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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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           <------MYB83
           <------MYB46(1)
          --------->MYB59
        --------->CCA1(2)
        --------->ARR14(1)
       --------->ARR11(1)
       --------->ARR14(2)
       <---------ARR14(2)                <----------DOF2
       --------->ARR11(3)             <-----------GT1                               <---------------
     --------->ICU4  <----------DOF2 <-----------GT1                    <---------TOE2(3)
     ----------->ARR10   <<<<<<<<<<MYB80 <---------DAG2       <-----------GT1    ----------->HVH21
 <-------TEIL  <----------DOF2   <---------AHL20(2)  ---------->DOF2    <---------TOE1(3)       <---
 
tagatgcaaagatttggtcttttactttggtttgatttttttaacttttctcaatgtaaagtttttaactggaataaggtttctctgaccagtttagggc  23988100
                                                                                         --------->ATHB12
        <-----------RAV1(1)                                                              <---------AHL20(2)
       ------>ZmHOX2a(2)                                                                 <---------ICU4
     --------->GLK1(2)                                                                   --------->ATHB51
     <---------ARR14(2)                                                                  --------->AHL20(2)
     --------->ARR14(2)                                                                 <---------YAB1
     <---------ARR11(3)                                                                 --------->ICU4
     --------->ARR11(3)                                                               --------->YAB1
     <---------AGP1<----------DOF2                 <---------ANAC58                  <---------YAB1
    <------ZmHOX2a(1)           <---------YAB1     <---------ANAC58         ------>ZmHOX2a(1)
--AGL1<------ZmHOX2a(2) ----------->HVH21   --------->ANAC55(2)       <---------ICU4 <---------AHL20(2)
-------DOF2     <---------ARR11(3)      <----------DOF2       <----------DOF2  <---------ANAC46
 
ttttagaggatctgttgtacatcttttgtgacattctcattctctttacatatttcttatctagactttttaaaaattcctcgtgtgtataattatttga  23988200
                                        <---------WOX13(1)
                                      --------->ATHB12              ----------->GT1         <------MYB46(1)
                                     <---------YAB1             ------>MYB83                <------MYB83
                                   <---------ANAC46             ------>MYB46(1)           <---------WOX13(1)
                                 <---------ANAC58            --------->MYB46(3)        <---------YAB1
                                 <---------ANAC58           -------->P            --------->ZAT6----
                                 <---------ANAC46    <-----------HVH21<---------MYB52(1)--------->ATHB12
 
tgtgctacttgtctgattccacgagttcgagttttgtcgtgtgattgaattcgaattgtcacttaccaacgtcgttaatacactaacactatgattggtc  23988300
        <---------DEAR3(1)
        ------>ZmHOX2a(2)
      --------->ARR14(2)  --------->GLK1(2)
      <---------ARR14(2)  <---------ARR14(2)                          <---------LBD16
   <---------TOE1(2)      --------->ARR14(2)                      ----------->HVH21
------>ZmHOX2a(2)        --------->GLK1(1)              ------>MYB46(1) --------->LBD16
------->HVH21        ----------->GT1                    ------>MYB83 ------->TEIL       <-----------HVH21
 
tgatcgctggatcggtgaaccaattggaaaatccagttcaagttgttttagcaaaaaccaatctcttctctgaaccggaaaactgtaaaccggtcagtac  23988400
                                                            <---------At4g35610
                                                            --------->At4g35610
                                                           <---------RAP2.3(1)
                                                           <---------DEAR3(2)
                                                           ------>NtERF2
                                                          <---------DEAR3(1)                       -
                 --------->LBD16         --------->ALFIN1 <---------RAP2.3(3)                      -
         <-----------GT1             --------->ZAT2    --------->MYB52(2)            <---------ETT(2)
      --------->ANAC58               --------->At4g35610*TSS<------NtERF2            --------->ETT(2)
      --------->ANAC58               <---------ZAT2   <-------TEIL            <---------DAG2       -
 ------>ZmHOX2a(2)   --------->ATHB12<---------At4g35610<-----------HVH21     <----------DOF2   <---
 
ttgatccataagaaaccctccgagtgatttgaagggtttgagctgtgttgaaaatggttcgtcggctctctctaaacccctctttttgtcgactgcttct  23988500
                                      --------->O2
                                      ====================================bZIP_DOF
                                      <---------TGA1a
                                      <---------O2
                                      --------->bZIP60(2)
                                      --------->TGA1a
                                      <---------ANAC46
                                     --------->ATERF1(1)
                                    <---------ATERF1(1)
                                    ------>NtERF2
                                   ----------->HVH21
                                   --------->DEAR3(1)
                                   <---------DEAR3(1)
                                  --------->ATERF1(1)
                                 <---------ATERF1(1)
                                 --------->LBD16
                               <---------LBD16
           <---------GLK1(1) --------->ARR14(2)
           --------->GLK1(1) ------->TEIL
         <------ZmHOX2a(1)   <---------ARR14(2)                        <---------TOE2(3)
    <------NtERF2            --------->GLK1(2)              --------->ARR14(2)
   ------>NtERF2          <---------ATHB12                  ------->TEIL   ----------->GT1
   <-----------HVH21      --------->MYB46(3)                --------->GLK1(2)
  <---------ANAC46       ------>MYB83<------NtERF2          <---------ARR11(1)
  --------->DEAR3(1)     ------>MYB46(1)                    <---------ARR14(2)
-------->ANAC46         --------->MYB52(1)                 <---------CCA1(2)
-------->ANAC58        --------->AtMYB61                   <---------ARR14(1)
-------->ANAC58        --------->DEAR3(1)        <---------ALFIN1 --------->MYB52(2)
------REM1(2)         --------->MYB46(3)      <-----------GT1  <----------DOF2  ---------->DOF2
 
tcacgccgtcgaggaattcttctccaccaacgaatccggcgacgtcttatcaccaccttgtcgaatctttagttgatgttgtttaaaggtgagtccaaat  23988600
           <---------WRKY18(1)
           >>>>>>>>>WRKY18
       <------NtERF2
      ------>NtERF2
     --------->RRTF1(3)
     --------->RRTF1(2)
     --------->DEAR3(1)
     --------->DREB2C(2)
     --------->RAP2.3(2)
     --------->RAP2.6(2)
     <---------ALFIN1
     --------->RAP2.3(3)
    --------->RRTF1(1)
    --------->RAP2.3(1)
    --------->ERF1
    --------->RAP2.6(1)
    --------->ORA47(2)
    --------->ATERF1(1)                                                       <---------ATHB12
    --------->DEAR4(2)                                                  ------>ZmHOX2a(2)
    <------NtERF2                                                      --------->GLK1(1)
   ------>NtERF2                                                       <---------GLK1(1)
   <---------ATERF1(1)                                                 <------ZmHOX2a(2)
  --------->ANAC46                                                    <---------ARR11(3)
 <-------MYC3                                                         --------->ARR14(2)
 ------->MYC3                                                         <---------ARR14(2)
 <-------PIF5                                                         <---------AGP1
 ------->PIF5                                                         --------->ARR11(3)
 <-------MYC2                               ==================================HOX2a_HOX2a         <-
 ------->MYC2 <----------DOF2               ===================================HOX2a_HOX2a        <-
--------->ANAC58      ------->TEIL          ------>ZmHOX2a(1)        <---------CCA1(2)   <---------WOX13(1)
--------->ANAC46   <---------YAB1   <-------TEIL                 --------->STY1(2)     --------->ATHB12
--------->ANAC58 --------->YAB1 <---------YAB1                   <---------STY1(2)    <---------YAB1
 
tccacgcgccgccttgactttcatgaatgtgtgttttgatacatttcctacatattccgatgttttctagctagatctccaacgattttctgattgaatt  23988700
                                                                --------->GLK1(1)
                                                                <------ZmHOX2a(2)
                                                                <---------At4g35610
        <---------ANAC55(2)                                     <---------GLK1(1)
        --------->ANAC55(2)                                    ------->TEIL
    <-------GAMYB                                              <-----------ARR10
   <------MYB46(1)                                             --------->ARR11(3)
   ----------->GT1<----------DOF2                              <---------ARR14(2)
   <------MYB83  ------>ZmHOX2a(2)                        --------->MYB52(1)
   <---------MYB46(3)                           <---------ICU4 <---------AGP1
   --------->MYB52(2)                       --------------->AGL15
  <---------AtMYB61    --------->ZAT6       <---------------AGL15  --------->ZAT2
 <--------P     <---------YAB1             <-----------------AGL2------>ZmHOX2a(2)
<-------GAMYB<---------YAB1               <---------At4g35610  --------->ARR14(2)
--------TOE1(3)<---------ARR11(3) <---------TOE1(2)    --------->ANAC58                 <----------DOF2
--------TOE2(3)--------->ARR11(3) <---------TOE2(2)    --------->ANAC58         <---------ZAT6
 
tagggttggttacatgatgatctttgactctaactcgcaggttttagctaataagggcatgaaacggatctgctcggtttcaagtgttcaactttgtaag  23988800
                   <---------YAB1
               <----------DOF2                                                           --------->DAG2
               <---------DAG2                                                           ---------->DOF2
          <---------MYB59                                                            --------->YAB1
         --------->ANAC55(2)                               <---------YAB1           <---------YAB1
         <---------ANAC55(2)                <---------ANAC58                      <----------DOF2 <-
       <-----------GT1              --------->ICU4      <----------DOF2 --------->At4g35610    <----
       --------->AHL20(2)---------->ID1     <---------ANAC58            <---------At4g35610    -----
 
ttaaactaaattacataactttattcttggcctcttgcaatgtttttgcttcttcaagtcttttgattttgtattagctcagtgactttgataaagtgat  23988900
                                                                             <---------ANAC58
      --------->YAB1               <---------DAG2                            <---------ANAC58
      <---------ICU4               --------->TOE1(3)                         <---------ANAC46
--------YAB1                       --------->TOE2(3)             <-----------GT1              <-----
-----YAB1                    --------->YAB1                  --------->ARR11(3)         --------->ARR11(3)
---->ICU4           <---------ATHB12          ----------->GT1<---------ARR11(3)         <---------ARR11(3)
 
gatttttgatcatgaacagactaatgaattcttcataaccttatggattttgtgaattgaaacagatattactctcaattgcctatagatagattttaag  23989000
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AGI:  At5g59430.1   
Description:  ATTRP1 (TELOMERE REPEAT BINDING PROTEIN 1); DNA binding. similar to TRFL1 (TRF-LIKE 1), DNA binding [Arabidopsis thaliana] (TAIR:AT3G46590.1); similar to TRFL1 (TRF-LIKE 1), DNA binding [Arabidopsis thaliana] (TAIR:AT3G46590.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO21633.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778)
Range:  from: 23984837    to: 23988171    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At5g59440.1   
Description:  thymidylate kinase family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO14608.1); contains InterPro domain Thymidylate kinase; (InterPro:IPR000062)
Range:  from: 23988457    to: 23990150    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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