6        <---------WOX13(1) -------MYB46(2)             --------->TOE2(3)  <---------ANAC58        <---------TOE2(3) ------ANAC55(2)        ------>ZmHOX2a(1)       <---------ANAC58    <----------DOF2 --------->GLK1(2) ----->ANAC55(2)       --------->TOE2(3)    <----------DOF2 ------>ZmHOX2a(2)       <---------ARR11(3)   cctaacatcacaataaatttcgattcctaaacctaattatcaatctctttgcttaactctgatctatctactttgagattgacaaaaatcttcgataccg  24019000                                                       <---------ANAC46                                                       <---------ANAC58                                                   <---------ANAC58                                                  --------->HSFC1(2)                                          <------ZmHOX2a(2)                                          ==================================HOX2a_HOX2a             <---------YAB1          <------ZmHOX2a(1) <---------ANAC58           --------->MYB52(1)     <------ZmHOX2a(1)<---------ANAC58         <---------MYB52(2)  -----          --------->TOE2(2)       ===============HOX2a_HOX2a              ---------->DOF2       -----          --------->TOE1(2)    <-----------RAV1(2)<---------HSFC1(2)   --------->ANAC58      --------     --------->AHL20(2)--------->ANAC58  --------->ARR11(3)            --------->ANAC58 <---------ARR14(2)     <---------AHL20(2)--------->ANAC58  <---------ARR11(3)          <------ZmHOX2a(1)  --------->ARR14(2)   agcaaaattaaacttacgattagagacgaaaacacaggaggaagatcgaagaagcttgcttgaaatacagaggaagcaaagaacgcttcgaatatgtggt  24019100                                         <-----------HVH21                                       ------>NtERF2                                      --------->DEAR3(1)                               <------MYB46(1)                                     <------NtERF2                                     ----------->GT1                                     <----------CDC5                                   <------MYB83                                   <---------DEAR3(1)                              <---------ARR11(3)                                  --------->ZAT18                                  <---------ARR14(2)                                  --------->SPL7                                   --------->ARR11(3)                               <---------ANAC58          *TSS                      --------->ARR14(2)                               <------MYB83 <---------LBD16                      ----------->ARR10                               <---------ANAC58         ----------->GT1      <---------HSFB2a(2)     --------->ZAT18           <------MYB46(1)<---------LBD16               --------->ANAC46     <---------ZAT18          --------->MYB111(2)      --------->DAG2       --------->ANAC58     <---------ZAT14          --------->MYB46(2)      ---------->DOF2       --------->ANAC58      <--     --------->ZAT14          <---------AtMYB61<---------DEAR3(1)   --------->ATHB12  --------->MYB59 ---->WRKY38(1)               <---------MYB46(3) <------NtERF2   <---------At4g35610--------->ARR14(1) ------>HVH21                 --------->MYB59<---------ANAC46    --------->At4g35610--------->CCA1(2) ->ALFIN1                     --------->MYB111(1)------>NtERF2 <-----------RAV1(2) --------->ARR11(1)   gaccgagtggactcagtgagacatttgtgagtttggtgcgccgagtcgcgcggcgataaagtgaatcagatgatttgtacgcgaagatttggtaaacagg  24019200                                         ---------->DOF2                                        ---------->DOF2                                       <---------ATHB12                                   ----------------->AGL3                                   ------------>CBF                               --------->ANAC58                               --------->ANAC58                              <-------TEIL                                   ------>ZmHOX2a(1)                            --------->ARR11(1)                             <---------ANAC46                            --------->ARR14(2)                             <---------ANAC58                          ----------->ARR10                              <-----------GT1           <---------ARR14(2)--------->ARR14(1)                --------->ZAT14           <---------YAB1           --------->ARR14(2)--------->CCA1(2)                ------->GAMYB<---------ANAC58          <------ZmHOX2a(1) <---------ARR14(2) <------NtERF2<---------At4g35610       <----------DOF2 ----------CBF           <---------HSFB2a(2)  ------>NtERF2 --------->At4g35610<---------MYB52(1)   <   tattgggctagaggaaatggaatgggtctagatacggcccaataaaggcgcgagatagagacaactgaagtcttgtttcctgttatttcttttgattttg  24019300                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                      --------->ZAT2                                                                      --------->At4g35610                                                                      <---------At4g35610                                                                 --------->bZIP60(2)         <-------                                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                            ----------->HVH21          <---------AHL20(2)                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <---------AHL20(2)                                         --------->MYB52(1)<---------WOX13(1)     <---------DAG2             --------->AHL20(1)         <---------ATHB12 --------->ATHB12--------------->AtSPL8       --------->TOE2(3)--------->At4g35610         xxxxxxxxxxxxxxxx>smallRNA(s)  <----------DOF2 <-- -----------GT1         <---------At4g35610       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------AHL20(2)   ttttactaatctaaatatactaaatcagcagtcaattttccaataactgatgcattcagtgattgacacatcagcttagtactacttttttattttttca  24019400                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                            <---------ALFIN1                                                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         ------>ZmHOX2a(2)                                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                        xxxxxxxxxxxxxxxx>smallRNA(i)                                                                        <------ZmHOX2a(2)                                                                        --------->GLK1(1)                                                                       <---------ARR11(3)                                                                       <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                                       --------->ARR11(3)                                                                       <---------ARR14(2)                                                                       --------->ARR14(2)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                    xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                   <---------ALFIN1                                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                   xxxxxxxxxxxxxxxx>smallRNA(i)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                  xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            <-----------GT1               <----------DOF2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                           <---------AHL20(2)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <---------ANAC46                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <---------ANAC58                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <x                 <---------ANAC58                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <--               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxx          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<----------DOF2   --------->ANAC58     <------------------------ANAC81  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    ---   --------->ANAC58    <---------AHL20(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <---------DAG2 <-----------GT1---------->ID1 <----------DOF2 xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxx ----GT1  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------ALFIN1< -------ICU4 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxx   tttttacgcatagtatgtgtcgtttttatttaactttgtttcattctcaaacgattttctctttcatccccacgatctccacatctccactttctctctt  24019500              <---------ZAT14 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxx>smallRNA(si3) xx>smallRNA(fl3) xxxsmallRNA(se3) xx>smallRNA(se3) xxsmallRNA(fl3)                                                              <----------DOF2 xxsmallRNA(se3)                                                            <-------TEIL x>smallRNA(fl3)                                                          <---------MYB52(1)<-------- x>smallRNA(se3)                                                        --------->MYB59  xxxxxxxxxxxx xxsmallRNA(si3)                                                        <---------------AtSPL8 >smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------HSFB2a(2)       --------->ARR11(3)                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxx>smallRNA(i2)    ---------->DOF2       <---------YAB1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------>HSFB2a(2) ----------->GT1                 --------->TOE2(3) <---------GLK1(1) --------->At4g35610 xxxxxxx>smallRNA(si3)  <---------ARR11(3)       <---------ICU4     --------->GLK1(1) <---------At4g35610 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------GLK1(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------ xxxxxxxxxxx>smallRNA(i2) --------->TOE2(3)     <---------YAB1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   ccaaaaactccatgactactgtgtaaaatctcaaagatgggtttctcaacatcattaatcgattactcagaaatcaggtactttgttcatctcaatgaac  24019600                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                              --------->LBD16                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                            ------>ZmHOX2a(2)                                                            ========================HOX2a_HOX2a                                                           =========================HOX2a_HOX2a                                                           <------ZmHOX2a(2)                                                           --------->CCA1(2)       --------->HSFB2a(2)   <---------At5g28300                                  ----------->ARR10<-----------GT1         <---  <-----------GT1                              <---------GLK1(1)    --------->YAB1 <---------HSFB2a(2) -ATHB12                               --------->AHL20(2) --------->ARR14(2)      <xxxxxxxxxxxxxxxxxx xxxxxxxxxxx>smallRNA(si3)             <---------AHL20(2) <---------ARR14(2) ------>ZmHOX2a(1)  <---- ->TEIL                              <---------------AGL15--------->AGP1<---------CCA1(2)       <----   caatttaccatcttctatttttgtttgtaattttgttttatatatatagaattctccatagatccgaaaatcatatatccttcttctagatttctatggc  24019700  Previous    Next  AGI:  At5g59560.1    Description:  SRR1 (SENSITIVITY TO RED LIGHT REDUCED 1). Identical to Protein SENSITIVITY TO RED LIGHT REDUCED 1 (SRR1) [Arabidopsis Thaliana] (GB:Q8GWZ6;GB:Q9LTH5); similar to hypothetical protein [Vitis vinifera] (GB:CAN76600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67341.1); contains InterPro domain SRR1 (InterPro:IPR012942) Range:  from: 24017782    to: 24019157    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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