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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
YAB1
<---------
ICU4
-------->
ATHB1
--------->
ATHB12
--------->
ANAC58
<--------
HAHB4
--------->
ANAC46
<---------
ATHB12
<---------
WRKY38(1)
--------->
ICU4
<------
MYB46(1)
--------->
WOX13(1)
<---------
WRKY12
--------->
AHL20(1)
<------
MYB83
<---------
AHL20(2)
--------->
ALFIN1
<---------
At4g35610
--------->
AHL20(2)
--------->
ALFIN1
--------->
At4g35610
--------->
AHL20(2)
<--------
P
------->
GAMYB
--------->
MYB46(3)
<---------
ANAC55(2)
<---------
AHL20(2)
<-------
GAMYB
--------->
ARR14(2)
----->
GLK1(1)
<---------
ICU4
---------->
DOF2
<---------
ATHB51
<---------
LBD16
--------->
ANAC58
---
>
DOF2
--------->
AHL20(2)
<---------
ATHB12
----------->
RAV1(2)
<---------
ARR14(2)
attcaacagctaattcaattcattacatatgcagaaagaatggaatcccaaataatttgcaatcattac
ctggggttgggacaacgccaatctccatctc
23657700
<---------
ALFIN1
<------
NtERF2
<---------
ATERF1(1)
------>
NtERF2
--------->
ABI4(1)
--------->
RAP2.6(2)
--------->
DEAR3(1)
--------->
ANAC58
--------->
ANAC46
--------->
RAP2.3(2)
<---------
ATERF1(2)
--------->
ANAC58
--------->
DREB2C(2)
--------->
RRTF1(2)
--------->
RRTF1(3)
--------->
RAP2.3(3)
--------->
ATERF1(2)
--------->
ORA47(2)
--------->
ATERF1(1)
--------->
RRTF1(1)
--------->
DREB2C(2)
--------->
ERF1
------->
GAMYB
--------->
RAP2.6(1)
--------->
DEAR3(1)
--------->
RAP2.3(1)
--------->
MYB46(3)
--------->
ABI4(1)
--------->
ORA47(2)
--------->
At4g35610
<---------
ATERF1(1)
<---------
At4g35610
--------->
AtMYB61
<---------
ATERF1(1)
<---------
ALFIN1
--------->
LBD16
--------->
AtMYB61
------>
NtERF2
<------
ZmHOX2a(2)
--------->
DEAR3(1)
--------->
DEAR3(1)
<-----------
HVH21
<---------
ALFIN1
<---------
ALFIN1
--------->
LBD16
--------->
AtMYB61
--------->
ANAC46
--------->
DEAR3(1)
--------->
ANAC46
--------->
ATERF1(1)
<---------
At5g28300
--------->
MYB46(3)
<---------
ATERF1(1)
<---------
ALFIN1
<---------
GLK1(1)
--------->
YAB1
<
------>
NtERF2
------>
ZmHOX2a(1)
--------->
GLK1(1)
------>
NtERF2
<---------
ATHB12
-
--->
NtERF2
====================
HOX2a_HOX2a
--------->
MYB46(3)
--------->
YAB1
-----
tgcctccgccgccacttcctcttccaccgcgatcacctccttgatatccaccacctccaccgc
ctaaatcaaaacgaatcatcgaaatagtgagaaacta
23657800
--------->
MYB46(3)
----------->
RAV1(1)
------>
ZmHOX2a(2)
<---------
ARR14(2)
<---------
AGP1
--------->
ARR14(2)
--------->
ARR11(3)
--------->
AGP1
<---------
CCA1(2)
--------->
YAB1
--------->
YAB1
--------->
ANAC58
<---------
TOE1(3)
--------->
CCA1(2)
---------->
DOF2
----------->
GT1
<---------
TOE2(3)
<------
ZmHOX2a(2)
<-----------
GT1
--------->
ANAC58
--------->
DAG2
----------->
ARR10
---------
ARR11(3)
<---------
ZAT2
--------->
YAB1
<---------
ATHB12
>>>>>>>>>
RAP2.2
-
-------->
ARR11(3)
--------->
ZAT2
---------->
DOF2
--------->
WOX13(1)
--------->
TOE2(3)
<-----
----->
DOF2
--------->
At4g35610
--------->
GLK1(1)
----------->
GT1
<---------
ARR11(3)
--------->
TOE2(3)
aagatttaacaaaagtagctcagcaaggaatggagaaatctaaagaatcataaggttatatcaatcagatctgcaacaatctaaatcacaaac
ctcgatt
23657900
<---------
ARR14(2)
--------->
ARR14(2)
<---------
ALFIN1
--------->
RAP2.6(2)
--------->
MYB46(3)
--------->
RAP2.3(2)
------>
NtERF2
--------->
LBD16
------>
NtERF2
--------->
DEAR3(1)
------>
NtERF2
----------->
RAV1(1)
<---------
ATERF1(1)
<------
NtERF2
<-----------
HVH21
--------->
ABI4(1)
<---------
ATERF1(1)
------>
NtERF2
--------->
AtMYB61
<---------
MYB111(1)
--------->
DREB2C(2)
<---------
SPL7
--------->
LBD16
------->
GAMYB
<---------
ALFIN1
--------->
MYB46(3)
--------->
DEAR3(1)
<--
<---------
ALFIN1
<-----------
HVH21
--------->
ANAC58
----
--------->
DEAR3(1)
--------->
DEAR3(1)
--------->
ANAC58
<---------
ARR14(2)
----
--------->
DEAR4(2)
<---------
ALFIN1
--------->
AtMYB61
<---------
CCA1(2)
------
--------->
AtMYB61
------->
GAMYB
--------->
At5g28300
--------->
ATERF1(1)
---------
<---------
ALFIN1
<--------------
OsCBT
-------->
P
<---------
ABI4(2)
<---------
ALFIN1
<---------
MYB55(2)
<---------
MYB55(2)
<---------
MYB46(2)
<------
NtERF2
--------->
ARR14(2)
<--------
--------->
MYB46(3)
--------->
MYB46(3)
<------------
MYB.PH3(2)
--------->
AtMYB61
--------->
AtMYB61
----->
ZmHOX2a(1)
--------->
At5g28300
<---------
MYB111(2)
<---------
ALFIN1
--------->
AtMYB61
----
GLK1(1)
<---------
ATERF1(1)
--------->
SPL7
--------->
ANAC46
--------->
SPL7
--------->
DEAR3(1)
tcctctaccaccgcctccaccgtaaccaccgcgtccgccgtaactacctccgccagaggcaccgcgtccaccatatccagcatcaccacctccataacct
23658000
<---------
RAP2.6(3)
--------->
DEAR3(1)
--------->
RAP2.3(2)
--------->
RAP2.3(3)
--------->
ATERF1(1)
--------->
ORA47(2)
--------->
DEAR4(2)
<------
NtERF2
<---------
ATERF1(1)
------>
NtERF2
--------->
ABI4(1)
--------->
ATERF1(2)
--------->
DREB2C(2)
--------->
RAP2.6(2)
--------->
DEAR3(1)
--------->
RRTF1(3)
<---------
DEAR3(1)
--------->
RRTF1(2)
--------->
RAP2.3(2)
--------->
RAP2.3(3)
--------->
RRTF1(1)
--------->
ERF1
--------->
DEAR4(2)
--------->
ATERF1(1)
--------->
RAP2.6(1)
--------->
RAP2.3(1)
--------->
ORA47(2)
--------->
At4g35610
--------->
ABI4(1)
--------->
LBD16
------------------>
SPL14
<---------
ATERF1(1)
<---------
ARR11(1)
<---------
At4g35610
<---------
SPL7
------>
NtERF2
------>
NtERF2
--------->
DEAR3(1)
--------->
DEAR3(1)
--------->
LBD16
--------->
SPL7
<---------
ALFIN1
--------->
DEAR3(1)
--------->
SPL1(1)
<---------
ZAT2
--------->
ANAC46
<---------
SPL1(1)
--------->
ZAT2
<---------------
AtSPL8
--------->
SPL7
--------->
AtMYB61
------->
TEIL
------>
NtERF2
<---------
ATERF1(1)
<---------
SPL7
<---------
ALFIN1
--------->
ATHB12
<---------
STY1(1)
<---------
ALFIN1
<---------
ALFIN1
--------->
ZAT18
<---------
YAB1
--------->
STY1(1)
-------
ALFIN1
--------->
MYB46(3)
<---------
ZAT18
--------->
ICU4
<---------
WRKY18(1)
-->
MYB46(1)
--------->
ANAC46
--------->
ANAC58
--------->
ANAC46
----------->
HVH21
-->
MYB83
<---------
CCA1(2)
----------->
HVH21
--------->
AtMYB61
--------------->
AtSPL8
--->
AtMYB61
--------->
WOX13(1)
---------->
TaMYB80
--------->
RAP2.3(1)
--------->
ANAC58
-
>
ARR14(2)
<---------
ARR14(2)
--------->
ANAC58
<---------
ALFIN1
--------->
ANAC58
---
-
ARR14(2)
--------->
ARR14(2)
<---------
LBD16
--------->
DEAR3(1)
--------->
ANAC46
---
ccccctccgccgtatccatcaccaccgtacgacggaataggcgcacctccgccgccgtcttgattgtacatcccagccat
gacctagggtttgcgataaa
23658100
--------->
AHL20(2)
<---------
AHL20(2)
<----------
DOF2
<-----------
HVH21
--------->
GLK1(2)
--------->
AtMYB61
<---------
ANAC58
--------->
ARR11(3)
------->
GAMYB
--------->
MYB52(1)
<---------
ARR11(3)
-------->
MYB46(3)
<---------
ANAC58
--------->
CCA1(1)
<----
------>
MYB52(1)
<---------
ARR14(2)
*
TSS
--------->
RVE1(1)
<----
-------->
RAV1(1)
------->
TEIL
<----------
DOF2
--------->
AHL20(2)
<-----------
TBP
--------->
YAB1
<
caacagaccaaaactcttaacgaatcgtgtgagagcctttttagac
gtagaataaaaaatctcgcgttttatttatatttctctcaaaaatagtggaact
23658200
--------->
ARR14(2)
------>
MYB46(1)
------>
MYB83
-------->
P
--------->
MYB52(1)
--------->
MYB55(1)
--------->
TOE2(3)
<---------
MYB46(2)
<------------
CBF
--------->
TOE1(3)
----------->
HVH21
<----------
DOF2
<---------
ICU4
--------->
TOE2(3)
--------->
MYB46(3)
<---------
DAG2
--------->
ATHB12
--------->
ARR11(3)
--------->
DEAR3(2)
--------------->
AGL15
--------->
ATHB51
<---------
ARR11(3)
<----------
DOF2
<---------
ANAC58
-----
DAG2
--------->
TOE1(3)
<-----------
GT1
<---------
At5g28300
--------->
MYB52(1)
------
DOF2
--------->
YAB1
<----------
DOF2
<-----------
GT1
<-----------
GT1
---------
YAB1
<---------
CCA1(2)
<---------
CCA1(2)
<---------
ARR14(2)
<---------
ANAC58
ttattattgcatttatcttaaatcttaaattcttttacatcttatcttttaccgaccggtttcccaaaataactggacttgctttttttatcaaataaga
23658300
--------->
ANAC55(2)
--------->
ANAC46
<---------
ANAC55(2)
<----------
DOF2
<---------
ANAC58
--------->
TOE1(3)
<---------
MYB52(1)
--------->
TOE2(3)
--------->
MYB52(1)
--------->
At4g35610
--------->
YAB1
<---------
ANAC58
--------->
YAB1
----------------->
AGL2
<---------
ICU4
<---------
ALFIN1
<---------
TOE2(3)
--------->
YAB1
--------->
ATERF1(1)
<-----------
GT1
<-----------
RAV1(1)
caacatggttctaaggcccataatcatctaacctttacgaaggcccagcccaataacagttattttt
tacgtagcccaatacagttttgaaatgtggcta
23658400
<---------
LBD16
----
---------->
DOF2
<---------
At4g35610
--------->
TOE2(3)
--------->
At4g35610
--------->
AtMYB61
--------->
TOE1(3)
<------
ZmHOX2a(1)
<---------
ZAT2
<---------
ARR14(2)
<----------
DOF2
--------->
SPL7
<------
ZmHOX2a(1)
--------->
ARR14(2)
--------->
REM1(1)
--------->
LBD16
--------->
YAB1
--------->
ZAT2
ttagagagaaattagaggcaaaatccaccaaaattttgctataactacaact
ttaaaagagtccggacagtaggaacaataagaggagaggccagctctg
23658500
------>
ZmHOX2a(1)
================
HOX2a_HOX2a
--------->
TOE2(3)
--------->
YAB1
<---------
ATHB12
--------->
ICU4
--------->
LBD16
<---------
ZAT6
--------->
DEAR3(2)
--------->
ICU4
<---------
ARR14(2)
--------->
ZAT6
>>>>>>>>>
SARD1
<-----------
HVH21
--------->
MYB52(1)
----------->
RAV1(1)
-
>>>>>>>>>
CBP60g
--------->
YAB1
--------->
ARR14(2)
<------
ZmHOX2a(2)
----
------>
DOF2
<---------
YAB1
<---------
HSFB2a(2)
<------
ZmHOX2a(1)
<---
aaagaaatttggagtttgcgaagatgaatgagaagtgtcaagttgaatcgagaaccggcaattatcctcagaaggatcaacagtagtgatcaaaccaagt
23658600
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AGI:
At5g58470.1
Description:
TAF15b (TBP-ASSOCIATED FACTOR 15b); binding. similar to TAF15 (TBP-ASSOCIATED FACTOR 15), RNA binding [Arabidopsis thaliana] (TAIR:AT1G50300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41174.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876)
Range:
from: 23654933
to: 23658146
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At5g58480.1
Description:
glycosyl hydrolase family 17 protein. Identical to Putative glucan endo-1,3-beta-glucosidase 9 precursor [Arabidopsis Thaliana] (GB:Q9FGH4); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT4G17180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41173.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490); contains InterPro domain X8 (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, catalytic core; (InterPro:IPR013781)
Range:
from: 23658368
to: 23660079
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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